TCONS_00024822 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024822
Unique NameTCONS_00024822
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024822 ID=TCONS_00024822|Name=TCONS_00024822|organism=Clytia hemisphaerica|type=transcript|length=1782bp
ttgttttaaagaccagcctacagctctGTCGAGaATACACTATAATCAAA
AGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACATTTTGAT
AGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGCTGGTTCA
AGTCCAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGAGCCAAGT
ATATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGATTACCTGG
ACGTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCAAAACCTT
TGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATGGCGTCAT
CAACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTGATATGAC
AGGTTATGGTGGTTCGACCATACCAAAAGATTTAGAACGTTACGATTCAG
TTGAAATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTTGGGTTATGAA
AAATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTTTTGTGGT
TGCCAGCAattttggaGATGTTGTTGAGAAACTTATTATAATGAATGGTC
CCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACTCCTCAAG
TCCAGCTACATGTTCTTCTTTGCTGCACCATATCTTGCTGAATATGTTTT
GGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCAAGAAAAA
TGTTGACGGATGAAGAGATAGATGCTTACAGATACATGTTCACCAAGAAC
GGATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGAGACGTGG
TCGAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATTTGGGGAA
CGGCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATCAGGAAAGGAC
TGCACAACATGTGAGATCAAATACATTGAAGGTTCAACACACTGGGTCAA
CCAAGAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTATTTGAAAT
GCTGACGATAAAGATTAAATTATAAATACAAAAGTCACTTCAACGTTCAT
CCAACGTTTCACGAACATCACGGACGTGAAATTAATGTTGTTTTGACGTT
GAGTATTTAAGATGGATGATCAAAATGAGAATCGAATTATTACCTTTGAA
TGATAGTCTGGCGGATTTCTAACTGTTTTGGCGGAAATCAGGTCTTAAGA
ATAGGTTATAATATAAAAAAAACTTTCTCAACCAAGGCACGAGTCATAGT
TAAAAAAAGTGATATTTGGAACGATTTATTTTCTGAAAAATAATTATTAC
ACTGTGCTCTTACAAATAAGGCAAAGATAATGTTAGGGTTAATGTTATAG
GTAATTGATTGTTAAAAGCTCCATTTTGAAAAGCATTGAAAAATGTAATT
CGCTAACCCATGCTAACCTATACAAACGGCTTTTTCTGGGAAAACGAAGC
TATTGAGTTTAAAAAAGCCTCATGAGAAACTTTTTCTGTTGAGGATCAGG
AAAATCAAAGTTCATTATAGAATGTTTGATGTTTTTTTTTTTTATCAGTT
AGGTTTTTTTGTAGACGTGACAAATTCTAAATGCATCACATGTAAAAGAT
TTGGGTAAAAATGATTGTAAATTAACGTTTTTTAGATTTTTTGTTGTTTT
TAAACTATGATATACGCAAGAATATTCACTCTGAATGTAATTCGTCATAT
GCTTCTCTTTCGGCACTGGTTCTGACttccgg
Run BLAST on NCBI

protein sequence of TCONS_00024822-protein

>TCONS_00024822-protein ID=TCONS_00024822-protein|Name=TCONS_00024822-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
VLKTSLQLCREYTIIKRMAGKSIVEVIIKYILIVICSTFYVAISAIGWFK
SRNKPSRPINMKEEPSILQDPALGKHGTIRLPGRNIEMHYVANGERSKPL
MLLVHGFPEFWYSWRHQLVEFSKDYYTVAVDMTGYGGSTIPKDLERYDSV
EIAEDIKEFILALGYEKCTLVAHDWGAAVSFVVASNFGDVVEKLIIMNGP
SGRGMARCMSFTQLLKSSYMFFFAAPYLAEYVLGRDQSSVLKLFNKARKM
LTDEEIDAYRYMFTKNGFTGPLNYYRFALLRRGRTVQREIKAPTLIIWGT
ADTALGKEVAAASGKDCTTCEIKYIEGSTHWVNQEFPDEVNRLMRDYLKC
Run BLAST on NCBI

transcript from alignment at sc0000511:16795..23422+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024822 ID=TCONS_00024822|Name=TCONS_00024822|organism=Clytia hemisphaerica|type=transcript|length=6628bp|location=Sequence derived from alignment at sc0000511:16795..23422+ (Clytia hemisphaerica)
ttgttttaaagaccagcctacagctctGTCGAGGTAAGAAGATCGTTTGT
TTTTGTTAGAGTGCCTTTTTTTCGGAACTGGGATTAGATTTTGCCATTCC
CCATTTAGGAGGACGAACACCAAGGAAGGTCTCATTACAGAACTGATGGA
GTTTTTCTCTCGTTTTGGGCAATTTCCAAAATTCTGGAGGGAGACCATCA
GAGCCTGGGGCTTTTCTGCTTTTCATTTGGTATGTGGCTCtgtattcttt
tgaaaataagtcAGATGGTATTATATTCCATTGATCAAAAATTTTACGTA
TAGGATCAGGAGGAGCAGTGTGAAGGTTTTTGAAATGAGTTTCCCAACAT
TTAAGGCAGTTTTCTCCTTCAGTGAAGTTAACACTGTCAGCTTTTTGCCA
GAAATTCTTTAGAAGATCCCATGCTTGTTTTACTGAAGAGGATGATGCAG
GTtgttcaaaaatgatttcaagaTGTTATTTATACGACATAtgatgattt
ttcttttaaaattctttgaatacGTGTATATTCCAACATACCATCTAAAA
ATTTCCAGAAATAGGACTAAAAATGAAAGCCCCCCAAAGAATgctgaaaa
ttgccaaaatggAACCATTTCTTTTGATCCAAGAAAGAtcataatttttg
gacctaccccggtggggtagaggtcctattaattaacctgtgttcgttcg
tccgaCTACgactaaaaaaagggtttttaagactttgtgaaaaatccgat
agttaattttttctgattttttgtatgaaagttaTGATGAATGATATCCT
TATCATtattggtaaaagatggctcaagcagattgtcacaaaaaaaactt
ttcagctcatAAAACGAatatctttatctataagaatcgctatttataaa
caatgttcttagtcatattatttttattagtttttttaaagatgAAAATG
TAACGGTGAAAGggcaatggtttgagttttctagaaacacttattatttt
tcttggctgaaaaacgaatctttatttataagaatcactatttataagca
tagatcaatgttcttacccaaatttttatttttatgattatttttttcta
aaagaagaaaatctcaCGAGAGCgcaatggtttgagttttctagaaacct
catttataaaaaagctgtgcatttttctgaaattggattgttcttataaa
aaaatataaaaaattcaatagtgttgatagtttctcccgATAGATATGCT
gtcattatatttttttgtatcttgaccagttatgtcttatatgtatcatt
gtttcaatgttcattgattagttttgataaccaggtaggtccataaaagt
atcacttgtttcttcTTCcaagctttaaattctgaaaaatgttaaatgcc
caaaattgccaatatatttacAGCACTGATTGTAGATGTATGGAATGTCA
AGTTTAGGAAAAGACTACCAGATTTGATTCATCATTTTCAAACCAGTAAT
GATTAGAAAATATAGAGGAATAGTTTATTTTGTAGAAAATAAGTTAGTTT
TCCACGAGTTACCATTGCTTATAAATTTGGGAAGGTAATCAAGTAAAAGA
CATATCCACAATTTATAGCCATTGCTACCAGGAATAGGACTGAATCTTTA
GATTTTTCAAGggaaagaaatgaaattttgagttatgaatTCTATGAACA
GAAAGAACTTGCTTTgattagttttttttcacaGTAGCTACAGTTGCTGG
GTCTCAAAATGGCTAAAATAAACTGAACTTGAGATATATGTAGTTTGCCT
GTTGGATTTTAAAAGTAtcctaaattttctaaatttcagaATACACTATA
ATCAAAAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACAT
TTTGATAGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGCT
GGTTCAAGTCCAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGAG
CCAAGTATATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGATT
ACCTGGACGTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCAA
AACCTTTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATGG
CGTCATCAACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTGA
TATGACAGGTTTATTAaacatttcttttcaattatttttcttttgctttg
acTCTACATTGTAAAACAATGCTctattcaaaaatattctttattttaGC
TAAAAATCGTGCTAGGACTGAGATTTTATGGACTGAGATAAAAGCTAGAT
AAAGTCTGTTTCGGGATAACAAATAATGTGAAATTGTAGCGCTATCTTTg
ccaaaaatgtacaaaaaattaCTTGGCAAAAGTCAGTCGTCTAGATCAAT
TAGATCAATTTTATCTTTGATAGGTTATGGTGGTTCGACCATACCAAAAG
ATTTAGAACGTTACGATTCAGTTGAAATTGCAGAGGATATCAAAGAGTTT
ATTTTGGCGTTGGGTTATGAAAAATGTACCTTGGTGGCTCATGATTGGGG
TGCAGCAGTTTCTTTTGTGGTTGCCAGCAGTAAGTCTAAAACAAAAAGTC
TTTCATTTTGTTCTTCTTATACCTTTCTATAGTTTCTACACATAAAACCA
ACCTTACcaggggggtcagtgtactagaaggcggcatgtatgtgtactac
aaggtatttttcaaaacttgacacccactcacccctgaagtacaccatac
tacatggaaaaatcccaaaaccaccccatacccccatTTACTACCGGGTA
CTACCTGGAAAAATCACTgggtaaacatttttccaaaaatcgagaAATCA
GGGAGactttttttttcggaaaactttttttttggaaaatcaggaaatcg
ggaaaacttttttccaaaaatcagaaaaacaggaaaatgtttctcaaaaa
tccaaaatgcgtgagaaatcaaacttttcaaaaattgcgtgagaccATGT
GAAAATGTGTGAGTCTCACACCCAATGCGTGAGAACTGGCACCTCTGATG
TTCGAATGTTTCAATTCGAATGTTAGAATGTTTACATTAANacttttttc
caaaaatcgggaaattgggaaaacttttttccaaaaatcaggaaatcgag
AAATCGGGAAacctttttttcggaaaattgggaaattgggaaaacttttt
ttccaaaaatcagaaaaacaggaaaattttctcaaaaatccaaaatgcgt
gagaaatcaaaattttcatgagaaatgcatgagtctcacaaccaatgcgt
gagagttgaCACCTCTAATGTACGaatgttgaatgtttgaattcacatgt
tcgaatgtttacattgactcgataaacctttatttcagtgggatctggta
ggatttcaattcattccaagaagtttggaagaatgatctttgacaaactt
ggcttgatcaatCTATAATAGAACAACTTTGCATTTCGATTTTAGCAGAT
AAGTTCTgaactaaaaaaaatttatttttatttccacACTGTTAACATca
attttggacccaacacctctattttggtacacaggtagtaaaaatcaaaa
tcgattttggacccaccaccccaattatagtacacaggtagtacatgaca
aatttttttctcaaacacccacccaccccaggatacatgcTACCTTCTGG
TACACTTGACCTTACCTCAGAAACACGGATTTAAAGGAGTTGGAGATTAT
TTATCTTTTCATTCTTCATAAATCGGTTTTCGCTAGCTTAATTAACTAAA
AAGTTGTAATAGtacagttttaattttttagattttggaGATGTTGTTGA
GAAACTTATTATAATGAATGGTCCCAGTGGGCGTGGAATGGCTCGTTGTA
TGTCCTTTACTCAACTCCTCAAGTCCAGCTACATGTTCTTCTTTGCTGTA
AGTcttattaaagtatttttcaCGGATTAACCTAGTAATAATAGACAGTC
ATTCGATTGTTTTAAGGcttggctatctatgaactaaacggaacattgga
agcaGTGTGATTCGAACCGGTAACCCCTGGTTTGAGGTGACCACTCGGTC
ATTGCTCTAAAAACATTGTTAAGTTATTATACATTGATGGGCTGGActct
tgttgataatttttcatATGCAGTATTTAAGTCTTTCAACCCTTTTAAGG
TTCTCTTGCAACTTACCCAGGTTGATCCCCTTTTCATACACTTGAAAACC
CGTCTtcggttaaaaaaaaaactccgaaAAATCATTCAACCTCTATTATA
TGAATTTAGACatagttttggaaaaaaaagaatcaataatgtaataataC
CATGCAATTGTTATATGTTTTTCAGCTCAGCCAGGTGCTTTCATACTTTC
TTTAGAACGCCACCGTATGACTCAAGGGAGGCTAAGACCTTACGTATGCT
TGTTAAAATAACTCTTTCTTTCTCTATCAGGCACCATATCTTGCTGAATA
TGTTTTGGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCAA
GAAAAATGTTGACGGATGAAGAGATAGATGCTTACAGATACATGTTCACC
AAGAGTAAGGTTTCTCTTTCAATAAATTCGTGTTAAGTCAATTATAATTG
GAGTCGTGAAGAGGGGAATAATAATTGTGGAAAGGAAAGATAAACTAATG
CCTAAGAGTCTCAAAAAttgtgttttgatattttttgtgtttttgttaaC
TCTCTCTATAGCCAAATTATAGGTGAATTGAATGGAAAGAATCTCAAACC
TTAATAAATGGGTTGGAAAATGAATATCCTTGGTgagacaataaaaaaag
aaaaacattttcacaaaaattgataagACATAACATAACAAAAATTTCCC
TGTTAGAAAATTTCCTGATTAACGAGTGGAGATGTTTACTAGGTACCCGA
GAGCACTACATCTCCAGGTTTTGTTGAATAGCAGTTCGTGTTTAGTTTAA
GAAGCCTGATCAAGTCGAGTAGTTAGAGATCAGTTTGaccctttttgaaa
ttttcttttcctttatACTCTTTTAGACGGATTTACTGGACCGTTGAATT
ATTATCGATTTGCTCTGTTGAGACGTGGTCGAACGGTTCAACGCGAAATC
AAAGCACCGACGCTCATTATTTGGGGAACGGCTGATACTGCACTGTAAGT
CTTTCTTCCGGATGAGAGGGAGTTTTCacattggtcatttgaagtaataa
aaaactactcgttctttagaaaaagtaacgaaaTTGTTTCATTACTgttt
aacgaccaaccaaatcaaataagagcttgtaaaaattcATCTCGTCCCCT
TTCTTCTAACTAATCAAAATAATCTCTTTGGAAAACgcttacatttttta
tttttaacattAGGAAACAGGTATATTTTCAATTCTTGACTTACCTCATC
CTCCAACTAATCTGAATGAGATCATTAATTGTGAATCGTAAAAGTCAATA
GAATAATGAAAACAGGAATCAATTGTTCAGCATAGAatattgataatttg
ataaTGATACCTCGTTTTTGACTTATCCCATAAAAAGAGTGAATAttgaa
tttaaaggttttaagcTTTTGAACCATTGAACCAGGATCCACGTAGGTTA
CTACTAGGTATTACGTGAAGAAGTCTCTGATAAAAGAATGCTTTCCATTG
TGATTTTAAAAGGGGTAAAGAGGTCGCAGCGGCATCAGGAAAGGACTGCA
CAACATGTGAGATCAAATACATTGAAGGTTCAACACACTGGGTCAACCAA
GAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTATTTGAAATGCTG
ACGATAAAGATTAAATTATAAATACAAAAGTCACTTCAACGTTCATCCAA
CGTTTCACGAACATCACGGACGTGAAATTAATGTTGTTTTGACGTTGAGT
ATTTAAGATGGATGATCAAAATGAGAATCGAATTATTACCTTTGAATGAT
AGTCTGGCGGATTTCTAACTGTTTTGGCGGAAATCAGGTCTTAAGAATAG
GTTATAATATAAAAAAAACTTTCTCAACCAAGGCACGAGTCATAGTTAAA
AAAAGTGATATTTGGAACGATTTATTTTCTGAAAAATAATTATTACACTG
TGCTCTTACAAATAAGGCAAAGATAATGTTAGGGTTAATGTTATAGGTAA
TTGATTGTTAAAAGCTCCATTTTGAAAAGCATTGAAAAATGTAATTCGCT
AACCCATGCTAACCTATACAAACGGCTTTTTCTGGGAAAACGAAGCTATT
GAGTTTAAAAAAGCCTCATGAGAAACTTTTTCTGTTGAGGATCAGGAAAA
TCAAAGTTCATTATAGAATGTTTGATGTTTTTTTTTTTTATCAGTTAGGT
TTTTTTGTAGACGTGACAAATTCTAAATGCATCACATGTAAAAGATTTGG
GTAAAAATGATTGTAAATTAACGTTTTTTAGATTTTTTGTTGTTTTTAAA
CTATGATATACGCAAGAATATTCACTCTGAATGTAATTCGTCATATGCTT
CTCTTTCGGCACTGGTTCTGACttccgg

Coding sequence (CDS) from alignment at sc0000511:16795..23422+

>TCONS_00024822 ID=TCONS_00024822|Name=TCONS_00024822|organism=Clytia hemisphaerica|type=CDS|length=7371bp|location=Sequence derived from alignment at sc0000511:16795..23422+ (Clytia hemisphaerica)
gttttaaagaccagcctacagctctGTCGAGaATACACTATAATCAAAAG
AATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACATTTTGATAG
TGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGCTGGTTCAAG
TCCAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGAGCCAAGTAT
ATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGATTACCTGGAC
GTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCAAAACCTTTG
ATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATGGCGTCATCA
ACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTGATATGACAG
GTTATGGTGGTTCGACCATACCAAAAGATTTAGAACGTTACGATTCAGTT
GAAATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTTGGGTTATGAAAA
ATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTTTTGTGGTTG
CCAGCAattttggaGATGTTGTTGAGAAACTTATTATAATGAATGGTCCC
AGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACTCCTCAAGTC
CAGCTACATGTTCTTCTTTGCTGCACCATATCTTGCTGAATATGTTTTGG
GACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCAAGAAAAATG
TTGACGGATGAAGAGATAGATGCTTACAGATACATGTTCACCAAGAACGG
ATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGAGACGTGGTC
GAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATTTGGGGAACG
GCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATCAGGAAAGGACTG
CACAACATGTGAGATCAAATACATTGAAGGTTCAACACACTGGGTCAACC
AAGAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTATTTGAAATGC
TGAgttttaaagaccagcctacagctctGTCGAGaATACACTATAATCAA
AAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACATTTTGA
TAGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGCTGGTTC
AAGTCCAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGAGCCAAG
TATATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGATTACCTG
GACGTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCAAAACCT
TTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATGGCGTCA
TCAACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTGATATGA
CAGGTTATGGTGGTTCGACCATACCAAAAGATTTAGAACGTTACGATTCA
GTTGAAATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTTGGGTTATGA
AAAATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTTTTGTGG
TTGCCAGCAattttggaGATGTTGTTGAGAAACTTATTATAATGAATGGT
CCCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACTCCTCAA
GTCCAGCTACATGTTCTTCTTTGCTGCACCATATCTTGCTGAATATGTTT
TGGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCAAGAAAA
ATGTTGACGGATGAAGAGATAGATGCTTACAGATACATGTTCACCAAGAA
CGGATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGAGACGTG
GTCGAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATTTGGGGA
ACGGCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATCAGGAAAGGA
CTGCACAACATGTGAGATCAAATACATTGAAGGTTCAACACACTGGGTCA
ACCAAGAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTATTTGAAA
TGCTGAgttttaaagaccagcctacagctctGTCGAGaATACACTATAAT
CAAAAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACATTT
TGATAGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGCTGG
TTCAAGTCCAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGAGCC
AAGTATATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGATTAC
CTGGACGTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCAAAA
CCTTTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATGGCG
TCATCAACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTGATA
TGACAGGTTATGGTGGTTCGACCATACCAAAAGATTTAGAACGTTACGAT
TCAGTTGAAATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTTGGGTTA
TGAAAAATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTTTTG
TGGTTGCCAGCAattttggaGATGTTGTTGAGAAACTTATTATAATGAAT
GGTCCCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACTCCT
CAAGTCCAGCTACATGTTCTTCTTTGCTGCACCATATCTTGCTGAATATG
TTTTGGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCAAGA
AAAATGTTGACGGATGAAGAGATAGATGCTTACAGATACATGTTCACCAA
GAACGGATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGAGAC
GTGGTCGAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATTTGG
GGAACGGCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATCAGGAAA
GGACTGCACAACATGTGAGATCAAATACATTGAAGGTTCAACACACTGGG
TCAACCAAGAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTATTTG
AAATGCTGAgttttaaagaccagcctacagctctGTCGAGaATACACTAT
AATCAAAAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACA
TTTTGATAGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGC
TGGTTCAAGTCCAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGA
GCCAAGTATATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGAT
TACCTGGACGTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCA
AAACCTTTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATG
GCGTCATCAACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTG
ATATGACAGGTTATGGTGGTTCGACCATACCAAAAGATTTAGAACGTTAC
GATTCAGTTGAAATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTTGGG
TTATGAAAAATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTT
TTGTGGTTGCCAGCAattttggaGATGTTGTTGAGAAACTTATTATAATG
AATGGTCCCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACT
CCTCAAGTCCAGCTACATGTTCTTCTTTGCTGCACCATATCTTGCTGAAT
ATGTTTTGGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCA
AGAAAAATGTTGACGGATGAAGAGATAGATGCTTACAGATACATGTTCAC
CAAGAACGGATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGA
GACGTGGTCGAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATT
TGGGGAACGGCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATCAGG
AAAGGACTGCACAACATGTGAGATCAAATACATTGAAGGTTCAACACACT
GGGTCAACCAAGAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTAT
TTGAAATGCTGAgttttaaagaccagcctacagctctGTCGAGaATACAC
TATAATCAAAAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAAT
ACATTTTGATAGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATT
GGCTGGTTCAAGTCCAGAAATAAACCATCAAGACCTATCAATATGAAAGA
AGAGCCAAGTATATTACAAGATCCTGCTCTCGGAAAACATGGTACTATCC
GATTACCTGGACGTAATATTGAAATGCATTACGTTGCAAATGGTGAAAGA
TCAAAACCTTTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTC
ATGGCGTCATCAACTTGTAGAATTCTCCAAGGATTATTATACTGTTGCCG
TTGATATGACAGGTTATGGTGGTTCGACCATACCAAAAGATTTAGAACGT
TACGATTCAGTTGAAATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTT
GGGTTATGAAAAATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTT
CTTTTGTGGTTGCCAGCAattttggaGATGTTGTTGAGAAACTTATTATA
ATGAATGGTCCCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCA
ACTCCTCAAGTCCAGCTACATGTTCTTCTTTGCTGCACCATATCTTGCTG
AATATGTTTTGGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAA
GCAAGAAAAATGTTGACGGATGAAGAGATAGATGCTTACAGATACATGTT
CACCAAGAACGGATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGT
TGAGACGTGGTCGAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATT
ATTTGGGGAACGGCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATC
AGGAAAGGACTGCACAACATGTGAGATCAAATACATTGAAGGTTCAACAC
ACTGGGTCAACCAAGAATTTCCCGATGAAGTGAACCGATTGATGCGTGAT
TATTTGAAATGCTGAgttttaaagaccagcctacagctctGTCGAGaATA
CACTATAATCAAAAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTATCA
AATACATTTTGATAGTGATTTGCTCAACCTTTTATGTTGCCATCAGTGCG
ATTGGCTGGTTCAAGTCCAGAAATAAACCATCAAGACCTATCAATATGAA
AGAAGAGCCAAGTATATTACAAGATCCTGCTCTCGGAAAACATGGTACTA
TCCGATTACCTGGACGTAATATTGAAATGCATTACGTTGCAAATGGTGAA
AGATCAAAACCTTTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTGGTA
TTCATGGCGTCATCAACTTGTAGAATTCTCCAAGGATTATTATACTGTTG
CCGTTGATATGACAGGTTATGGTGGTTCGACCATACCAAAAGATTTAGAA
CGTTACGATTCAGTTGAAATTGCAGAGGATATCAAAGAGTTTATTTTGGC
GTTGGGTTATGAAAAATGTACCTTGGTGGCTCATGATTGGGGTGCAGCAG
TTTCTTTTGTGGTTGCCAGCAattttggaGATGTTGTTGAGAAACTTATT
ATAATGAATGGTCCCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTTTAC
TCAACTCCTCAAGTCCAGCTACATGTTCTTCTTTGCTGCACCATATCTTG
CTGAATATGTTTTGGGACGTGATCAAAGTTCAGTATTGAAATTGTTCAAC
AAAGCAAGAAAAATGTTGACGGATGAAGAGATAGATGCTTACAGATACAT
GTTCACCAAGAACGGATTTACTGGACCGTTGAATTATTATCGATTTGCTC
TGTTGAGACGTGGTCGAACGGTTCAACGCGAAATCAAAGCACCGACGCTC
ATTATTTGGGGAACGGCTGATACTGCACTGGGTAAAGAGGTCGCAGCGGC
ATCAGGAAAGGACTGCACAACATGTGAGATCAAATACATTGAAGGTTCAA
CACACTGGGTCAACCAAGAATTTCCCGATGAAGTGAACCGATTGATGCGT
GATTATTTGAAATGCTGAgttttaaagaccagcctacagctctGTCGAGa
ATACACTATAATCAAAAGAATGGCAGGGAAAAGCATTGTTGAAGTCATTA
TCAAATACATTTTGATAGTGATTTGCTCAACCTTTTATGTTGCCATCAGT
GCGATTGGCTGGTTCAAGTCCAGAAATAAACCATCAAGACCTATCAATAT
GAAAGAAGAGCCAAGTATATTACAAGATCCTGCTCTCGGAAAACATGGTA
CTATCCGATTACCTGGACGTAATATTGAAATGCATTACGTTGCAAATGGT
GAAAGATCAAAACCTTTGATGTTGCTTGTCCATGGTTTCCCAGAATTCTG
GTATTCATGGCGTCATCAACTTGTAGAATTCTCCAAGGATTATTATACTG
TTGCCGTTGATATGACAGGTTATGGTGGTTCGACCATACCAAAAGATTTA
GAACGTTACGATTCAGTTGAAATTGCAGAGGATATCAAAGAGTTTATTTT
GGCGTTGGGTTATGAAAAATGTACCTTGGTGGCTCATGATTGGGGTGCAG
CAGTTTCTTTTGTGGTTGCCAGCAattttggaGATGTTGTTGAGAAACTT
ATTATAATGAATGGTCCCAGTGGGCGTGGAATGGCTCGTTGTATGTCCTT
TACTCAACTCCTCAAGTCCAGCTACATGTTCTTCTTTGCTGCACCATATC
TTGCTGAATATGTTTTGGGACGTGATCAAAGTTCAGTATTGAAATTGTTC
AACAAAGCAAGAAAAATGTTGACGGATGAAGAGATAGATGCTTACAGATA
CATGTTCACCAAGAACGGATTTACTGGACCGTTGAATTATTATCGATTTG
CTCTGTTGAGACGTGGTCGAACGGTTCAACGCGAAATCAAAGCACCGACG
CTCATTATTTGGGGAACGGCTGATACTGCACTGGGTAAAGAGGTCGCAGC
GGCATCAGGAAAGGACTGCACAACATGTGAGATCAAATACATTGAAGGTT
CAACACACTGGGTCAACCAAGAATTTCCCGATGAAGTGAACCGATTGATG
CGTGATTATTTGAAATGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013952XLOC_013952Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024822-proteinTCONS_00024822-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024822-exon-sc0000511-1491911889:16795..16827TCONS_00024822-exon-sc0000511-1491911889:16795..16827Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:16795..16827TCONS_00024822-exon-sc0000511-1510915933:16795..16827Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:16795..16827TCONS_00024822-exon-sc0000511-1575043694:16795..16827Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1491911889:18634..19002TCONS_00024822-exon-sc0000511-1491911889:18634..19002Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:18634..19002TCONS_00024822-exon-sc0000511-1510915933:18634..19002Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:18634..19002TCONS_00024822-exon-sc0000511-1575043694:18634..19002Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1491911889:19268..19423TCONS_00024822-exon-sc0000511-1491911889:19268..19423Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:19268..19423TCONS_00024822-exon-sc0000511-1510915933:19268..19423Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:19268..19423TCONS_00024822-exon-sc0000511-1575043694:19268..19423Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1491911889:20676..20791TCONS_00024822-exon-sc0000511-1491911889:20676..20791Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:20676..20791TCONS_00024822-exon-sc0000511-1510915933:20676..20791Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:20676..20791TCONS_00024822-exon-sc0000511-1575043694:20676..20791Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1491911889:21325..21448TCONS_00024822-exon-sc0000511-1491911889:21325..21448Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:21325..21448TCONS_00024822-exon-sc0000511-1510915933:21325..21448Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:21325..21448TCONS_00024822-exon-sc0000511-1575043694:21325..21448Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1491911889:21921..22038TCONS_00024822-exon-sc0000511-1491911889:21921..22038Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:21921..22038TCONS_00024822-exon-sc0000511-1510915933:21921..22038Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:21921..22038TCONS_00024822-exon-sc0000511-1575043694:21921..22038Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1491911889:22557..23422TCONS_00024822-exon-sc0000511-1491911889:22557..23422Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1510915933:22557..23422TCONS_00024822-exon-sc0000511-1510915933:22557..23422Clytia hemisphaericaexon
TCONS_00024822-exon-sc0000511-1575043694:22557..23422TCONS_00024822-exon-sc0000511-1575043694:22557..23422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000511supercontigsc0000511:16795..23422 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.2731	7.03444	3.3565	4.20599	11.6828	0.79019	12.358	33.7342	1.49377	11.0658	6.87613	0.000774295	4.88357	6.20075	1.75713	3.90339e-07	1.63782	1.89695e-10	0	1.83242	2.9209e-10	6.65257	5.32532	2.99674	1.02303	1.14447	4.13047	7.25816	4.80568	2.90092
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000073AB_hydrolase_1
IPR000639Epox_hydrolase-like
IPR029058AB_hydrolase
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00024822 vs. Swiss-Prot (Human)
Match: EPHX4 (Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.977e-63
Identity = 118/314 (37.58%), Postives = 182/314 (57.96%), Query Frame = 3 
Query:  150 KSRNKPSRPINMKEEPSILQDPALGKHGTIRLPGRNIEMHYVANGERSKPLMLLVHGFPEFWYSWRHQLVEFSKDYYTVAVDMTGYGGSTIPKDLERYDSVEIAEDIKEFILALGYEKCTLVAHDWGAAVSFVVASNFGDVVEKLIIMNGPSGRGMARCM--SFTQLLKSSYMFFFAAPYLAEYVLGRDQSSVLK-LFNK-----ARK--MLTDEEIDAYRYMFTKNG-FTGPLNYYR--FALLRRGRTVQREIKAPTLIIWGTADTALGKEVAAASGKDCTT-CEIKYIEGSTHWVNQEFPDEVNRLMRDYLK 1049
            ++  +P+R    +  P+ L DP+LG H  +R+    +  HYVA GER KPLMLL+HGFPEFWYSWR+QL EF  +Y  VA+D+ GYG +  P   + Y    +  DIK+ + +LGY KC L+ HDWG  +++++A  + ++V KLI++N P        +     QLLKSSY +FF  P+  E++   +   VLK LF        RK   LT E+++AY Y+F++ G  +GP+N+YR  F+ L     +   +  PTL++WG  D  +  E+A  +         +  +  ++HW+ Q+ PD VN+L+  +LK
Sbjct:   49 QTFRRPAR----EHPPACLSDPSLGTHCYVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRYQLREFKSEYRVVALDLRGYGETDAPIHRQNYKLDCLITDIKDILDSLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVINFPHPNVFTEYILRHPAQLLKSSYYYFFQIPWFPEFMFSINDFKVLKHLFTSHSTGIGRKGCQLTTEDLEAYIYVFSQPGALSGPINHYRNIFSCLPLKHHM---VTTPTLLLWGENDAFMEVEMAEVTKIYVKNYFRLTILSEASHWLQQDQPDIVNKLIWTFLK 355
The following BLAST results are available for this feature:
BLAST of TCONS_00024822 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHX42.977e-6337.58Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 ... [more]
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