TCONS_00024887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024887
Unique NameTCONS_00024887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024887 ID=TCONS_00024887|Name=TCONS_00024887|organism=Clytia hemisphaerica|type=transcript|length=1415bp
AAAAAACACAGTTGGAAAATTAATCAGAAtttaaacagttgttttgctTT
TCTGCTGGTTATTTTTTTGGAGAAAGAAGATGTCGCACGCGCCGTTGTCA
CAGAAAAAGAGTTACACTACGGCTCAACCAATCACACCTCAAGACATGAA
CGAATTGAAGAGTGCGTTTGCTTCATTCGATAAAAATGACGATgggttta
tttcgaaagaagaACTTTCTGAAGCCATGGCTTGTTTGGGTCACAAAATC
TCCAATGAAGAATTAGATGACATCATTAAAGCTGTTGACATCGATGGTAA
TGGTTTGGTGGATTTCAAAGAGTTCATTAATCTGATGGATAATAATTGTC
TGGTACAAAGTATGGATGAGGAGATGCAACATCTCTTCCAAATGATCGAT
AAGAACAATGATGGTTACATTACCGAGAAAGAAATCAAAGCCATGTTGAA
AGGAATGGGAGAAAAAGTCCGCAAGAAGGACATCAGGAAAATGATCAAAG
AAGCTGACCAAAATAAagatggaaagatcagtttcaaTGAATTCAAGACT
ATGGTTCAAAATGGTAACTACCTGATATGAGAAGGGGTGCACGCCAAAAC
AACAAGCTATGGCGTATCGCGTCCTTGAGATATCACTATATCGTTCGCCT
GCCGTGACAAAAAAGATTACATGTAGAACGCGAACCGATTTGACTGGAGG
ACCACGAAAGTTTGCTGCTGTCAGAATCTATACTCAATGTCAATATTTGT
TGAAAATGCAAGATATTCGGGAGAGATATAATGAAATAAAGATGGCAGCT
TCTGATAAAAAGACGCATAATTAGAGAGATAAGGAACATTAAAAGGACAT
GAGTCTCCTCACATGATAGAAATGAATCCACATATAGACATTCAATCAAT
TCAAATTGTATATAACTTGTAAATATGTTCTTGTATTTAGTAAAACAAAT
TGTATTGTCTAattttgttgacaaaaaaattCTACACATTGAAGGTAGAT
TGAGCCTAAAGATtcttaaataattttttggcaGACTGACTTTTGGTCAA
AGGTCTTCTTGACCCTTCCTGGCACCTCAATTTCACCAAAATTCTCATGT
CCTCAATCCCAATACTTTTATTCAGGAATGCTGACTTTAATCCCAAACGA
CACTTGTTAAATATACATTTTTATTCCCAAGCACTAGTCTTGGAAGTTCG
AACAGAAAAACAATACTTTGATGTCAGAAAAGAACAGTATTTGGTGATTC
GCTAAATCTAAGTCAATCAGGGCATGGCAGGCGTACCAAAAATACCTAAA
TATAGAAGAACACGGCATTAAATTCACTCACAAATTGTCGCAAGATTCCT
CATTATAAAATGgagtgttaaaaaaatgctttcaactaGTTTAAAGTTCA
AGGATTTGGACTTAA
Run BLAST on NCBI

transcript from alignment at sc0000512:157329..160923-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024887 ID=TCONS_00024887|Name=TCONS_00024887|organism=Clytia hemisphaerica|type=transcript|length=3595bp|location=Sequence derived from alignment at sc0000512:157329..160923- (Clytia hemisphaerica)
AAAAAACACAGTTGGAAAATTAATCAGAATTTAAACAGTTGTTTTGCTTT
TCTGCTGGTTATTTTTTTGGAGAAAGAAGATGTCGCACGCGCCGTTGTCA
CAGAAAAAGAGTTACACTACGGTACAGACCCCTTGCTATTCGCCAGACAT
TACTTTTCACCAGAGGGCCTGTTATTCTTTTCTGGAATAAAAATAACGAA
GGGAACGGAAGAAAAACATTGCTATAACTGATACTTTTTTGGTAGAGAAA
AGAAAAACACCTTTCGTATATAATGATTTTTTTTTTGTTGAAAAATAACC
TGAATCAAAACAAAAATGAGAGAAATCTTCTAATCTCCCTTCGTTCGTCA
CTTTTTCTTCTTTTCATCGCTTATAATTTTTTCTTCTTCTTCTTCTTCTC
AAAAACAGGCTCAACCAATCACACCTCAAGACATGAACGGTAAGCATTGA
TACAATATTTCACCGGAATTGAAAGCTAATCTAAACCCAAATATTGCAGG
AGCAAAACTAAACACCCCTGTTTCGGGAGCTCGTCTAAGTGAAATTGGAG
TCAAATCCCACTGGGCACTGAAATGAAATTTCTTGGGCACTGATACAGGG
GTTTATCAAAGGTACTGTTTCTGATATACAAAGAACACCTTTGGCAATTA
TATCTCCCTCATTTTTCAATAGAATTGAAGAGTGCGTTTGCTTCATTCGA
TAAAAATGACGATGGGTTTATTTCGAAAGAAGAACTTTCTGAAGCCATGG
CTTGTTTGGGTCACAAAATCTCCAATGAAGAATTAGATGACATCATTAAA
GCTGTTGACATCGATGGTAAGTGTGAACAAACCCTTATGTCAAAAAAGAG
CCTTGGATCAAAAACTATGAGCAGATGCCACCATATAAAGCAATAAAGTG
CACCATTCTTTTTGTTATGTGATAGGAAATTTCTACCGATGTAATAACTT
TGCCAGGAGAAACAGCTATACAATTTCATTAATTTGGCAGCTTATTGAAA
AAGTAATGTTTAAGGATTTCCGTCAGGTAATGGTTTGTGTAACCATTTCC
TTTGTAAGAAAATCTGAAGGAGAGAGAGGCTTAGTAAAAAATCTATTAAT
AAACGGAATGGTTCATTAATAGGATGAGATTAAGGAGATAATGAGATCCA
ACCTTTCGTTAATCTTCTGTAGGTAATGGTTTGGTGGATTTCAAAGAGTT
CATTAATCTGATGGATAATAATTGTCTGGTACAAAGTATGGATGAGGAGA
TGCAACATCTCTTCCAAATGATCGATAAGAACAATGATGGTTACATTACC
GAGAAAGAAATCAAAGCCATGTTGAAAGGAATGGGAGAAAAAGTCCGCAA
GAAGGACATCAGGAAAATGATCAAAGAAGCTGACCAAAATAAAGATGGAA
AGATCAGTTTCAATGGTAAATGCTTTACTCACTTTAGAAATTCCACAAAA
ATCCCTTGTGTTGTCCTTAATATCAAATTGAAAATAGCAATAATGGGGGG
AAAAAAAAACGATTAGTATCGCAATGGTGTATGCAAGAAAGTTTTGGTGT
ATGTAAAATATCTATTCCATCAATCTAATCAAACAAAACTTTTTATCTTG
TTTAGAATTCAAGACTATGGTTCAAAATGGTAACTACCTGATATGAGAAG
GGATGCACGCCAAAACAACAAGCTATGGCGTATCGCGTCCTNTTTCTTGG
GCACTGATACAGGGGTTTATCAAAGGTACTGTTTCTGATATACAAAGAAC
ACCTTTGGCAATTATATCTCCCTCATTTTTCAATAGAATTGAAGAGTGCG
TTTGCTTCATTCGATAAAAATGACGATGGGTTTATTTCGAAAGAAGAACT
TTCTGAAGCCATGGCTTGTTTGGGTCACAAAATCTCCAATGAAGAATTAG
ATGACATCATTAAAGCTGTTGACATCGATGGTAAGTGTGAACAAACCCTT
ATGTCAAAAAAGAGCCTTGGATCAAAAACTATGAGCAGATGCCACCATAT
AAAGCAATAAAGTGCACCATTCTTTTTGTTATGTGATAGGAAATTTCTAC
CGATGTAATAACTTTGCCAGGAGAAACAGCTATACAATTTCATTAATCTG
GCAGCTTATTGAAAAAGTAATGTTTAAGGATTTCCGTCAGGTAATGGTTT
GTGTAACCATTTCCTTTGTAAGAAAATCTGAAGGAGAGAGAGGCTTAGTA
AAAAATCTATTAATAAACAGAATGGTTCATTAATAGGATGAGATTAAGGA
GATAATGAGATCCAACCTTTCGTTAATCTTCTGTAGGTAATGGTTTGGTG
GATTTCAAAGAGTTCATTAATCTGATGGATAATAATTGTCTGGTACAAAG
TATGGATGAGGAGATGCAACATCTCTTCCAAATGATCGATAAGAACAATG
ATGGTTACATTACCGAGAAAGAAATCAAAGCCATGTTGAAAGGAATGGGA
GAAAAAGTCCGCAAGAAGGACATCAGGAAAATGATCAAAGAAGCTGACCA
AAATAAAGATGGAAAGATCAGTTTCAATGGTAAATGCTTTACTCACTTTA
GAAATTCCACAAAAATCCCTTGTGTTGTCCTTAATATCAAATTGAAAATA
GCAATAATGGGGGGAAAAAAAAACGATTAGTATCGCAATGGTGTATGCAA
GAAAGTTTTGGTGTATGTAGAATATCTATTCCATCAATCTAATCAAACAA
AACTTTTTATCTTGTTTAGAATTCAAGACTATGGTTCAAAATGGTAACTA
CCTGATATGAGAAGGGGTGCACGCCAAAACAACAAGCTATGGCGTATCGC
GTCCTTGAGATATCACTATATCGTTCGCCTGCCGTGACAAAAAAGATTAC
ATGTAGAACGCGAACCGATTTGACTGGAGGACCACGAAAGTTTGCTGCTG
TCAGAATCTATACTCAATGTCAATATTTGTTGAAAATGCAAGATATTCGG
GAGAGATATAATGAAATAAAGATGGCAGCTTCTGATAAAAAGACGCATAA
TTAGAGAGATAAGGAACATTAAAAGGACATGAGTCTCCTCACATGATAGA
AATGAATCCACATATAGACATTCAATCAATTCAAATTGTATATAACTTGT
AAATATGTTCTTGTATTTAGTAAAACAAATTGTATTGTCTAATTTTGTTG
ACAAAAAAATTCTACACATTGAAGGTAGATTGAGCCTAAAGATTCTTAAA
TAATTTTTTGGCAGACTGACTTTTGGTCAAAGGTCTTCTTGACCCTTCCT
GGCACCTCAATTTCACCAAAATTCTCATGTCCTCAATCCCAATACTTTTA
TTCAGGAATGCTGACTTTAATCCCAAACGACACTTGTTAAATATACATTT
TTATTCCCAAGCACTAGTCTTGGAAGTTCGAACAGAAAAACAATACTTTG
ATGTCAGAAAAGAACAGTATTTGGTGATTCGCTAAATCTAAGTCAATCAG
GGCATGGCAGGCGTACCAAAAATACCTAAATATAGAAGAACACGGCATTA
AATTCACTCACAAATTGTCGCAAGATTCCTCATTATAAAATGGAGTGTTA
AAAAAATGCTTTCAACTAGTTTAAAGTTCAAGGATTTGGACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013987XLOC_013987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024887-exon-sc0000512-1575043694:160803..160923TCONS_00024887-exon-sc0000512-1575043694:160803..160923Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1575043694:160485..160515TCONS_00024887-exon-sc0000512-1575043694:160485..160515Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1575043694:160108..160251TCONS_00024887-exon-sc0000512-1575043694:160108..160251Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1575043694:159567..159751TCONS_00024887-exon-sc0000512-1575043694:159567..159751Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1575043694:158395..158452TCONS_00024887-exon-sc0000512-1575043694:158395..158452Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1575043694:157329..158204TCONS_00024887-exon-sc0000512-1575043694:157329..158204Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1510915933:160803..160923TCONS_00024887-exon-sc0000512-1510915933:160803..160923Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1510915933:160485..160515TCONS_00024887-exon-sc0000512-1510915933:160485..160515Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1510915933:160108..160251TCONS_00024887-exon-sc0000512-1510915933:160108..160251Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1510915933:159567..159751TCONS_00024887-exon-sc0000512-1510915933:159567..159751Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1510915933:158395..158452TCONS_00024887-exon-sc0000512-1510915933:158395..158452Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1510915933:157329..158204TCONS_00024887-exon-sc0000512-1510915933:157329..158204Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1491911889:160803..160923TCONS_00024887-exon-sc0000512-1491911889:160803..160923Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1491911889:160485..160515TCONS_00024887-exon-sc0000512-1491911889:160485..160515Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1491911889:160108..160251TCONS_00024887-exon-sc0000512-1491911889:160108..160251Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1491911889:159567..159751TCONS_00024887-exon-sc0000512-1491911889:159567..159751Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1491911889:158395..158452TCONS_00024887-exon-sc0000512-1491911889:158395..158452Clytia hemisphaericaexon
TCONS_00024887-exon-sc0000512-1491911889:157329..158204TCONS_00024887-exon-sc0000512-1491911889:157329..158204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:157329..160923 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0057	0.0122606	0	1.36824	0	0	0.0372705	0	2.01992	0.0970642	2.72012e-09	6.52791e-07	0.0557718	0	0.0202505	0.000310309	0.00794991	0.173522	8.59301	0.00949116	0.115098	0.000605454	1.78138e-06	2.14951e-09	0	3.13228e-09	0	0	9.94176e-10	0.747175
Blast
[Close]
BLAST of TCONS_00024887 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.177e-28
Identity = 54/145 (37.24%), Postives = 91/145 (62.76%), Query Frame = 2 
Query:  122 AQPITPQDMNELKSAFASFDKNDDGFISKEELSEAMACLGHKISNEELDDIIKAVDIDGNGLVDFKEFINLMDNNCLVQSMDEEMQHLFQMIDKNNDGYITEKEIKAMLKGMGEKVRKKDIRKMIKEADQNKDGKISFNEFKTMV 556
            A  +T + + E K AF+ FDK+ DG I+ +EL   M  LG   +  EL D+I  VD DGNG +DF EF+ +M         +EE++  F++ DK+ +GYI+  E++ ++  +GEK+  +++ +MI+EAD + DG++++ EF  M+
Sbjct:    2 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00024887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.177e-2837.24Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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