TCONS_00025035 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025035
Unique NameTCONS_00025035
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2423

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025035 ID=TCONS_00025035|Name=TCONS_00025035|organism=Clytia hemisphaerica|type=transcript|length=2423bp
AGGAAATACACCGTGTCATGTGGCTTGTTTGAACGACTATTTTGAAGTGG
TTGAACTCCTTATACATGTCAAAGCAGACTTGAACATCAAAAATAAGgat
gcatttacaccactaCACATAGCCACGCTAAACCACCACACCAAGTCAAT
GGTATTGTTGATGAAAGCTGGTGTCAACAAATCTGCTCAAGACGCTAATG
GTAACACAGCACTGCATATGGCAATACAAACGAAATCATACAAAGCATTG
AAATGTCTTCTCAAACATGGTGCTGATGTTAATATACAAAATCATGGTGG
AAACACGCCACTACATCTGAGTGCGGAACTTGGAAACGCACAATATGTGG
ACTACCTGCTTAGTGTGGACCAGCCTATTGAGCTCAGTCCCAATAATGTC
GGGGATACAGCAAAAGACATCGCCATCAGAAATGGATTCAAAGAAATTGC
ACAAATGATACCCGAACCAAATAAAAAGAAACGCCCACCTAAAGAACGGC
GGAAACATCGAAGTTCCGATAGTCCAACCATCAGTCCAGCGGCTAGCCGA
GCCAGTCCTGCTACTCCACCACCGCATCTTACCGCAGACGATTTACGTAA
GACTGGGGGAGGAGGAGGAAGTCAGCGTGGATCAACAGCATCAACAGGTA
GCCCAGAACACAGCGTTCCGACAACGTACATTCAACATCCATCAGAAGAA
CTACCAACGGCAACGTCATCTAGCGTTTTGAGTTTGTTTGTACCGACGAC
TGATTCTGGTATATCAATACCTATGGATGCACGCGGTGATCAAACACCCC
TCGACTCATCTTCCCGCCGGAAATCATTCAAAACGAAAACGGATAAAACT
GAAAAACCACGCTTGTACGACGAACTTCAATTATACGACTCTCATCGCaa
agacaaacaaaaacaaaaagataaacAACTTTATCCGACACCCAAACACG
AAAAAAAATACGTCTGTCATGAATACAAAGAACTAAGGTATGACCCACGT
TTTATGTCACCACAAATCACACCGAAGCATCGAATGAATATGCAAGTGGC
TTCTTCATCTAAACACAAGTCTGACCGATACTCTGACCATGGTTTTGTTG
ACGGATACATATCTGAAGAATCGATACAAGCTAAAGGGTGCTTTTTCAGT
AAGtccaaacaaaagaaaggaaAGTCAAGCAAAGActctaaaaatgataa
aaaactgaAAGATGTGGTCGAAACATCAGAAAAAGAACTTATGATTCATC
GACAAGCTGAATTACAATATCAATTAAACGCATCAAAACATTCGCTCGAA
AAGCAAATGCGTAAAATGCGAAAGAAATTCGAGCGAGCTTTACAAGCGAC
TGATGATCGTTTCCTGGAACAAAAACGTCGTGAAGAATCTTTTCACAACC
AATTACGAAATGAACTCGAAATTATTGAACAATCACTTGAGCGTGGCTCA
AAGAAAAATGTCGACGAATTCACTCATCATATACGAACGGAGTTGAATAG
TTTAGCGGAACGATTAACGAAAGGAATCGATATTAAATCGAGTGACGATA
CCGACGAGCCAGGATCACCAGCCAAGAGATTGAATAAACGTGAATCTGCT
GTAGATCTTGATCGGAATATTTCGGTCAGTTTACAAAATTGCGAATCACC
TCGAAAGGGGAAAAAGAAGCACTCAGACAATAATAACATGACAGaCGAAA
CAATCATTCAAGATTACGAGGAACGTTTAAAAGCTTTGGAACAAGAGCGA
CAACAAAAAGAAAGCacagaaaaagaaaacgaagagcTCCGCGCGCGTGT
TCTTGAACTTGAACGCCTTGTGCGTGCGAACAATGGAAGCACAGCAGTTA
CGTGATATACATAatgatttctttaaaaatggtggaaagagtgaGGCCCG
TGTTACTGAAACACACTGCGTTCACTGAACGACGGAACGATAGTGGTAAC
ATGTGACATTCGTTATGTTTCCCTGTGTGACAGGAGCATTTTGGAATAGT
AAGGCTGTGTCAGCTTACGTGAACACTTACAACAATTCCTTAAAGCACCC
CAAGATGAGTGCGCTTGTTTGGATTTGGCACATTGAAAACTGAACACAAA
TAAATGATATCATGTCAATCCAGACAAAGTATTTCGGCACTCAAAATCGA
AACatttcatttcaagttttattcgTTTTATTTCTTTTCGTTATATGGAA
TTATTTAAGGTATTTTATGTAAAGaatttaatattttgtttttcatttgt
acaATGATTTGCTTTCTTAAATGTTTTGTGCAGTTTTTGCTTTTATACAC
TCGAAGAAATTAGATAAATTGGAACTTATTTTATTGTTGGTTTGGGACTG
AAATATCTCCTTGCCTCACCCAACTACAGTGGGTCTTTGTCTTTTTCACT
ATAACAAATCTTAGAAGAGTTGG
Run BLAST on NCBI

transcript from alignment at sc0000517:103775..118305+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025035 ID=TCONS_00025035|Name=TCONS_00025035|organism=Clytia hemisphaerica|type=transcript|length=14531bp|location=Sequence derived from alignment at sc0000517:103775..118305+ (Clytia hemisphaerica)
AGGCAATTTCTCGGGAAAGAAAAATAATCCATGCCTTTAAGCATATAGAG
TCCATCATGGTTTCAACAGGGGATTTCTTCAGTACTGGAAATTGTCCTTG
GCAAGACGAagaaattaacaaaacaaactaataaCCTGAAGCTCGAAAAG
AAGACCCTTCAGACTGATACTCCTTGAAAATTACTAATGTTAGGAATTAA
TACTCTAATTAAATGGGTTGGTTTCGGTTTCCCTCAGGCGTGCCATTTAA
ATGATTACGTATAGTAACAAATATTGGTTCCTTATTCTAGGCTCTTTTAG
CCTTAGTGACATTTTTGTTTCCTTTCCTTACTTTACcgtttctctttttt
atagGAAGGAAATACACCGTGTCATGTGGCTTGTTTGAACGACTATTTTG
AAGTGGTTGAACTCCTTATACATGTCAAAGCAGACTTGAACATCAAAAAT
AAGGTATGTAATCCATAAGTTTTCATTTGTGTGACTATATGGAAACAGTC
ATACaacactttcatttttaaacaCCTACTACTTTTAAGAGCAAGTAAGT
GGGTCTTGTGACCGaagtcggaggcgacccaaagGTTTAATAGTTATTAA
TCCAAAGGTAGGGGAGGATGTcattctttctccctggatttctccattTA
TCTTTGATCCTTCTTTTTAATTGCtgaacatcaagcagagaggtatcaaT
ACCGTTTTTGTACCAAATACGAACTCTGTGGTATAAACCGACCGAGGAGC
CGAATGTTCTAACTTTACACAACTCGTTCATATCTTTTAAGAGTTGGTAC
TTAATACAATCATGGCATTGCAATTCAAATCATTTCAGGGAAGTGTAAAc
agaaatgaaatatttcagCAACTTAAGAAGCTGCTGAGATTCTCAAGATA
TCATTTCAATGAGTTACTTTTCATACTCATACCTTTTTTATTGGAACTTA
ACAACATTGCTTTGCTGATTATAATGACTAAAGAAGTCCATTAATCCATA
AATCACCATTACTGTAAACTTGTCTTGAAGAGCTTCTGNACTTAACAACA
TTGCTTTGCTGATTATAATGACTAAAGAAGTCCATAAATCCATAAATCAC
CATTACTGTAAACTTGTCTTGAAGAGCCTCTACAGCAAAAGGTTACGTAA
AGTAGAATAGCCGCTAAAGTTGGATATTTCAGTAGTTTTTGGAATTGGAT
TTGCACAATGTTAGGTATCGTAATTTCTTACAAAAAGACCATCTTGCATT
TAAATTCTGAAGGCTtgcatatttaaaaaattgacatTGCCCTCTTCATA
AACCACTTAAGACCTCATAAAATTACTTAGCTTGAGAAATCGTTTATTAT
AAAATAACAAGAGACTTAGCAGTCTTGTCAGAGACGgtttatcaatttta
ttaattttattcGTTATGATGATTGGAGCAAACAACGAAAAATTGATAta
tgatatatatttttctagacataaaaatttgatgttctttCCAGAGATAA
GGTCTTTAGCAATGTTCTCATTGTGATCAGAACTCAGTaaaagaaaaatg
tcaaaacttctCTATTTTTTGAATCAAATGTAGGATTAACTTTTATTTCA
GTAGTATTGATATGAAAAATATCGATGACTTTTTCTCGTGAGAGGTTCGA
TAAGGGAATCAGGCTAACTTTGATTTCTCTATGTTATTGTcgaatttcta
aatttaatttctcctgagttttatttgaaaagtgaTTAGTACTTAGTAGA
ATTGTTTGACAAAGTTTGGTTCGGaataaaaaagaacattttaaaaattt
ccataagTTGTTACAGAATAGTTGAACGTTGGTCATCAAATTAAGCCTTT
CCATGCACTTGTGCTAGAAAGTTTTGGTGCCAAAATATTGCTGAATATAT
CATATGAAATAATTAGCGTTCACAATTTTTGTTTGGATTGAATATCAATG
CCAAGCTTAATGTATATAACAAATTCGAACGATGAAATAATACAACTATA
ATTTTACAAAGTATGTAACCTGAAAATGGAACCCAACAGAAGGCCTAGAT
CATCAAGCTGTAGACAGTCTCagagcaacaaagaaaaaaatcactcttCC
AATTTGACAAGTCATAGAAGACGGAGTTATAGTGATGGTAACAAAGGAAT
GAAAATAGAAGAACATCtttcaaagaaaaagagaaagcaAGGAGGAAAGC
GGGACGATGAAAAAGCTACGAGCAAAAGAGTCCATTTTGTTAACAAATGT
GAAGATATGGTTAgcatcaatgaagtataagcccgaagggcttaaatcga
atcttcaacctttctcagacaagaaaaagtgaagccttaaaatatgcgcc
gtatttttgacgacgaattgaatctagcgattcctttgttttccaGTGGT
ATCTTTTTACCAAATTTAGATGTAAATTTTGGTTTCAACCTGCCATTTGT
GTATCCAGGCGGACTGCGCTAGGCcgtgcaactttggtaggaaTCTGGTA
GGCTTCAAGTCCTACAAAGGGGATttgattctagcccttcggacttttac
ttcattggttagCATGCCCTTATACCATTTATATGGAGCTGATGCTAAGA
AAGGCCGAAGTAAAATAAAAGAGACTGTGTGAAACGATTAGTATTCAGAC
CCTTTATACCGAGACAACCCTGCCTCGTAGCACCGGTGGAGCTTTTTGGT
GCAGCAATATCGCAATATTCCAAGGAGGATAGAAATACTATATTGTCTCA
AAGCTTAAAGAATAAAGCGCGAaaggttttggagtgcaatattctacatt
gaatttcgaatggggatgtaATAAAAGTCAATTCCccccagtggggatga
aattgtagggtaGTTTTTCCACCTGGTTCAAAACttctgccaaattttcc
agtggggctggggtcatAACGGATCTTTAACACAGGGGTGTACCGAGTGC
TGACTCTCTCATTATCGAGTAAGAAAGTAAAAGGAATTTTGCTCGCTTGA
AATCGTGAAAAGTAGGAGTAACTAAGCTTAAATTTTTTACAGTTCTAAAG
TGGACATTTGTTACAGAAACAAAAAACCCTAAAGGACCCTAAAGtccaat
atttgaaaaaaaaaaaaaaaaaagttcaatattAAGGTTTAAAGAATATG
TTTCAAGttacgctttttttttataagaataacttctataagaatatcag
ggtgagatttcgggtttaaaacaataggcctattgtttagaacaatagaa
aaataagaataatgcttaccctcaaccaaagtacactattcttataaaaa
aaaaagcgtgtacatttTTTCCAGACAATTTATTAAAAATCGAGTGGTTT
TGAAATAAGAGGGATAGAGTTAACCTAAAAAAATTGATCGTTCTTCAACA
ATCTTgaattaatttattttcagttatTTTGTGAGGAAAAGTATCATGTT
TTACTTCTTTACACTTTAGgatgcatttacaccactaCACATAGCCACGC
TAAACCACCACACCAAGTCAATGGTATTGTTGATGAAAGCTGGTGTCAAC
AAATCTGCTCAAGACGCTGTAAGTTAATTTAATCATTCACTGCTGCTGAG
CATCATTTTTGCCAGCTTGAAcgcaacgttatttcaacgtttatttaacg
ttcacaacgtccatataacgttacatGAACGTTGGAACAAAGTTACGTGC
CATCATGTGGGTTTGAATTTCTGAAAGTATGAATTGACAAAGACTTTGCA
TCAAAGATTGAAATGAATTCAACGACAGCAGTTTAAAGCGGACTGAGGAC
TGAAGTAAGATTTAAACTTGCAATTTTTACATCGGTTGTGTTCTGCTCTA
CTACTGAGCTACCCAATTTAGCCCATACTGGAAGCTCATGCGTAAACAGC
TCCAGATATATAATCTTTTAGTGAAAGAAAGTTATCTATAATTCGAAACG
CTCTTACTTAGAATGGTAACACAGCACTGCATATGGCAATACAAACGAAA
TCATACAAAGCATTGAAATGTCTTCTCAAACATGGTGCTGATGTTAATAT
ACAAAATCATGTAAGATCTTATATTCCTTTTTCCCCAGAACAGCTGATCG
GTTCTACTAATTTTCATCGTATAAGGCGAAACTTTTTGAGTCAATTCTAA
ATATAAGGCATTTGATAACTAACGGATTTTACACAAAAAATTGTACCGcc
ttattttctttcaaaaagaaaaattgatgaaatcaGAATTACGGCAGCCG
AaagaaaacaaaccaaaaaagttttgattttgacaacAGGATTTCTTGAT
TGGATTATAAAGAGGATTCGATGCCCCAAAACATTAATCCACTAATAAAT
TGACAAAGTGTTTCCATATTAATTTGATGGAAATGAGTTTCGGAAAAAGC
TAACCATTTTCAATCGTTTCCGTAAAATAAAATACTGTTCGtcgtttgtt
taaaaaaaatctataaaccCTTTTGAAATGATAAAGTTGAAGCTTGATTG
GTAAAGGTTGTCCTGTGTGTTTTGAGTTTATTTGGAGTTATGTTTTCGAT
CAGGCGGACAGTATTGTACGCGAGTGGCGCACGCTATTATGTTCATTCCG
ATGAGAGCAGTATTGATTTGGtaacaaatttttaatttgagtTATGTATG
ATTTAAAAAACTAGTATTTGAATCTTATGTGCCTTTTAGAAAAATGTTAA
TTGTCTTGAAGTTAGCTCTTGCTGAGTCGAACTCGAACGAAAAGTttaat
ttgttcaaattacagAGGTATTCGAATCATAAAGAGTATTTTAACAGAAT
TTTCTCTTTGCAGGAATTGAGAATTAGTTCGAACTATATAActatttttg
aataaaagaagttcgaattagcgagagttcgTTGCATTCATGAGGGGgtt
ttatctaaagaatcctgcatttactaaaaatagacaaaaagaacgagaaa
tttcataaaaaatgacaaatacGACAAATATCgaatattttcattattct
aGGGTGGAAACACGCCACTACATCTGAGTGCGGAACTTGGAAACGCACAA
TATGTGGACTACCTGCTTAGTGTGGACCAGCCTATTGAGCTCAGTCCCAA
TAATGTAAGTGAACTAGTTTACCACAAGATGGATGAGTCCGCAACCCAGC
GGTTTGCAGCgtgtttgataaaaattattttttgatgcTTGCTGTTATGG
CATGATGAGATATTTTTATGGAGCGTGATGGCCTGATTAAAGTTGATCGA
TCAGTAGTAGATGCTTTGCTTTGATGGCATCATCATAATTTTTGTTATGC
TAATTCATGCTGAATTGAAAAGAGCCAATAGTGTAAGGCAAAGTGTTTGG
TTGTGTCCACTTATCAAAAGAAGCTTAGATTGAAATGAAAGCACATCAGG
GCAATGAACAAAGCTTCTTTTAAACTCAATGGCCTATACAGATTCAACCC
TTTCATGTTCAAACTATTGAGCTTATGTCTAAACTATTGTAGGTATTTTA
ATGTCGATTTTCACCTTTTAGGTCGGGGATACAGCAAAAGACATCGCCAT
CAGAAATGGATTCAAAGAAATTGCACAAATGATACCCGAACCAAATAAAA
AGGTATGATGCGCCCTTTGTattcaaacatttttgtcaagtGTATTTTAG
TGTGAGCTCAATCGAAAAACAGGTTTCGCCGGTACCGCATTACATTGCCG
TGGATAggagaaattttgaattttactcCTTCTAGAATGCCTAAAACTAG
TGTTTTCAACAAGGTTTTGGAGCAGAATTTTACTCAATCAGTGGAAATCT
TCATGGTTGTCCCAGCTGCTCCCGCGGCCCCTGGAATATATTACACCTAT
CTACACTACTACTGCACTCTTCTAAAAACATCCCTGGAAGCTGGACGCTA
GCTTTATCTTTTATACCTAGATCTTATTATCTCCTGAAAGTATCGCTTGA
ACCTGCAGTTTTTTAAAGCGgtttttatctgattttcaTACTGTAATTTT
GACAGGAGCTATTCAGCATATCTGATCCTTCGTTTTGTAAAATTTAAAGG
GActtaagtaaaaatactgacAGATTCGTATTTTTAAGACAGCgattgga
aacttttttttctcgGAGAAAAGACTACCTTTGTTTGAGCTGCTTTATCT
CTATAGAGAATCCGAACGGTTTCagagtgtttttttctggaGGCAGGTTG
GGGAAACTTTGGCGTCAGTTGGCGTAACTGGTGTGGGCTTCGGACTGGTA
AAAGCGTTATAATAAGTAACCTAAATTCTAGACCTGCAAGCCTCATTTAA
TTATATTATTCAATAAAAAAGGGTAATTACACTGAATTAATATCATAAAA
GAGCTATTTTTATCCGAAAAGGAAACCATTGAACTTTTGTTGTCGATTGA
AAATGAAGCCTTTTGTATTTCCTTTTATCTGTCAAAATACAGTATATTAA
TTTGTGTGTGCACAACAAAATGATATTGTCCATCATCCTAAAGTattttg
ttttaactttttttctcattctacCTCAGTCTGAAGTAGATTTCTCGAAG
CCAAGAAAATGATTTAGGAAAATTCGAATATTcatgaagaaagaaaattg
cTAAATTATACATGAGAGTCAAATAGATTTTATGTTGTACGAGATTTATT
GATAAGTGATCTCGCTAAACCCAACCTTTTTTCATACGTAttatataaat
cttttttcGCCTCTAAGAGGATTAAAAACACGAACCCCTTGCAAGGAACT
TAGCCTTTCGTTGATCACGAAATGACTTCTATTTTCGATCAAATTTGTTG
ACAATTCAGTCAATTTGCTATTATAACGATCTCAAGGTTTCTTCATTGTT
CTGATTAAACATTGTTTAAAACAAGTTTGTTGAATAGTTGAAGGTGCACG
AGGTGCTTAAActcgattttacaaaaaaaaatcgttACCCAGTGATAATA
TGGTTTTCACGTGCTGAAGTAGAAGCAGTTATTAACAGATTCATTAAAAA
ACTCTCATACTTTCGTTTAGAAACGCCCACCTAAAGAACGGCGGAAACAT
CGAAGTTCCGATAGTCCAACCATCAGTCCAGCGGCTAGCCGAGCCAGTCC
TGCTACTCCACCACCGCATCTTACCGCAGACGATTTACGTAAGACTGGGG
GAGGAGGAGGAAGTCAGCGTGGATCAACAGCATCAACAGGTAGCCCAGAA
CACAGCGTTCCGACAACGTACATTCAACATCCATCAGAAGAACTACCAAC
GGCAACGTCATCTAGCGTTTTGAGTTTGTTTGTACCGACGACTGATTCTG
GTATATCAATACCTATGGTAGGTTTAACTTTTAACTAAAGGCTTTTAATA
AGATTGAcagttttaaaatattattgGGGAAAAGTCAGTTATAATTCTGG
GAGCGTTGTCTCAATAGTCTTTGACTTTCCCCCGACTTTCCTCGATAAAA
TAATTTACATATTGGGCcaaaaaaaaatcgtgcaccccctgttgaggagg
tccatttccgttccaagggggtaaggtttgaaatgcagtggaattccata
agggtagacgaaaatccgtcaaaaataagcggaattccaagggaataatg
attgaaaatttgtaaaaattcggaattccagaggcgTATGATCCttaaat
tgcctggaattccataggggtaggtcacaaaaggttggacctcctcaaca
gggggtgcacggtttttttctggaaaagcccattgttaCAGTGAAATTTA
GAAGATGTTTTTTATCGTTTTATGCTTCTGATACCAGTGCGCCAACTTTA
CGTAATCTTTTCTCAAAGTCTTCTGAGGGATCGATGAACCTCAGCTCTTC
TATTTTACAACCCGTCAATTCAGTGAAGTCCATCTTATGGTATAAAGCTT
CGTGACGTTTGTCTTGTTTTTCGAACGTCTTGAATGAAATTTCGATTGAC
ATGGTGAATGACCCGCGTCCAGATTCCGAAATTTTGAATGGTGGTTCGTT
GCAACCTTAAATACAACGGGAACATAAGGTGAAGAACTTAAAGTCAAAGT
TCTTGTTCTTTGCCTGCCTCTGTTTATTCGGTTGAGATTCTACTATTCTT
TGCACGAAGAGCTGCTAAAGAAACTTCAATTGATACTCTAAAGTTTCTGA
AGAAAAGTGTTTTCTATCTATTTTTATCTCACCTCTTCTAGGCTTTGGAT
AACTTCTTGCTAGATTCAAATCAAAAACCTTATCCACTATATTTGATAGA
TTTTCACCATCAACTCCTCTCATATACACAGTCCAATCATATGTTGGTGT
CTTTTCCTCGTCTATAGGCTCTTCCTTTGGGATTGCTTGGTGACTCAATT
CCACCTTGATTATGTAAATCCTTGTGCCATTTGTCTATGAAAGTTGTTGT
GAAATTGTTACTAATAGACTTCACTGATTTCGTACGAAGATTTTGCTATC
ATAACCTCTTGGGTAGATAACCCACATCCCTTGTGTGACCACATAAGACT
TATAAGATCAAGCATTTAAGACATTTAAGACCACTTGATCTCAAAAACAC
TTCTTTTCGGCTGAGGCTACTGGGCTGAGCGTTAAAATTCTGatattaaa
aatgtttaaacaAAGACTTACTACCTCCTCATTGCTGCTTGTCACAAGAA
CCTGATTTGTATTGGTTTGTTTGTCCTCCATTTCTTTGATTCTCTTTGAC
AATATTTCCAACCGCTCTTCATAATCGTCCTGCAGTTTCCTCCTCTCTCC
AATTAGCCTCTATTAGATCGTATTTTCCTTATCCTTTACTGTTTTCTCCA
GTTctaatatttgaaagttttcgcCCATCCCAACCTGTTTTGTGACGGTA
GGGATCTTCGGTTCATCATGTTCAGTTTGATTTTCCATAGTAGGTTGTGG
GTGATTGGATACTGATTGGATAGTTTTTCTTGACTTATGTACCAGAATTA
GCAAgcaacttttcaaaaagttttcaaacaattttaacTTTTAGCCTCGG
AAATAAGACACAGCCTTCAAATCGTTTACCTTTTAGCAAATAACACAACA
TATTGACGACACATCTTTTTTACCAGAGCTTAATTTTACTCTACTCAGCA
TATTAATATTTTACCATATTACACCACCATTCGTTTGAAAAAATggactg
ggacggtttaagggtggtaaaacggttaaaaaaatgcccgcgtggcaata
ggcggctacggtcgaaaaggtgtttGTATTTTACCTGATTTTAATCAACT
AGTCGTGGAGCTATAGCTCTGTAAGAAATTCTTATTCTCAAAGGATTAGA
AGAACCTCCAGTGTCGGGTTTTAGGGtgttaaaaatttatgaaaGGGAGT
CATAATTTCCTTAAAAGTATGGCTAAAAGAAACACTCTCCAGCACTGATT
TGAACCCCACATACATCTGCCACTGACCCCAACGTGCTGCAAGCCATACC
CGAAAGGAAACTTTCTTAACTTGTAACTTGCACAACGCCAGTGAAAAAGC
TTGCTCTTAATTTTTTATTAACTTTAATACGATTGAAGACCATATTTCCT
CCTCGCCTATTTTCACAATCGGTCAAGTTGTGATTTTTACAAAGTATTGC
TAAATGACAAAGGAAATACTCAAATCCATTGCATCGACTCAACGTTAATG
AAAAAAGACGAGAGTTCATTTTGACAACAGTCCTCGAATATCCGATCCGC
ACGATACGTTTTgtctgtgacgtcatcacttctTAACTAGAAGATTGATT
ATCTATTTCCCGACGTCCTTTATGGCGAAATTTTAGCGGGAAGTTTAATG
TGTTTCCTAACTGTTTTTCTTCGTGTTTTACAGGCGAAGAAGTGAAGGCG
TGAAAATTGGTGTTTTCTTCATTGACGTTAAAAGAATTATTCAGCAAGTC
ATTACTTCGTAGTAGTTTGTGCCGCGATTGAAATCACGAAAATGCTTTCC
ATAATATAATTAACGAATTTCGCGTGCTTTTATCTCTTTATTATATGATG
AATAAATTCCGTGTTTTAATTGTGTTTTAACTTTGCTTCGGCCCTACAAT
ATGGTGTCGTTCACAACCCATGCTGCCGAAATTTTGACAATATGAGTTTG
TTAACTTTTCTCTAGTTTTCAAAAGCAATGAGTATCTCGTTTTTGCCACC
CTAATTGAAAACAAGAACTAATTATCGTTACTTACGTCATTTAGAAAGCA
TGATACATATCATGCCGTTCATAAGACGTCCAAGGTAAACCTAGATAAGG
ACCAGTTTTCACGAAATGTCTTTTAAATTGCTTTATCTTTCTCATAGCCT
TTATTTACCATCAGATTACTTCATAAAAAGGGCGGTATCATTAAATGATA
AATGAATTTTTAATGAGCTTTTTGTAGCATGCTAATTGAACGAAGGCAGT
GTtcttcccgaagaaatcatgttTACTCCATGTGTCCATGTgtctttttt
cataagaaaagtACCCGCTATGCACAGAAACTGCATCCAAATGCAGTTCG
ATAGCAGCCCAGAGGCAAGGGAAAGTCTGACCAATAGATGGCTCTAAAAT
CATTTACACTACGGAGAGGGGTTCATTTCAATTCTTTCTCCCAAGTCGGA
ATGACAAAAACTTATTTTCAACCCATAAAATTCCATAACTCAAAACTTGC
CTTTTTTATaacaaaagttttgtttttgatttcaaatatttGTAAATGTT
TACCAGCGACAACCTTTTCTTGCATTCAATATAACATATCTTAAAAAGTT
GATGGGGAAAATGATACAGGGTGAAgggtttcttataaaagaattgTATA
CTTTACTAAACGATTGAAGACAGTAACAATAATTCTACATCAAAATACCG
GAGGAAGTCTTAATTGCTAATTTTTGGatgtcattttctttttgtcaAGA
TATCGTCTTTCTTGCTAATGAATGAATTGaatattgtatatttttgtttg
ttattttgtttatttgtcgTCTTTATGTTTTCACATACAAAGGGCTGAGA
CTCTGGTGTTGAAATAGCCCCTGTCGCCACCTCGTCTCTCTCGGTCTATC
CTTAGAGATAAATGCATTAGATCTTCTGTCGTTCATTTGAGAAGATCTGT
TTGCGGAGAACAGATCAAGATTTGATCAATGGAACAATCTGTCTTCTTGT
ATTGGATTTGATTAACTAGTCACTTTGTAATCTTGTCGTTCAGATCACTC
TGATATCGTTGAAACGGCATTCGATTCTTTTCCAAAGTCTTGGCTATCAT
TGAAGTTAATATTGAGGTGGTTGATGGATTAAGTTGACATTAAACTTCAG
ACAGGAATAAATTTTCATCAACATTTAAATTTGGTGAAACATGGTAAAGT
TTACTGGCAGTCCTAAgcaagcaaaaaatgtttcataCATTCGAATGGTA
GAGGAGTCTTCCTCTACACCACATGAAGTGATCGACGTTGAAGAATATAA
CGATTACCAGCATGGTGGTATTGCTGACAAAATTGTTGAACCCATTCAAA
GATGTGATTCTCCTCTTTTCATACTCATTGTACGTGTATTGAAACTGTGT
TCTTTTTCGGTGATTTCTCATTCTTGAAACCATTAAGATTTGGTACCATT
TGAATTCAACTAGCTTAAAAAGCTGGTTTTGACTATGGTGTGTTTCAAGA
AttatgaatttaaaaaagaaatttttaaataataatgTTGCTTTAGGTAC
GAGAAAAAGTAACGTTTTCTATATATATTTGTCTTATCCCACTTCAGCCA
AACATGCACCATTTTGGTTAATGtgtactttaaaaaaattcaaatataac
GAACtttcttttaacaaaatctcTTTCTAATCTCCATAGGATGCACGCGG
TGATCAAACACCCCTCGACTCATCTTCCCGCCGGAAATCATTCAAAACGA
AAACGGATAAAACTGAAAAACCACGCTTGTACGACGAACTTCAATTATAC
GACTCTCATCGCaaagacaaacaaaaacaaaaagataaacAACTTTATCC
GACACCCAAACACGAAAAAAAATACGTCTGTCATGAATACAAAGAACTAA
GGTAAATGATTGCTTCTGATGATTTTTCCCTCATTTTCATTGATAATCCA
TTTATTACAATGATAGTCTGGAgagaaaaatacttaaaatgaaTGGGATT
ATCATTTATCATTTATACAGATATAATCCTTCCTTTTTTTACATAGGGGT
CATCTCCTCCCCTACTCctcctattttgataaaattaaaaGGTTAGATAA
AGAATGATTAAGAATTCAACTTAAACCAAGGTGATCTTGCTATGGAATAa
cgaaaatttattcaaaatatcgTTTGTCAACAGGTATGACCCACGTTTTA
TGTCACCACAAATCACACCGAAGCATCGAATGAATATGCAAGTGGCTTCT
TCATCTAAACACAAGTCTGACCGATACTCTGACCATGGTTTTGTTGACGG
ATACATATCTGAAGAATCGATACAAGCTAAAGGGTGCTTTTTCAGTAAGG
TAAGAACGATGTGATTCATTTCCTGTGTATTATCGTTTTTTTGTGCTTTC
TAACAGCGCCAGATAATTTTCCTAATGTCGTATTCCCTGGCGTTCATCAC
TTACGTAAATGAAACTCGGGATACACAAGGACTAGGTTAATATAAATCAA
CTCGCTTTATATCCTTTTTGACCAGTGGTAGGTTTTTCAAAGTTCAAGAT
TCTATTTCATTTGCAAGTGACCGTTCATGTATTAACCAGTGGTGATGATG
ATACAAATATTCCTGTTTTAAATACGGTTTCTCTAGCATAATTATCTAGA
AAACCTTATAATAGCTCACCGACGTATTTTAACCTCCTCAGCATATTTCT
TCTCTTTCagtccaaacaaaagaaaggaaAGTCAAGCAAAGActctaaaa
atgataaaaaactgaAAGATGTGGTCGAAACATCAGAAAAAGAACTTATG
ATTCATCGACAAGCTGAATTACAATATCAATTAAACGCATCAAAACATTC
GCTCGAAAAGCAAATGCGTAAAATGCGAAAGAAATTCGAGCGAGCTTTAC
AAGCGACTGATGATCGTTTCCTGGAACAAAAACGTCGTGAAGAATCTTTT
CACAACCAATTACGAAATGAACTCGAAATTATTGAACAATCACTTGAGCG
TGGCTCAAAGAAAAATGTCGACGAATTCACTCATCATATACGAACGGAGT
TGAATAGTTTAGCGGAACGATTAACGAAAGGAATCGATATTAAATCGAGT
GACGATACCGACGAGCCAGGATCACCAGCCAAGAGATTGAATAAACGTGA
ATCTGCTGTAGATCTTGATCGGAATATTTCGGTCAGTTTACAAAATTGCG
AATCACCTCGAAAGGGGAAAAAGAAGCACTCAGACAATAATAACATGACA
GGTATGTTTATtttacttcttttttctttagaataAGAGTTCTTTGAAAC
TATTAAAATGTTGGTTCTCTCGAAACGCCTTTCAACAAGTGTTCCATAAA
TTTTATGCCTCAAAACATGTTTTTGTTAATGTAACATTAACAAGGATTTT
TACCCAAAAATATCCTGTAACCGCTAAAATTAAATTCATCCAGCCATCCA
CCAATTGAATTCTTTCTAAAATGACTTTTTCGGTCCTCGTCAAATTAAAA
TCCTTACAAAGTTTCTTCCCTAAGGTATCGAAAGGTTTTTTTGAAACGCT
TTCTACTTCTACATTAGGCATGCTCACTCATTAATGTTAGTGTTAAGTTA
AAAAAAGCTAAGTTGTGAAATTAATGCAATCATCGtctttatttttttac
agaCGAAACAATCATTCAAGATTACGAGGAACGTTTAAAAGCTTTGGAAC
AAGAGCGACAACAAAAAGAAAGCacagaaaaagaaaacgaagagcTCCGC
GCGCGTGTTCTTGAACTTGAACGCCTTGTGCGTGCGAACAATGGAAGCAC
AGCAGTTACGTGATATACATAatgatttctttaaaaatggtggaaagagt
gaGGCCCGTGTTACTGAAACACACTGCGTTCACTGAACGACGGAACGATA
GTGGTAACATGTGACATTCGTTATGTTTCCCTGTGTGACAGGAGCATTTT
GGAATAGTAAGGCTGTGTCAGCTTACGTGAACACTTACAACAATTCCTTA
AAGCACCCCAAGATGAGTGCGCTTGTTTGGATTTGGCACATTGAAAACTG
AACACAAATAAATGATATCATGTCAATCCAGACAAAGTATTTCGGCACTC
AAAATCGAAACatttcatttcaagttttattcgTTTTATTTCTTTTCGTT
ATATGGAATTATTTAAGGTATTTTATGTAAAGaatttaatattttgtttt
tcatttgtacaATGATTTGCTTTCTTAAATGTTTTGTGCAGTTTTTGCTT
TTATACACTCGAAGAAATTAGATAAATTGGAACTTATTTTATTGTTGGTT
TGGGACTGAAATATCTCCTTGCCTCACCCAACTACAGTGGGTCTTTGTCT
TTTTCACTATAACAAATCTTAGAAGAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014076XLOC_014076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025035-exon-sc0000517-1491911889:103775..103776TCONS_00025035-exon-sc0000517-1491911889:103775..103776Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:103775..103776TCONS_00025035-exon-sc0000517-1510915933:103775..103776Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:103775..103776TCONS_00025035-exon-sc0000517-1575043694:103775..103776Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:104133..104227TCONS_00025035-exon-sc0000517-1491911889:104133..104227Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:104133..104227TCONS_00025035-exon-sc0000517-1510915933:104133..104227Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:104133..104227TCONS_00025035-exon-sc0000517-1575043694:104133..104227Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:107244..107342TCONS_00025035-exon-sc0000517-1491911889:107244..107342Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:107244..107342TCONS_00025035-exon-sc0000517-1510915933:107244..107342Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:107244..107342TCONS_00025035-exon-sc0000517-1575043694:107244..107342Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:107736..107834TCONS_00025035-exon-sc0000517-1491911889:107736..107834Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:107736..107834TCONS_00025035-exon-sc0000517-1510915933:107736..107834Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:107736..107834TCONS_00025035-exon-sc0000517-1575043694:107736..107834Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:108777..108878TCONS_00025035-exon-sc0000517-1491911889:108777..108878Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:108777..108878TCONS_00025035-exon-sc0000517-1510915933:108777..108878Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:108777..108878TCONS_00025035-exon-sc0000517-1575043694:108777..108878Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:109296..109376TCONS_00025035-exon-sc0000517-1491911889:109296..109376Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:109296..109376TCONS_00025035-exon-sc0000517-1510915933:109296..109376Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:109296..109376TCONS_00025035-exon-sc0000517-1575043694:109296..109376Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:110795..111091TCONS_00025035-exon-sc0000517-1491911889:110795..111091Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:110795..111091TCONS_00025035-exon-sc0000517-1510915933:110795..111091Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:110795..111091TCONS_00025035-exon-sc0000517-1575043694:110795..111091Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:115614..115825TCONS_00025035-exon-sc0000517-1491911889:115614..115825Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:115614..115825TCONS_00025035-exon-sc0000517-1510915933:115614..115825Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:115614..115825TCONS_00025035-exon-sc0000517-1575043694:115614..115825Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:116108..116273TCONS_00025035-exon-sc0000517-1491911889:116108..116273Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:116108..116273TCONS_00025035-exon-sc0000517-1510915933:116108..116273Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:116108..116273TCONS_00025035-exon-sc0000517-1575043694:116108..116273Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:116635..117175TCONS_00025035-exon-sc0000517-1491911889:116635..117175Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:116635..117175TCONS_00025035-exon-sc0000517-1510915933:116635..117175Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:116635..117175TCONS_00025035-exon-sc0000517-1575043694:116635..117175Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1491911889:117577..118305TCONS_00025035-exon-sc0000517-1491911889:117577..118305Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1510915933:117577..118305TCONS_00025035-exon-sc0000517-1510915933:117577..118305Clytia hemisphaericaexon
TCONS_00025035-exon-sc0000517-1575043694:117577..118305TCONS_00025035-exon-sc0000517-1575043694:117577..118305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000517supercontigsc0000517:103775..118305 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181884	0.232935	0.0292167	0	0.00147715	0.354492	27.9859	21.5563	14.6196	14.3091	1.2438	11.1345	4.08089	4.28348	2.95424	3.52739	2.91978	1.06421	2.95626	6.26864	2.87138	0.135567	1.85126	1.47204	1.66418	1.76677	3.4875e-05	1.25343	0	0
Blast
[Close]
BLAST of TCONS_00025035 vs. Swiss-Prot (Human)
Match: ANK2 (Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 2.183e-18
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 2 
Query:    2 GNTPCHVACLNDYFEVVELLIHVKADLNIKNKDAFTPLHIATLNHHTKSMVLLMKAGVNKSAQDANGNTALHMAIQTKSYKALKCLLKHGADVNIQNHGGNTPLHLSAELGNAQYVDYLLS-VDQPIELSPNNVGDTAKDIAIRNGFKEIAQMI 460
            G TP H+AC  +  +V+ELL+   A +    +   TP+H+A    H   ++LL++ G +    +  G TALHMA +    + ++CLL++GA V+ +     TPLH+++ LG  + V  LL  +  P   + N  G T   I+ R G  ++A ++
Sbjct:  398 GFTPLHIACKKNRIKVMELLVKYGASIQAITESGLTPIHVAAFMGHLNIVLLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRLGKTEIVQLLLQHMAHPDAATTN--GYTPLHISAREGQVDVASVL 549
The following BLAST results are available for this feature:
BLAST of TCONS_00025035 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK22.183e-1831.82Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4[more]
back to top