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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024916 ID=TCONS_00024916|Name=TCONS_00024916|organism=Clytia hemisphaerica|type=transcript|length=1436bp
GACTCCTTTTAACGcagtaggcttttaaatggCACAAGTTTGGGTATCTT
CAAGAGTTTCAAGCTAGGACTTAAAAATACAGTCACTGACAACTTAGATA
TTTCAGTAGCTGCAAACTTATGCCATATAAAATCCTATCTAAACTTTCAT
CCTTAGGCACAAACCTCAAAGATTAAGGCAGTTTATTTTTGTATAATGAA
TGAAAGTGACATATAATGGTCATTTTGATCATTCATATCAAAATAAAGAG
TTCTTTTATTACCATACAGTGAAATCTATGTTTAAATATTCTCAACTAAA
GGCTTCTCGCTTGTCTTATTTAGCTGCttaaattttgagatattttccaA
GAATATAAGGGGCTTTGTTAGGTCATACATGAATTAAAAAGATATGTTTT
ATTTAAATGAATTTATAAGATGCTAAAATTAGTATttagttaatattttt
gtagaGTTTGTCTTTTGTTATACTGAATTTTAATAGGAATAGAAATCACT
TGTGAGAAGAAAGGCCTGAGACTTCactcttttgaaattttgttaaaatt
aaattttcttttgatgctAATAAAATTCAGTCCTGGTAAAACGGACTGAA
CAATGACTAAACAATATTGTTCAATGTTTCGAAAAGCATTTATTTATTAT
GTGTTTCTTTCCTTTATTAATGAAGCATTTATTACAGTCGataagatttt
ttaagaattattttagaatttttaaattatcGAAATAAACTTGTGTTATT
TTATTATTCtagttttgttttatttctttgtttactgatttgattttttc
atttagaatGTCTTATTTTAGTCAAAACTTATATTCTGAAACCtactgta
aaaatataaatgaattGTTACTTTTCATGCACCACAGAATgataatgaac
aatgattaaaaatgatatttaactttaatagaacaataaataaatatgga
caaaagtgatatTATTGTTGGTGTTTGTCATGGTGAATTTGGATCAAATA
TATTTCAAAGTCGTCATTCGGTATGATGTTACCCTCGAGAGAAACGTATG
AATAATACCTTGTCAATTATAAATCATGTTTTGGATATTGAATTGCATTA
TAATCcttTACACTTGGATGCACATTCATTTGTCACGAAAACTCCGCAAA
GTCGAATACATGTTACACGTTTATCAATCTTCGCGAATCGTTATTCATTC
TTCATGATAAACATGCTGCATaaagttaaaaacaaatatcttgaTCTTGA
TCAAAATGTTGGGAAAAATGCTTGTCATACTGCTTTACCTTTCTCCCGAT
AACAATGTATCCTGTATCCTGTTAACGATATATTCTGTATCCTGATTATG
ATGTATCCTATTTATGCTGTACCCTGTTTACACTATATCCCGCTAACGTT
GTATGCTATTTACGTTTTATCATGTTTACGTTCTAT Run BLAST on NCBI transcript from alignment at sc0000513:228719..230503+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024916 ID=TCONS_00024916|Name=TCONS_00024916|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at sc0000513:228719..230503+ (Clytia hemisphaerica)
GACTCCTTTTAACGcagtaggcttttaaatggCACAAGTTTGGGTATCTT
CAAGAGTTTCAAGCTAGGACTTAAAAATACAGTCACTGACAACTTAGATA
TTTCAGTAGCTGCAAACTTATGCCATATAAAATCCTATCTAAACTTTCAT
CCTTAGGCACAAACCTCAAAGATTAAGGCAGTTTATTTTTGTATAATGAA
TGAAAGTGACATATAATGGTCATTTTGATCATTCATATCAAAATAAAGAG
TTCTTTTATTACCATACAGTGAAATCTATGTTTAAATATTCTCAACTAAA
GGCTTCTCGCTTGTCTTATTTAGCTGCttaaattttgagatattttccaA
GAATATAAGGGGCTTTGTTAGGTCATACATGAATTAAAAAGATATGTTTT
ATTTAAATGAATTTATAAGATGCTAAAATTAGTATttagttaatattttt
gtagaGTTTGTCTTTTGTTATACTGAATTTTAATAGGAATAGAAATCACT
TGTGAGAAGAAAGGCCTGAGACTTCactcttttgaaattttgttaaaatt
aaattttcttttgatgctAATAAAATTCAGTCCTGGTAAAACGGACTGAA
CAATGACTAAACAATATTGTTCAATGTTTCGAAAAGCATTTATTTATTAT
GTGTTTCTTTCCTTTATTAATGAAGCATTTATTACAGTCGataagatttt
ttaagaattattttagaatttttaaattatcGAAATAAACTTGTGTTATT
TTATTATTCtagttttgttttatttctttgtttactgatttgattttttc
atttagaatGTCTTATTTTAGTCAAAACTTATATTCTGAAACCtactgta
aaaatataaatgaattGTTACTTTTCATGCACCACAGAATgataatgaac
aatgattaaaaatgatatttaactttaatagaacaataaataaatatgga
caaaagtgatatTATTGTTGGTGTTTGTCATGGTGAATTTGGATCAAATA
TATTTCAAAGTCGTCATTCGGTATGATGTTACCCTCGAGAGAAACGTATG
AATAATACCTTGTCAATTATAAATCATGTTTTGGATATTGAATTGCATTA
TAATCGTAAGTATAACAAAGTTTAACTATTCAATTTCTAGTCATCTTTTT
TCACTATGAAGAAAAGGGAaaaatggttttgaaaatttcatacgGGAATA
AGGTTCCTTATTGTTCCGAACATACATCTTGAAATTTCTGTCTGCCACTT
TTGATAATTATATAAATTAAATCTTAGTTTAGTTGGGAAAGTAATCGCCC
GCCAAGCGAGAGGTCGTAAGTTCAatccccactcgattcgttacctttga
gagaattgggaagtacattagtgcggAATCTATCGACTCTTATAAacgtt
tattttcttttatcaaaaatcctcTAATttcatcgttttttttttcattt
taagcttTACACTTGGATGCACATTCATTTGTCACGAAAACTCCGCAAAG
TCGAATACATGTTACACGTTTATCAATCTTCGCGAATCGTTATTCATTCT
TCATGATAAACATGCTGCATaaagttaaaaacaaatatcttgaTCTTGAT
CAAAATGTTGGGAAAAATGCTTGTCATACTGCTTTACCTTTCTCCCGATA
ACAATGTATCCTGTATCCTGTTAACGATATATTCTGTATCCTGATTATGA
TGTATCCTATTTATGCTGTACCCTGTTTACACTATATCCCGCTAACGTTG
TATGCTATTTACGTTTTATCATGTTTACGTTCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024916-exon-sc0000513-1491911889:228719..229823 | TCONS_00024916-exon-sc0000513-1491911889:228719..229823 | Clytia hemisphaerica | exon |
| TCONS_00024916-exon-sc0000513-1510915933:228719..229823 | TCONS_00024916-exon-sc0000513-1510915933:228719..229823 | Clytia hemisphaerica | exon |
| TCONS_00024916-exon-sc0000513-1575043694:228719..229823 | TCONS_00024916-exon-sc0000513-1575043694:228719..229823 | Clytia hemisphaerica | exon |
| TCONS_00024916-exon-sc0000513-1491911889:230173..230503 | TCONS_00024916-exon-sc0000513-1491911889:230173..230503 | Clytia hemisphaerica | exon |
| TCONS_00024916-exon-sc0000513-1510915933:230173..230503 | TCONS_00024916-exon-sc0000513-1510915933:230173..230503 | Clytia hemisphaerica | exon |
| TCONS_00024916-exon-sc0000513-1575043694:230173..230503 | TCONS_00024916-exon-sc0000513-1575043694:230173..230503 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000513 | supercontig | sc0000513:228719..230503 + |
Blast
The following BLAST results are available for this feature:
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