TCONS_00024917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024917
Unique NameTCONS_00024917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1376

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024917 ID=TCONS_00024917|Name=TCONS_00024917|organism=Clytia hemisphaerica|type=transcript|length=1376bp
GACCTGAACACAAAATAAACACAAGCACAAGATGACGAATTCAGAGATGC
AGACATTCACCACAAGTCTACCATTAAGTACATCTAAAACAAGTATCATA
AACCATACATCCGATGAATATGATACTTTGAATCACCATCAAAACAATCG
TTCACTTTCCGTCGAATCTGGCATCGGTCTTACCAATGAAGCTTATGAAG
TCTTCGAATCTGAAGGAAACAGAGGAGATTATCAAATCAGTGGAGCATAT
ACAGCATTGGATGTCCATCAACCACCAACACCGATCAACCAAGATACCAG
ATATGAGGACTTGCAACGATACGAGAAAATGACCAGAGATGGCGGTCATT
CAGGTGTTAGTCAACCATCAAAGGAACATCAGATTTATTCTCTACCGGAG
TTTCAACAACAGACTTCTGATATCAAACATAAAGATCGTTTATATTCGCT
ACCGGAACATAATACTGACTCTAATAACGAAATGTCGACAAACCAAAGAC
ATCAACATTCACGAACTTTGCCAATCGGTGGTCATAAAAAAGCAAACGTA
TTGTATGAGTCCAATAGAAGTGGCAGTTTAGATCAGAATAGCCATAGGCA
GAGCCCTATACCATCCAGCGTTGGCGGGAGCAAGAAAAAGAACATTCTAT
ATGAATCAACAACAATGACTGAAACGAACCATAGAATCGATCGTGGTTTG
AATAAAATCTCAATCACTAAACAAAATTCGACAAGCACACGAACAATATG
TAAGAATCGGAACACGGTATGTGGTATACCAACCAAACAATGTTTTATGG
TGTTGAATGTCATATTTGGTGTTTGTGCAATCGTAGCATTGATTATTGGT
ATTTTTCTGGTAATCCACCAACAAGATGGACACGAGCAAAGCAATGTGAG
CAATAGCAATAGCCAGCAAAATAAAGggTCATCAGGCACAACATCTGGTC
CTGACAATACACAGTTGAATCAAATGCTTAACTCGTTAAAGGACATTACG
TCACATCTCAAAAAGTTGGATCGGACGATATCAACAGTCAACAATACAGT
CGGTTCTCTTGCCAACAAGGTAAGGAGCTCTTTATGATGGACCTATCTTT
TAGTTCAATAGGGGGAAGTGGTTCTAACAGCAAAGAAGGTTCCAAAACGA
GAAGACAATTTCATGCAAAAACTTGTCAAAATTTAACATCCGCTGGCTTC
TTATATTTTATAAACATATACATAATGTTAGCTCTTACAACCCAGGGACT
GAAAAGCATTTAAAGCCCTGAAGGGGCTAAAGACaaaactcttggatggg
aaaagAAGCCACTGATTTTCGtacaaacaaatgaaaaaacgccggattga
aagtaaaatatatcgccagatttcga
Run BLAST on NCBI

protein sequence of TCONS_00024917-protein

>TCONS_00024917-protein ID=TCONS_00024917-protein|Name=TCONS_00024917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=351bp
MTNSEMQTFTTSLPLSTSKTSIINHTSDEYDTLNHHQNNRSLSVESGIGL
TNEAYEVFESEGNRGDYQISGAYTALDVHQPPTPINQDTRYEDLQRYEKM
TRDGGHSGVSQPSKEHQIYSLPEFQQQTSDIKHKDRLYSLPEHNTDSNNE
MSTNQRHQHSRTLPIGGHKKANVLYESNRSGSLDQNSHRQSPIPSSVGGS
KKKNILYESTTMTETNHRIDRGLNKISITKQNSTSTRTICKNRNTVCGIP
TKQCFMVLNVIFGVCAIVALIIGIFLVIHQQDGHEQSNVSNSNSQQNKGS
SGTTSGPDNTQLNQMLNSLKDITSHLKKLDRTISTVNNTVGSLANKVRSS
L
Run BLAST on NCBI

transcript from alignment at sc0000513:111..3805-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024917 ID=TCONS_00024917|Name=TCONS_00024917|organism=Clytia hemisphaerica|type=transcript|length=3695bp|location=Sequence derived from alignment at sc0000513:111..3805- (Clytia hemisphaerica)
GACCTGAACACAAAATAAACACAAGCACAAGATGACGAATTCAGAGATGC
AGACATTCACCACAAGTCTACCATTAAGTACATCTAAAACAAGTATCATA
AACCATACATCCGATGAATATGATACTTTGAATCACCATCAAAACAATCG
TTCACTTTCCGTCGAATCTGGCATCGGTCTTACCAATGAAGCTTATGAAG
TCTTCGAATCTGAAGGAAACAGAGGAGATTATCAAATCAGTGGAGCATAT
ACAGCATTGGATGTCCATCAACCACCAACACCGATCAACCAAGATACCAG
ATATGAGGACTTGCAACGATACGAGAAAATGACCAGAGATGGCGGTCATT
CAGGTGTTAGTCAACCATCAAAGGAACATCAGATTTATTCTCTACCGGAG
TTTCAACAACAGACTTCTGATATCAAACATAAAGATCGTTTATATTCGCT
ACCGGAACATAATACTGACTCTAATAACGAAATGTCGACAAACCAAAGAC
ATCAACATTCACGAACTTTGCCAATCGGTGGTCATAAAAAAGCAAACGTA
TTGTATGAGTCCAATAGAAGTGGCAGTTTAGATCAGAATAGCCATAGGCA
GAGCCCTATACCATCCAGCGTTGGCGGGAGCAAGAAAAAGAACATTCTAT
ATGAATCAACAACAATGACTGAAACGAACCATAGAATCGATCGTGGTTTG
AATAAAATCTCAATCACTAAACAAAATTCGACAAGCACACGAACAATATG
TAAGAATCGGAACACGGTATGTGGTATACCAACCAAACAATGTTTTATGG
TGTTGAATGTCATATTTGGTGTTTGTGCAATCGTAGCATTGATTATTGGT
ATTTTTCTGGTAATCCACCAACAAGATGGACACGAGCAAAGCAATGTGAG
CAATAGCAATAGCCAGCAAAATAAAGGTAAGGGTTAAATATGAATTAAGC
TAGTTTATTTTGACTTTTACTGTAAAAACCGATTCAATCGACCTCGGGTG
AGGGTGACTGTGGCACAAAAGGAAAAAGAAATCGATGAGTGGCTCCATGT
TACCGAAAATGGCGTATCAGCTTCTAGACGATGCTATCGTCCGTTTAAAG
TAAATGCGAGAAAGAGTTAGGGTGTCAGGGCGGTTTACGGGGAAAAAGTG
GCGGTAGATTTTTGGAACAAAACAACATACACTGTAAACATCTCCGCCAC
TGCTTTCCACCCGAAATTATCACGCCTCTCCTAAACTATTCCCTTTTTTA
GTGATCTTGTGTAGACGATAGGATCGTCTAATCAGCTTCTAGCGCCAAGT
AACTTTTCATGGTCAATTTTTCAAGCGGATACGGTGTAAGATACGGGGGC
GTAAAATTGTTAGAAAATATCAGATAAGGTATACATCCCTCAATCTCCTA
TCACAAAAGGGACGTTAGTTGTCAATGTCAGTGTATGTCACAATTGAGTG
GATAATTGGGAAACAACCAAAAAGATCTTCTCCGAAAAATCAACAAGGCT
TAGTCAGTGTGAGTCGAATAGATCTTATGGGAGTTTTTGATTTTTCTAAA
AAAGCGATGCATTGTGGGATTGTTTCTGGGGTATTACAATAGATATCTCT
TAGGAATTCAGCGAGGGAATTCTATTGTAATACCCCCGAAACAATCCCAC
AATGCATCACTGTTTTAGAAAAATAAAAAACTCCGATAAGGTCTATCAGA
CCGTTGTTTCAAGGTGTTTGCTTTATACGAAACTTGCTTTGTAAAGTGAG
TTTTAAGCTTATTTCTCTTTCTCAACTTTTCATCTGAAACTTCTCGACTG
TCATACTATTCATGTTGTATTTTTGTTGACAATATGGTCAACTTTTTGTA
TGTTTGTGGTTTCTTGAAAATTTCCTCTATTTCTTTCCGTTTCCTGGGGT
AAATAAAGGGCATTTTCTCACGTCTTGATAAAGGAAAGTCCTTTAAGAAT
CATGTATTCGTTTCTTGGTATGAAATGTCCGAAAAGGCAGATATGCACGT
TCTGTTTTCAGCTAAAATGTGGAAATAGACAGTATAACAATGATTTCCTC
ATATTATCAACTTATGATTCAACTCTAAAGAATGAANCATAAGGTCTATT
AGACCGTTGTTTCAAGGTGTTTGCTTTATACGAAACTTGCTTTGTAAAGT
GAGTTTTAAGCTTATTTCTCTTTCTCAACTTTTCATCTGAAACTTCTCGA
CTGTCATACTATTCATGTTGTATTTTTGTTGACAATATGGTCAACTTTTT
GTATGTTTGTGGTTTCTTGAAAATTTCCTCTATTTCTTTCCGTTTCCTGG
GGTAAATAAAGGGCATTTTCTCACGTCTTGATAAAGGAAAGTCCTTTAAG
AATCATGTATTCGTTTCTTGGTATGAAATGTCCGAAAAGGCAGATATGCA
CGTTCTGTTTTCAGCTAAAATGTGGAAATAGACAGTATAACAATGATTTC
CTCATATTATCAACTTATGATTCAACTCTAAAGAATGAAATACGACAATC
TGTTTTCGAATGCTCAAAATTTGTGTAAAATTTTAGATTAGACAGTTAGC
AAATACAAATAAAATTTAAAAATTCAAAACTACTATGTATCATTCTTTTG
TTTTAGGGTCATCAGGCACAACATCTGGTCCTGACAATACACAGTTGAAT
CAAATGCTTAACTCGTTAAAGGACATTACGTCACATCTCAAAAAGGTATG
TAGATAATAAACAACACAGTAAACAAGTAAACAAAATCTGTTACCAAACA
AGACTGGATAGCTAAAACAAATGAAGTATTTTTTCTCGGCTTTTACAAGT
TGGAACGTGCAGTAGGAAGCACTTCAAATCAATCCAAACAAGAAAATATT
TCCCTGACATTTCACCAACAGTCTACATATCTCGTGATGATATCTGTTTA
TCCTGAGGCAAAAATTCAATCTTCAAGAACGTCGTTTAATTTCTCCTACC
GTATGTGCAGCATTTTAACAAAAGAAATAACCGCGTCTTCCACATGGCTC
TATTTTTCGTGTAACTTTAAGCGGTCTGCGAAAGTCAAAATAAACCCAGA
GGTTGTCCATCATTTCAGTTTTATCTTTGTCGACCTTGTGACCCTCCAGC
TTAACCAATTTATCGTNCTGCGAAAGTCAAAATAAACCCAGAGGTTGTCC
ATCATTTCAGTTTTATCTTTGTCGACCTTGTGACCCTCCAGCTTAACCAA
TTTATCGTCTGACGTTGCAAAGATAGACGCACAAAACTTTGAGGAATACT
ATTTTTAATTTTGCTTTGTCAGTAAAGTCAGAGTAAACTTGCGTCCCCCG
TGCGTGTTTAAAATTAGCTTGTCTTTCTTTCCAGTTGGATCGGACGATAT
CAACAGTCAACAATACAGTCGGTTCTCTTGCCAACAAGGTAAGGAGCTCT
TTATGATGGACCTATCTTTTAGTTCAATAGGGGGAAGTGGTTCTAACAGC
AAAGAAGGTTCCAAAACGAGAAGACAATTTCATGCAAAAACTTGTCAAAA
TTTAACATCCGCTGGCTTCTTATATTTTATAAACATATACATAATGTTAG
CTCTTACAACCCAGGGACTGAAAAGCATTTAAAGCCCTGAAGGGGCTAAA
GACAAAACTCTTGGATGGGAAAAGAAGCCACTGATTTTCGTACAAACAAA
TGAAAAAACGCCGGATTGAAAGTAAAATATATCGCCAGATTTCGA

Coding sequence (CDS) from alignment at sc0000513:111..3805-

>TCONS_00024917 ID=TCONS_00024917|Name=TCONS_00024917|organism=Clytia hemisphaerica|type=CDS|length=3168bp|location=Sequence derived from alignment at sc0000513:111..3805- (Clytia hemisphaerica)
TTGGATCGGACGATATCAACAGTCAACAATACAGTCGGTTCTCTTGCCAA
CAAGGTAAGGAGCTCTTTATGAGGTCATCAGGCACAACATCTGGTCCTGA
CAATACACAGTTGAATCAAATGCTTAACTCGTTAAAGGACATTACGTCAC
ATCTCAAAAAGATGACGAATTCAGAGATGCAGACATTCACCACAAGTCTA
CCATTAAGTACATCTAAAACAAGTATCATAAACCATACATCCGATGAATA
TGATACTTTGAATCACCATCAAAACAATCGTTCACTTTCCGTCGAATCTG
GCATCGGTCTTACCAATGAAGCTTATGAAGTCTTCGAATCTGAAGGAAAC
AGAGGAGATTATCAAATCAGTGGAGCATATACAGCATTGGATGTCCATCA
ACCACCAACACCGATCAACCAAGATACCAGATATGAGGACTTGCAACGAT
ACGAGAAAATGACCAGAGATGGCGGTCATTCAGGTGTTAGTCAACCATCA
AAGGAACATCAGATTTATTCTCTACCGGAGTTTCAACAACAGACTTCTGA
TATCAAACATAAAGATCGTTTATATTCGCTACCGGAACATAATACTGACT
CTAATAACGAAATGTCGACAAACCAAAGACATCAACATTCACGAACTTTG
CCAATCGGTGGTCATAAAAAAGCAAACGTATTGTATGAGTCCAATAGAAG
TGGCAGTTTAGATCAGAATAGCCATAGGCAGAGCCCTATACCATCCAGCG
TTGGCGGGAGCAAGAAAAAGAACATTCTATATGAATCAACAACAATGACT
GAAACGAACCATAGAATCGATCGTGGTTTGAATAAAATCTCAATCACTAA
ACAAAATTCGACAAGCACACGAACAATATGTAAGAATCGGAACACGGTAT
GTGGTATACCAACCAAACAATGTTTTATGGTGTTGAATGTCATATTTGGT
GTTTGTGCAATCGTAGCATTGATTATTGGTATTTTTCTGGTAATCCACCA
ACAAGATGGACACGAGCAAAGCAATGTGAGCAATAGCAATAGCCAGCAAA
ATAAAGTTGGATCGGACGATATCAACAGTCAACAATACAGTCGGTTCTCT
TGCCAACAAGGTAAGGAGCTCTTTATGAGGTCATCAGGCACAACATCTGG
TCCTGACAATACACAGTTGAATCAAATGCTTAACTCGTTAAAGGACATTA
CGTCACATCTCAAAAAGATGACGAATTCAGAGATGCAGACATTCACCACA
AGTCTACCATTAAGTACATCTAAAACAAGTATCATAAACCATACATCCGA
TGAATATGATACTTTGAATCACCATCAAAACAATCGTTCACTTTCCGTCG
AATCTGGCATCGGTCTTACCAATGAAGCTTATGAAGTCTTCGAATCTGAA
GGAAACAGAGGAGATTATCAAATCAGTGGAGCATATACAGCATTGGATGT
CCATCAACCACCAACACCGATCAACCAAGATACCAGATATGAGGACTTGC
AACGATACGAGAAAATGACCAGAGATGGCGGTCATTCAGGTGTTAGTCAA
CCATCAAAGGAACATCAGATTTATTCTCTACCGGAGTTTCAACAACAGAC
TTCTGATATCAAACATAAAGATCGTTTATATTCGCTACCGGAACATAATA
CTGACTCTAATAACGAAATGTCGACAAACCAAAGACATCAACATTCACGA
ACTTTGCCAATCGGTGGTCATAAAAAAGCAAACGTATTGTATGAGTCCAA
TAGAAGTGGCAGTTTAGATCAGAATAGCCATAGGCAGAGCCCTATACCAT
CCAGCGTTGGCGGGAGCAAGAAAAAGAACATTCTATATGAATCAACAACA
ATGACTGAAACGAACCATAGAATCGATCGTGGTTTGAATAAAATCTCAAT
CACTAAACAAAATTCGACAAGCACACGAACAATATGTAAGAATCGGAACA
CGGTATGTGGTATACCAACCAAACAATGTTTTATGGTGTTGAATGTCATA
TTTGGTGTTTGTGCAATCGTAGCATTGATTATTGGTATTTTTCTGGTAAT
CCACCAACAAGATGGACACGAGCAAAGCAATGTGAGCAATAGCAATAGCC
AGCAAAATAAAGTTGGATCGGACGATATCAACAGTCAACAATACAGTCGG
TTCTCTTGCCAACAAGGTAAGGAGCTCTTTATGAGGTCATCAGGCACAAC
ATCTGGTCCTGACAATACACAGTTGAATCAAATGCTTAACTCGTTAAAGG
ACATTACGTCACATCTCAAAAAGATGACGAATTCAGAGATGCAGACATTC
ACCACAAGTCTACCATTAAGTACATCTAAAACAAGTATCATAAACCATAC
ATCCGATGAATATGATACTTTGAATCACCATCAAAACAATCGTTCACTTT
CCGTCGAATCTGGCATCGGTCTTACCAATGAAGCTTATGAAGTCTTCGAA
TCTGAAGGAAACAGAGGAGATTATCAAATCAGTGGAGCATATACAGCATT
GGATGTCCATCAACCACCAACACCGATCAACCAAGATACCAGATATGAGG
ACTTGCAACGATACGAGAAAATGACCAGAGATGGCGGTCATTCAGGTGTT
AGTCAACCATCAAAGGAACATCAGATTTATTCTCTACCGGAGTTTCAACA
ACAGACTTCTGATATCAAACATAAAGATCGTTTATATTCGCTACCGGAAC
ATAATACTGACTCTAATAACGAAATGTCGACAAACCAAAGACATCAACAT
TCACGAACTTTGCCAATCGGTGGTCATAAAAAAGCAAACGTATTGTATGA
GTCCAATAGAAGTGGCAGTTTAGATCAGAATAGCCATAGGCAGAGCCCTA
TACCATCCAGCGTTGGCGGGAGCAAGAAAAAGAACATTCTATATGAATCA
ACAACAATGACTGAAACGAACCATAGAATCGATCGTGGTTTGAATAAAAT
CTCAATCACTAAACAAAATTCGACAAGCACACGAACAATATGTAAGAATC
GGAACACGGTATGTGGTATACCAACCAAACAATGTTTTATGGTGTTGAAT
GTCATATTTGGTGTTTGTGCAATCGTAGCATTGATTATTGGTATTTTTCT
GGTAATCCACCAACAAGATGGACACGAGCAAAGCAATGTGAGCAATAGCA
ATAGCCAGCAAAATAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014006XLOC_014006Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024917-proteinTCONS_00024917-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024917-exon-sc0000513-1575043694:2880..3805TCONS_00024917-exon-sc0000513-1575043694:2880..3805Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1575043694:1111..1199TCONS_00024917-exon-sc0000513-1575043694:1111..1199Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1575043694:111..471TCONS_00024917-exon-sc0000513-1575043694:111..471Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1510915933:2880..3805TCONS_00024917-exon-sc0000513-1510915933:2880..3805Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1510915933:1111..1199TCONS_00024917-exon-sc0000513-1510915933:1111..1199Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1510915933:111..471TCONS_00024917-exon-sc0000513-1510915933:111..471Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1491911889:2880..3805TCONS_00024917-exon-sc0000513-1491911889:2880..3805Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1491911889:1111..1199TCONS_00024917-exon-sc0000513-1491911889:1111..1199Clytia hemisphaericaexon
TCONS_00024917-exon-sc0000513-1491911889:111..471TCONS_00024917-exon-sc0000513-1491911889:111..471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000513supercontigsc0000513:111..3805 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0344214	0.0336759	0.778947	0.453551	3.24406	3.87864	4.58565	6.34645	8.77803	3.84689	3.76066	4.24144	9.77062	8.79956	5.04361	5.75433	6.62493	5.7151	1.76359	1.76345	0.836567	1.10915	1.17504	5.12695	0.166742	0.0889759	0.371168	0.309405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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