TCONS_00025164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025164
Unique NameTCONS_00025164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length522

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025164 ID=TCONS_00025164|Name=TCONS_00025164|organism=Clytia hemisphaerica|type=transcript|length=522bp
cttgaaaattatgatttttaggtcggacatgaagctatttgggttGGACA
ATATCCGATGTCGGACCGTTATTTCAAGCCCTGAAAGCATGAAGAAGCCA
GGGGAGTTGGACCACATTTTCACAAAGACAGCCTTgttaaaactaataaa
ataaggAACAAGGTTTATATACCTCCATCATCACTCCACTGCTCAATATT
TTTCCGTGAAATTTTATTTCCAGAATATTTTGGTTCAACTTCGTCATTTT
GGAAggcttttttcctcaaatttccGAAACTTTTCACATCAGCAAGGTCT
GTATCTTCGTCTGTGAGTTCTGTTATCTTGGCTGCAGTCAATTCATCATC
AGAATCCTCAAAATTGATAGCAGAAGCAGGATTTTCCAATTCTTTCAACG
AGTCTCTCAAACTTTTCTTGgtcgccatctttgttgttttgatgtaACAT
GTGCGCTAAAGCCGAGTTAAACTAGTTATTCCGAGTTGTTCGGTCAGATA
TATCGAGTTATTACGAATCCCG
Run BLAST on NCBI

transcript from alignment at sc0000521:234843..235364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025164 ID=TCONS_00025164|Name=TCONS_00025164|organism=Clytia hemisphaerica|type=transcript|length=522bp|location=Sequence derived from alignment at sc0000521:234843..235364 (Clytia hemisphaerica)
CGGGATTCGTAATAACTCGATATATCTGACCGAACAACTCGGAATAACTA
GTTTAACTCGGCTTTAGCGCACATGTtacatcaaaacaacaaagatggcg
acCAAGAAAAGTTTGAGAGACTCGTTGAAAGAATTGGAAAATCCTGCTTC
TGCTATCAATTTTGAGGATTCTGATGATGAATTGACTGCAGCCAAGATAA
CAGAACTCACAGACGAAGATACAGACCTTGCTGATGTGAAAAGTTTCgga
aatttgaggaaaaaagccTTCCAAAATGACGAAGTTGAACCAAAATATTC
TGGAAATAAAATTTCACGGAAAAATATTGAGCAGTGGAGTGATGATGGAG
GTATATAAACCTTGTTccttattttattagttttaacAAGGCTGTCTTTG
TGAAAATGTGGTCCAACTCCCCTGGCTTCTTCATGCTTTCAGGGCTTGAA
ATAACGGTCCGACATCGGATATTGTCCaacccaaatagcttcatgtccga
cctaaaaatcataattttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014133XLOC_014133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025164-exon-sc0000521-1491911889:234843..235364TCONS_00025164-exon-sc0000521-1491911889:234843..235364Clytia hemisphaericaexon
TCONS_00025164-exon-sc0000521-1510915933:234843..235364TCONS_00025164-exon-sc0000521-1510915933:234843..235364Clytia hemisphaericaexon
TCONS_00025164-exon-sc0000521-1575043694:234843..235364TCONS_00025164-exon-sc0000521-1575043694:234843..235364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:234843..235364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.7299	25.0907	13.0905	9.29133	18.3426	16.9104	14.2811	14.052	20.7269	17.8651	16.0771	21.9672	24.4244	28.5747	17.5709	21.8263	15.4863	17.0939	3.73522	5.54774	17.8633	18.2814	28.9815	29.0659	18.6195	21.1791	6.06145	6.46894	21.6388	27.9426
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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