TCONS_00024813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024813
Unique NameTCONS_00024813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024813 ID=TCONS_00024813|Name=TCONS_00024813|organism=Clytia hemisphaerica|type=transcript|length=402bp
ACCACACACTTGAAATATTTCAGCAGAGGTGTCGTGAAGCTGGAATTCGA
TTTGTTGATATCCCCTACAAAATTCCTACTGAAGTCACTGGAACCGAATA
CGCCATAGCAGGAATTCTACTTCTTTTATGGCTAAGATATGCCGACGACA
TTGTCCTAGCAGCTTGGTGCATTGGAGATCTcgagaaaatgattgagata
taaACACGAAGTGTTTGTTGAATACTGTCTAAAACTCAATCCGGATAAAA
CCGAAACCCTTATTCTAAACTGGAAATTAGGAAAACCAACTATAAACGAC
ATATACCCACAGTCAATTATAACCTTGAATGGGATCCCAATTAGAAACTC
AAAATCATTCAAATACCTGGGAGCATTTATCGAATATGACAACAGTTCAA
CA
Run BLAST on NCBI

transcript from alignment at sc0000510:182368..182769

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024813 ID=TCONS_00024813|Name=TCONS_00024813|organism=Clytia hemisphaerica|type=transcript|length=402bp|location=Sequence derived from alignment at sc0000510:182368..182769 (Clytia hemisphaerica)
TGTTGAACTGTTGTCATATTCGATAAATGCTCCCAGGTATTTGAATGATT
TTGAGTTTCTAATTGGGATCCCATTCAAGGTTATAATTGACTGTGGGTAT
ATGTCGTTTATAGTTGGTTTTCCTAATTTCCAGTTTAGAATAAGGGTTTC
GGTTTTATCCGGATTGAGTTTTAGACAGTATTCAACAAACACTTCGTGTt
tatatctcaatcattttctcgAGATCTCCAATGCACCAAGCTGCTAGGAC
AATGTCGTCGGCATATCTTAGCCATAAAAGAAGTAGAATTCCTGCTATGG
CGTATTCGGTTCCAGTGACTTCAGTAGGAATTTTGTAGGGGATATCAACA
AATCGAATTCCAGCTTCACGACACCTCTGCTGAAATATTTCAAGTGTGTG
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013944XLOC_013944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024813-exon-sc0000510-1491911889:182368..182769TCONS_00024813-exon-sc0000510-1491911889:182368..182769Clytia hemisphaericaexon
TCONS_00024813-exon-sc0000510-1510915933:182368..182769TCONS_00024813-exon-sc0000510-1510915933:182368..182769Clytia hemisphaericaexon
TCONS_00024813-exon-sc0000510-1575043694:182368..182769TCONS_00024813-exon-sc0000510-1575043694:182368..182769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:182368..182769 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.183823	0.179256	0.208133	0	0.247895	0.58767	1.18166	0.663756	0.154904	0.57562	0.55871	0.122425	0.244509	0	0	0.560081	0.137995	0.14144	0.195407	1.22688	0.71092	0	0	0.191618	3.15779	2.46597	0	0	0.408057	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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