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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025185 ID=TCONS_00025185|Name=TCONS_00025185|organism=Clytia hemisphaerica|type=transcript|length=2319bp
aaGAACGTTAGGTGAACCTTATTCTGACGCTTTGTGCAAACCGGATCCCA
TAATAGATATTTCAATAAAGGCTGGCGTAATAATGcaagtttttcatatt
tttcatgtattttttctCAGAAGATGGAAGAATAAAACCAAGACCACCCG
GCAAAACACAAACACACCACCCACAATTTACTGACCATCAACCTgaagaa
aagtattttttataCAACAGTACCATCACACGACGTTCttcaatgaaaaa
taatagaGAAAATAGAGTCATGCGTACAAGCTACATTAAAGTGATATTCG
CTTTCTTGTTTCCTTTTCTCATCATTTTCACCGTCTTACAGCACATCGGT
CCTTTCAAATTCTCTTCTTACAAAGAAATCACGTACGATGAGAAGAATCG
TGAAATCGATGCATGGAGTCTTGAACGAGGTGACGTCATCGATCGGTTGG
ACACCATCTCGGAGAATATACACAAAGATCGAACTGAGTTTAATAAGACA
CTAAAATTAATACATTCGAAATTAACAGATTTAAtgaaatcagagaaaaa
tagtGTTCTTCAAAATGTTGCACCTAGAGTTGACGGGAAGAAAAAGACAC
GAGTACGTTGCCCGAAAACGTATAAAAATCCTAGCGGTTACGTTATCAAA
GACTCCGTTAGGGCGCCGTGCATCACACGCTATCTCCTTGTTATTTTAAT
TTCAACTCACGTATCACATTACGATCGACGTGGCACGATACGGGAGACGT
GGGCCGATGCTTCACGTTGGAACATACGAGGTGATTTACCGTGGACAGTA
GTTTTCAACATAGGATACGTGAACAAAACGCATAAAATATCTCACAAGTT
ACGTGAAGAGATGAAACATCACGGTGATCTGATTGTTGGTGACGtcaaag
aaagtttttataCGCTGTCGAAAAAATTATCGATTGGAATCGATTGGCTA
CATCGAAATCTGGTCTTCGATTTTGTTCTAAAAACGGACGATGACGTTTT
TATAAACATTCCTAAGGTTTTGAAAGCGTTAAATACGTTACCCAGTCACA
TTCAATATTTCGGCCACGTAATGTGGCGTCAACCTGTTGAACGCAAGGGG
CGTTATAAACTCACGCCCGATGAATTCAAACACGACCGATTCGACCCGTA
CTGTTCTGGGGGTGGATTCATAGTCAGACAGGGCGTTATCGAGAAAATTG
CTTGGTACCTTGTCTTTAATAGACCTTTGAAATACGAGGACGCCTATTTC
GGATCGTTGGCGTTTAAAGCGGGCGTTGTACCATCCAAGGCgtatgataa
atattttttgatgaggAACCATAAATGCATCTATCACGAAGAGATGTTTC
TATCGCACAGGAGTGGACCTCGGTGTATGAAGTCTTTAATGATCAGATCA
AGCACTCAAATAGatcacttttgattttgaaaataccTTGAGTGGGAACC
AGAAACATTTATgtgtaccgtattacttcgaacaaaccccctcgaataaa
cacctCCCTCTACTTTCACTTTCCTGAAATGACACAGTTGTACGAAACGG
CAAAACAAGGTTCCCATTCATTTTATTAAAGTGACCTTGGttaaaaatta
tttgataaaCGCCCACTTCTTTTAACctcccccctccccccttgaaTAAA
CACCCCTCTCAAAATCCAAGAGATTtagaccacgttcacacgctacggtt
ccgtttcgctcgaaaacgaaatgaagccattctattggtttaATTCGAGT
TTTACGTCACtcctaaccaatagaatggcttcttTTCGTTCCGTAGCGAA
ACGAAACCGTAgtgtgcgaacatggtcttattGAACGCCCGGGGTGCTCA
TTCGAATTAATATGGTAGCCAAAAAAAGCAAACGTAACAGAGTCGGAAGA
TAATCCCTACTTGGTTTCTaactttatttatcatttttcgtgttatatta
tttattatatatttatataCAAGGGAGGAATATTTTTTGATTCCGGAAAT
AATCAATCGCGTTGAACATTCGTTTGAATTTCGGCTTTTATGTCGCTTTG
CAGTGGTAAGTAGCACTGAGTTTATTCGAAATACCACCATAGTAGTCTAC
ACAATgaacagctccaggcttttagccCTTAGTAGGAGTAGGAATTCTAC
GCTCTGAGGAAGATATGACATAACCTAAAACAATGGGGAATTCAAAATAA
CCAATTTCAGCCAACAAATTTCACGTTGACACTTAATTAAAGTCCTGAAG
TTTTCTGAATGTGTATCGGATACCGTAAACTGTATTCACAAcatcgagtt
tatgtatgtgtgtttttct Run BLAST on NCBI protein sequence of TCONS_00025185-protein >TCONS_00025185-protein ID=TCONS_00025185-protein|Name=TCONS_00025185-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MYFFSEDGRIKPRPPGKTQTHHPQFTDHQPEEKYFLYNSTITRRSSMKNN
RENRVMRTSYIKVIFAFLFPFLIIFTVLQHIGPFKFSSYKEITYDEKNRE
IDAWSLERGDVIDRLDTISENIHKDRTEFNKTLKLIHSKLTDLMKSEKNS
VLQNVAPRVDGKKKTRVRCPKTYKNPSGYVIKDSVRAPCITRYLLVILIS
THVSHYDRRGTIRETWADASRWNIRGDLPWTVVFNIGYVNKTHKISHKLR
EEMKHHGDLIVGDVKESFYTLSKKLSIGIDWLHRNLVFDFVLKTDDDVFI
NIPKVLKALNTLPSHIQYFGHVMWRQPVERKGRYKLTPDEFKHDRFDPYC
SGGGFIVRQGVIEKIAWYLVFNRPLKYEDAYFGSLAFKAGVVPSKAYDKY
FLMRNHKCIYHEEMFLSHRSGPRCMKSLMIRSSTQIDHF Run BLAST on NCBI transcript from alignment at sc0000524:81509..83827 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025185 ID=TCONS_00025185|Name=TCONS_00025185|organism=Clytia hemisphaerica|type=transcript|length=2319bp|location=Sequence derived from alignment at sc0000524:81509..83827 (Clytia hemisphaerica)
agaaaaacacacatacataaactcgatgTTGTGAATACAGTTTACGGTAT
CCGATACACATTCAGAAAACTTCAGGACTTTAATTAAGTGTCAACGTGAA
ATTTGTTGGCTGAAATTGGTTATTTTGAATTCCCCATTGTTTTAGGTTAT
GTCATATCTTCCTCAGAGCGTAGAATTCCTACTCCTACTAAGggctaaaa
gcctggagctgttcATTGTGTAGACTACTATGGTGGTATTTCGAATAAAC
TCAGTGCTACTTACCACTGCAAAGCGACATAAAAGCCGAAATTCAAACGA
ATGTTCAACGCGATTGATTATTTCCGGAATCAAAAAATATTCCTCCCTTG
tatataaatatataataaataatataacacgaaaaatgataaataaagtt
AGAAACCAAGTAGGGATTATCTTCCGACTCTGTTACGTTTGCTTTTTTTG
GCTACCATATTAATTCGAATGAGCACCCCGGGCGTTCaataagaccatgt
tcgcacacTACGGTTTCGTTTCGCTACGGAACGAAaagaagccattctat
tggttaggaGTGACGTAAAACTCGAATtaaaccaatagaatggcttcatt
tcgttttcgagcgaaacggaaccgtagcgtgtgaacgtggtctaAATCTC
TTGGATTTTGAGAGGGGTGTTTAttcaaggggggaggggggagGTTAAAA
GAAGTGGGCGtttatcaaataatttttaaCCAAGGTCACTTTAATAAAAT
GAATGGGAACCTTGTTTTGCCGTTTCGTACAACTGTGTCATTTCAGGAAA
GTGAAAGTAGAGGGaggtgtttattcgagggggtttgttcgaagtaatac
ggtacacATAAATGTTTCTGGTTCCCACTCAAggtattttcaaaatcaaa
agtgatCTATTTGAGTGCTTGATCTGATCATTAAAGACTTCATACACCGA
GGTCCACTCCTGTGCGATAGAAACATCTCTTCGTGATAGATGCATTTATG
GTTcctcatcaaaaaatatttatcatacGCCTTGGATGGTACAACGCCCG
CTTTAAACGCCAACGATCCGAAATAGGCGTCCTCGTATTTCAAAGGTCTA
TTAAAGACAAGGTACCAAGCAATTTTCTCGATAACGCCCTGTCTGACTAT
GAATCCACCCCCAGAACAGTACGGGTCGAATCGGTCGTGTTTGAATTCAT
CGGGCGTGAGTTTATAACGCCCCTTGCGTTCAACAGGTTGACGCCACATT
ACGTGGCCGAAATATTGAATGTGACTGGGTAACGTATTTAACGCTTTCAA
AACCTTAGGAATGTTTATAAAAACGTCATCGTCCGTTTTTAGAACAAAAT
CGAAGACCAGATTTCGATGTAGCCAATCGATTCCAATCGATAATTTTTTC
GACAGCGtataaaaactttctttgaCGTCACCAACAATCAGATCACCGTG
ATGTTTCATCTCTTCACGTAACTTGTGAGATATTTTATGCGTTTTGTTCA
CGTATCCTATGTTGAAAACTACTGTCCACGGTAAATCACCTCGTATGTTC
CAACGTGAAGCATCGGCCCACGTCTCCCGTATCGTGCCACGTCGATCGTA
ATGTGATACGTGAGTTGAAATTAAAATAACAAGGAGATAGCGTGTGATGC
ACGGCGCCCTAACGGAGTCTTTGATAACGTAACCGCTAGGATTTTTATAC
GTTTTCGGGCAACGTACTCGTGTCTTTTTCTTCCCGTCAACTCTAGGTGC
AACATTTTGAAGAACactatttttctctgatttcaTTAAATCTGTTAATT
TCGAATGTATTAATTTTAGTGTCTTATTAAACTCAGTTCGATCTTTGTGT
ATATTCTCCGAGATGGTGTCCAACCGATCGATGACGTCACCTCGTTCAAG
ACTCCATGCATCGATTTCACGATTCTTCTCATCGTACGTGATTTCTTTGT
AAGAAGAGAATTTGAAAGGACCGATGTGCTGTAAGACGGTGAAAATGATG
AGAAAAGGAAACAAGAAAGCGAATATCACTTTAATGTAGCTTGTACGCAT
GACTCTATTTTCtctattatttttcattgaaGAACGTCGTGTGATGGTAC
TGTTGtataaaaaatacttttcttcAGGTTGATGGTCAGTAAATTGTGGG
TGGTGTGTTTGTGTTTTGCCGGGTGGTCTTGGTTTTATTCTTCCATCTTC
TGagaaaaaatacatgaaaaatatgaaaaacttgCATTATTACGCCAGCC
TTTATTGAAATATCTATTATGGGATCCGGTTTGCACAAAGCGTCAGAATA
AGGTTCACCTAACGTTCtt Coding sequence (CDS) from alignment at sc0000524:81509..83827 >TCONS_00025185 ID=TCONS_00025185|Name=TCONS_00025185|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at sc0000524:81509..83827 (Clytia hemisphaerica)
tcaaaagtgatCTATTTGAGTGCTTGATCTGATCATTAAAGACTTCATAC
ACCGAGGTCCACTCCTGTGCGATAGAAACATCTCTTCGTGATAGATGCAT
TTATGGTTcctcatcaaaaaatatttatcatacGCCTTGGATGGTACAAC
GCCCGCTTTAAACGCCAACGATCCGAAATAGGCGTCCTCGTATTTCAAAG
GTCTATTAAAGACAAGGTACCAAGCAATTTTCTCGATAACGCCCTGTCTG
ACTATGAATCCACCCCCAGAACAGTACGGGTCGAATCGGTCGTGTTTGAA
TTCATCGGGCGTGAGTTTATAACGCCCCTTGCGTTCAACAGGTTGACGCC
ACATTACGTGGCCGAAATATTGAATGTGACTGGGTAACGTATTTAACGCT
TTCAAAACCTTAGGAATGTTTATAAAAACGTCATCGTCCGTTTTTAGAAC
AAAATCGAAGACCAGATTTCGATGTAGCCAATCGATTCCAATCGATAATT
TTTTCGACAGCGtataaaaactttctttgaCGTCACCAACAATCAGATCA
CCGTGATGTTTCATCTCTTCACGTAACTTGTGAGATATTTTATGCGTTTT
GTTCACGTATCCTATGTTGAAAACTACTGTCCACGGTAAATCACCTCGTA
TGTTCCAACGTGAAGCATCGGCCCACGTCTCCCGTATCGTGCCACGTCGA
TCGTAATGTGATACGTGAGTTGAAATTAAAATAACAAGGAGATAGCGTGT
GATGCACGGCGCCCTAACGGAGTCTTTGATAACGTAACCGCTAGGATTTT
TATACGTTTTCGGGCAACGTACTCGTGTCTTTTTCTTCCCGTCAACTCTA
GGTGCAACATTTTGAAGAACactatttttctctgatttcaTTAAATCTGT
TAATTTCGAATGTATTAATTTTAGTGTCTTATTAAACTCAGTTCGATCTT
TGTGTATATTCTCCGAGATGGTGTCCAACCGATCGATGACGTCACCTCGT
TCAAGACTCCATGCATCGATTTCACGATTCTTCTCATCGTACGTGATTTC
TTTGTAAGAAGAGAATTTGAAAGGACCGATGTGCTGTAAGACGGTGAAAA
TGATGAGAAAAGGAAACAAGAAAGCGAATATCACTTTAATGTAGCTTGTA
CGCATGACTCTATTTTCtctattatttttcattgaaGAACGTCGTGTGAT
GGTACTGTTGtataaaaaatacttttcttcAGGTTGATGGTCAGTAAATT
GTGGGTGGTGTGTTTGTGTTTTGCCGGGTGGTCTTGGTTTTATTCTTCCA
TCTTCTGagaaaaaatacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025185-exon-sc0000524-1491911889:81509..83827 | TCONS_00025185-exon-sc0000524-1491911889:81509..83827 | Clytia hemisphaerica | exon |
| TCONS_00025185-exon-sc0000524-1510915933:81509..83827 | TCONS_00025185-exon-sc0000524-1510915933:81509..83827 | Clytia hemisphaerica | exon |
| TCONS_00025185-exon-sc0000524-1575043694:81509..83827 | TCONS_00025185-exon-sc0000524-1575043694:81509..83827 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000524 | supercontig | sc0000524:81509..83827 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
| IPR029044 | Nucleotide-diphossugar_trans |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00025185 vs. Swiss-Prot (Human)
Match: B3GT1 (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.297e-18 Identity = 62/205 (30.24%), Postives = 104/205 (50.73%), Query Frame = 3
Query: 684 LLVILISTHVSHYDRRGTIRETWADASRWNIRGDLPWTVVFNIGYVNKTHKISHKLREEMKHHGDLIVGDVKESFYTLSKKLSIGIDWLHRNLV-FDFVLKTDDDVFINIPKVLKAL---NTLPSHIQYFGHVMWRQPV-ERKGRYKLTPDEFKHDRFDPYCSGGGFIVRQGVIEKIAWYLVFNRPLKYEDAYFGSLAFKAGVVP 1283
LVILIST +D R IRETW D + N +G + +F +G N ++ + +E + D+IV D +S++ L+ K +G+ W+ +V+KTD D+F+N+ ++ L +T P + G+V+ P+ + + ++ + D + + P+CSG G+I V E I + R L ED Y G K G+ P
Sbjct: 79 FLVILISTTHKEFDARQAIRETWGDEN--NFKG-IKIATLFLLGK-NADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPRDLYPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLCLRKLGIHP 279
The following BLAST results are available for this feature:
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