TCONS_00024888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024888
Unique NameTCONS_00024888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024888 ID=TCONS_00024888|Name=TCONS_00024888|organism=Clytia hemisphaerica|type=transcript|length=1521bp
CGATTACTAGCGAGAAAGGACCGGTACATCGCTCTGTGGGACGATATATC
TCATTACTTAGACTATAATTTTTTGATgttatatttttgctttttatttg
aAGTATAAAAAACACAGTTGGAAAATTAATCAGAAtttaaacagttgttt
tgctTTTCTGCTGGTTATTTTTTTGGAGAAAGAAGATGTCGCACGCGCCG
TTGTCACAGAAAAAGAGTTACACTACGGCTCAACCAATCACACCTCAAGA
CATGAACGAATTGAAGAGTGCGTTTGCTTCATTCGATAAAAATGACGATg
ggtttatttcgaaagaagaACTTTCTGAAGCCATGGCTTGTTTGGGTCAC
AAAATCTCCAATGAAGAATTAGATGACATCATTAAAGCTGTTGACATCGA
TGGTAATGGTTTGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATA
ATTGTCTGGTACAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATG
ATCGATAAGAACAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCAT
GTTGAAAGGAATGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGA
TCAAAGAAGCTGACCAAAATAAagatggaaagatcagtttcaaTGAATTC
AAGACTATGGTTCAAAATGGTAACTACCTGATATGAGAAGGGGTGCACGC
CAAAACAACAAGCTATGGCGTATCGCGTCCTTGAGATATCACTATATCGT
TCGCCTGCCGTGACAAAAAAGATTACATGTAGAACGCGAACCGATTTGAC
TGGAGGACCACGAAAGTTTGCTGCTGTCAGAATCTATACTCAATGTCAAT
ATTTGTTGAAAATGCAAGATATTCGGGAGAGATATAATGAAATAAAGATG
GCAGCTTCTGATAAAAAGACGCATAATTAGAGAGATAAGGAACATTAAAA
GGACATGAGTCTCCTCACATGATAGAAATGAATCCACATATAGACATTCA
ATCAATTCAAATTGTATATAACTTGTAAATATGTTCTTGTATTTAGTAAA
ACAAATTGTATTGTCTAattttgttgacaaaaaaattCTACACATTGAAG
GTAGATTGAGCCTAAAGATtcttaaataattttttggcaGACTGACTTTT
GGTCAAAGGTCTTCTTGACCCTTCCTGGCACCTCAATTTCACCAAAATTC
TCATGTCCTCAATCCCAATACTTTTATTCAGGAATGCTGACTTTAATCCC
AAACGACACTTGTTAAATATACATTTTTATTCCCAAGCACTAGTCTTGGA
AGTTCGAACAGAAAAACAATACTTTGATGTCAGAAAAGAACAGTATTTGG
TGATTCGCTAAATCTAAGTCAATCAGGGCATGGCAGGCGTACCAAAAATA
CCTAAATATAGAAGAACACGGCATTAAATTCACTCACAAATTGTCGCAAG
ATTCCTCATTATAAAATGgagtgttaaaaaaatgctttcaactaGTTTAA
AGTTCAAGGATTTGGACTTAA
Run BLAST on NCBI

transcript from alignment at sc0000512:157329..161029-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024888 ID=TCONS_00024888|Name=TCONS_00024888|organism=Clytia hemisphaerica|type=transcript|length=3701bp|location=Sequence derived from alignment at sc0000512:157329..161029- (Clytia hemisphaerica)
CGATTACTAGCGAGAAAGGACCGGTACATCGCTCTGTGGGACGATATATC
TCATTACTTAGACTATAATTTTTTGATGTTATATTTTTGCTTTTTATTTG
AAGTATAAAAAACACAGTTGGAAAATTAATCAGAATTTAAACAGTTGTTT
TGCTTTTCTGCTGGTTATTTTTTTGGAGAAAGAAGATGTCGCACGCGCCG
TTGTCACAGAAAAAGAGTTACACTACGGTACAGACCCCTTGCTATTCGCC
AGACATTACTTTTCACCAGAGGGCCTGTTATTCTTTTCTGGAATAAAAAT
AACGAAGGGAACGGAAGAAAAACATTGCTATAACTGATACTTTTTTGGTA
GAGAAAAGAAAAACACCTTTCGTATATAATGATTTTTTTTTTGTTGAAAA
ATAACCTGAATCAAAACAAAAATGAGAGAAATCTTCTAATCTCCCTTCGT
TCGTCACTTTTTCTTCTTTTCATCGCTTATAATTTTTTCTTCTTCTTCTT
CTTCTCAAAAACAGGCTCAACCAATCACACCTCAAGACATGAACGGTAAG
CATTGATACAATATTTCACCGGAATTGAAAGCTAATCTAAACCCAAATAT
TGCAGGAGCAAAACTAAACACCCCTGTTTCGGGAGCTCGTCTAAGTGAAA
TTGGAGTCAAATCCCACTGGGCACTGAAATGAAATTTCTTGGGCACTGAT
ACAGGGGTTTATCAAAGGTACTGTTTCTGATATACAAAGAACACCTTTGG
CAATTATATCTCCCTCATTTTTCAATAGAATTGAAGAGTGCGTTTGCTTC
ATTCGATAAAAATGACGATGGGTTTATTTCGAAAGAAGAACTTTCTGAAG
CCATGGCTTGTTTGGGTCACAAAATCTCCAATGAAGAATTAGATGACATC
ATTAAAGCTGTTGACATCGATGGTAAGTGTGAACAAACCCTTATGTCAAA
AAAGAGCCTTGGATCAAAAACTATGAGCAGATGCCACCATATAAAGCAAT
AAAGTGCACCATTCTTTTTGTTATGTGATAGGAAATTTCTACCGATGTAA
TAACTTTGCCAGGAGAAACAGCTATACAATTTCATTAATTTGGCAGCTTA
TTGAAAAAGTAATGTTTAAGGATTTCCGTCAGGTAATGGTTTGTGTAACC
ATTTCCTTTGTAAGAAAATCTGAAGGAGAGAGAGGCTTAGTAAAAAATCT
ATTAATAAACGGAATGGTTCATTAATAGGATGAGATTAAGGAGATAATGA
GATCCAACCTTTCGTTAATCTTCTGTAGGTAATGGTTTGGTGGATTTCAA
AGAGTTCATTAATCTGATGGATAATAATTGTCTGGTACAAAGTATGGATG
AGGAGATGCAACATCTCTTCCAAATGATCGATAAGAACAATGATGGTTAC
ATTACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAATGGGAGAAAAAGT
CCGCAAGAAGGACATCAGGAAAATGATCAAAGAAGCTGACCAAAATAAAG
ATGGAAAGATCAGTTTCAATGGTAAATGCTTTACTCACTTTAGAAATTCC
ACAAAAATCCCTTGTGTTGTCCTTAATATCAAATTGAAAATAGCAATAAT
GGGGGGAAAAAAAAACGATTAGTATCGCAATGGTGTATGCAAGAAAGTTT
TGGTGTATGTAAAATATCTATTCCATCAATCTAATCAAACAAAACTTTTT
ATCTTGTTTAGAATTCAAGACTATGGTTCAAAATGGTAACTACCTGATAT
GAGAAGGGATGCACGCCAAAACAACAAGCTATGGCGTATCGCGTCCTNTT
TCTTGGGCACTGATACAGGGGTTTATCAAAGGTACTGTTTCTGATATACA
AAGAACACCTTTGGCAATTATATCTCCCTCATTTTTCAATAGAATTGAAG
AGTGCGTTTGCTTCATTCGATAAAAATGACGATGGGTTTATTTCGAAAGA
AGAACTTTCTGAAGCCATGGCTTGTTTGGGTCACAAAATCTCCAATGAAG
AATTAGATGACATCATTAAAGCTGTTGACATCGATGGTAAGTGTGAACAA
ACCCTTATGTCAAAAAAGAGCCTTGGATCAAAAACTATGAGCAGATGCCA
CCATATAAAGCAATAAAGTGCACCATTCTTTTTGTTATGTGATAGGAAAT
TTCTACCGATGTAATAACTTTGCCAGGAGAAACAGCTATACAATTTCATT
AATCTGGCAGCTTATTGAAAAAGTAATGTTTAAGGATTTCCGTCAGGTAA
TGGTTTGTGTAACCATTTCCTTTGTAAGAAAATCTGAAGGAGAGAGAGGC
TTAGTAAAAAATCTATTAATAAACAGAATGGTTCATTAATAGGATGAGAT
TAAGGAGATAATGAGATCCAACCTTTCGTTAATCTTCTGTAGGTAATGGT
TTGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATAATTGTCTGGT
ACAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATGATCGATAAGA
ACAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCATGTTGAAAGGA
ATGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGATCAAAGAAGC
TGACCAAAATAAAGATGGAAAGATCAGTTTCAATGGTAAATGCTTTACTC
ACTTTAGAAATTCCACAAAAATCCCTTGTGTTGTCCTTAATATCAAATTG
AAAATAGCAATAATGGGGGGAAAAAAAAACGATTAGTATCGCAATGGTGT
ATGCAAGAAAGTTTTGGTGTATGTAGAATATCTATTCCATCAATCTAATC
AAACAAAACTTTTTATCTTGTTTAGAATTCAAGACTATGGTTCAAAATGG
TAACTACCTGATATGAGAAGGGGTGCACGCCAAAACAACAAGCTATGGCG
TATCGCGTCCTTGAGATATCACTATATCGTTCGCCTGCCGTGACAAAAAA
GATTACATGTAGAACGCGAACCGATTTGACTGGAGGACCACGAAAGTTTG
CTGCTGTCAGAATCTATACTCAATGTCAATATTTGTTGAAAATGCAAGAT
ATTCGGGAGAGATATAATGAAATAAAGATGGCAGCTTCTGATAAAAAGAC
GCATAATTAGAGAGATAAGGAACATTAAAAGGACATGAGTCTCCTCACAT
GATAGAAATGAATCCACATATAGACATTCAATCAATTCAAATTGTATATA
ACTTGTAAATATGTTCTTGTATTTAGTAAAACAAATTGTATTGTCTAATT
TTGTTGACAAAAAAATTCTACACATTGAAGGTAGATTGAGCCTAAAGATT
CTTAAATAATTTTTTGGCAGACTGACTTTTGGTCAAAGGTCTTCTTGACC
CTTCCTGGCACCTCAATTTCACCAAAATTCTCATGTCCTCAATCCCAATA
CTTTTATTCAGGAATGCTGACTTTAATCCCAAACGACACTTGTTAAATAT
ACATTTTTATTCCCAAGCACTAGTCTTGGAAGTTCGAACAGAAAAACAAT
ACTTTGATGTCAGAAAAGAACAGTATTTGGTGATTCGCTAAATCTAAGTC
AATCAGGGCATGGCAGGCGTACCAAAAATACCTAAATATAGAAGAACACG
GCATTAAATTCACTCACAAATTGTCGCAAGATTCCTCATTATAAAATGGA
GTGTTAAAAAAATGCTTTCAACTAGTTTAAAGTTCAAGGATTTGGACTTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013987XLOC_013987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024888-exon-sc0000512-1575043694:160803..161029TCONS_00024888-exon-sc0000512-1575043694:160803..161029Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1575043694:160485..160515TCONS_00024888-exon-sc0000512-1575043694:160485..160515Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1575043694:160108..160251TCONS_00024888-exon-sc0000512-1575043694:160108..160251Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1575043694:158395..158637TCONS_00024888-exon-sc0000512-1575043694:158395..158637Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1575043694:157329..158204TCONS_00024888-exon-sc0000512-1575043694:157329..158204Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1510915933:160803..161029TCONS_00024888-exon-sc0000512-1510915933:160803..161029Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1510915933:160485..160515TCONS_00024888-exon-sc0000512-1510915933:160485..160515Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1510915933:160108..160251TCONS_00024888-exon-sc0000512-1510915933:160108..160251Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1510915933:158395..158637TCONS_00024888-exon-sc0000512-1510915933:158395..158637Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1510915933:157329..158204TCONS_00024888-exon-sc0000512-1510915933:157329..158204Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1491911889:160803..161029TCONS_00024888-exon-sc0000512-1491911889:160803..161029Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1491911889:160485..160515TCONS_00024888-exon-sc0000512-1491911889:160485..160515Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1491911889:160108..160251TCONS_00024888-exon-sc0000512-1491911889:160108..160251Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1491911889:158395..158637TCONS_00024888-exon-sc0000512-1491911889:158395..158637Clytia hemisphaericaexon
TCONS_00024888-exon-sc0000512-1491911889:157329..158204TCONS_00024888-exon-sc0000512-1491911889:157329..158204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:157329..161029 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.6779	11.4852	6.45321	5.64951	15.3914	10.8847	33.6603	36.4486	26.1639	37.0669	17.2765	19.9169	48.0962	49.2476	7.36578	12.9761	15.2239	20.5015	63.256	77.6173	48.3916	28.619	15.1464	14.9606	9.8012	12.0707	5.96125	1.59304e-09	5.22526	1.02455
Blast
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BLAST of TCONS_00024888 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.758e-28
Identity = 54/145 (37.24%), Postives = 91/145 (62.76%), Query Frame = 3 
Query:  228 AQPITPQDMNELKSAFASFDKNDDGFISKEELSEAMACLGHKISNEELDDIIKAVDIDGNGLVDFKEFINLMDNNCLVQSMDEEMQHLFQMIDKNNDGYITEKEIKAMLKGMGEKVRKKDIRKMIKEADQNKDGKISFNEFKTMV 662
            A  +T + + E K AF+ FDK+ DG I+ +EL   M  LG   +  EL D+I  VD DGNG +DF EF+ +M         +EE++  F++ DK+ +GYI+  E++ ++  +GEK+  +++ +MI+EAD + DG++++ EF  M+
Sbjct:    2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00024888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.758e-2837.24Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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