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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024619 ID=TCONS_00024619|Name=TCONS_00024619|organism=Clytia hemisphaerica|type=transcript|length=866bp
AAAGTAGCTCCAGAGTTCGCGCGCTTTTTCAATGATTGGGCGCTAAATGT
gatagaaaaattttaaatcaatttgGCATAAAACCTTCAAGTTTTGTTAA
ACCCTTGTGTTGGACTTTGGTGGAAGATAAAATAGACAGATATGGGAAGA
AAGTCAAGTGTTGAAGAAGAAGTCAGTTCTGATGACGAGACTTACGTGGA
AAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGTCAACTTCCGATGGC
TGAAAACACCAACCGGATTTCTTAAGATTGTCCAATTTGGTACTATGTTG
ATGGGACTCATTTTGGTTGGATCTGTTACCACAGGAGATCGTGCAAGCAT
ggagttttttgttttcacagTGACTTCTGCTTGGGTATTCATCATAATGA
TTTTAATCACGCTAATTTTGGATGTGTACCAAAGTATCCCCAGAGTTCTA
ATCAATAACAGAGTGCTCTTCATTGGAAGTTcAATTGGTGGTTTGGTACT
GATGGGAAGTTCAGCAATCATGatggcaaaaaataaaaaccataAAAGTG
TGACCACAGCAGGgatttttggtttgatttcaatGGGGCTGACCATGATT
GAAGCTGTTTATTATTTGATTCAATGGAAGAGATATGGTGCGAATCCCGA
ACTCAGTGAACCATTACTGGATAATGACAATGACAGTGACTGAAGACCAC
TTGATCCCTCACAGAAGTTATTGTTAATAGTTGAACATTGTAATTTTTTA
GTTgttgatattatttttaaaagttattgTATTTTAGTAAAccatttttg
ataaataataaattattttgaaattaaaatttaaacaGATGGTTGACTTG
TTTTGCTGTTCGTATG Run BLAST on NCBI protein sequence of TCONS_00024619-protein >TCONS_00024619-protein ID=TCONS_00024619-protein|Name=TCONS_00024619-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MGRKSSVEEEVSSDDETYVEKPNAFKELLKFVNFRWLKTPTGFLKIVQFG
TMLMGLILVGSVTTGDRASMEFFVFTVTSAWVFIIMILITLILDVYQSIP
RVLINNRVLFIGSSIGGLVLMGSSAIMMAKNKNHKSVTTAGIFGLISMGL
TMIEAVYYLIQWKRYGANPELSEPLLDNDNDSD Run BLAST on NCBI transcript from alignment at sc0000506:37406..44715+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024619 ID=TCONS_00024619|Name=TCONS_00024619|organism=Clytia hemisphaerica|type=transcript|length=7310bp|location=Sequence derived from alignment at sc0000506:37406..44715+ (Clytia hemisphaerica)
AAAGTAGCTCCAGAGTTCGCGCGCTTTTTCAATGATTGGGCGCTAAATGT
gatagaaaaattttaaatcaatttgGCATAAAACCTTCAAGTTTTGTTAA
ACCCTTGTGTTGGACTTTGGTGgtaagcacttttttatgtttttatgatT
AGTATTCTCTATCAGCTCAGGCTctgacataattttttgttatattgAGA
AGGTAGTAATTAGTTTTGAAGGTTTAATACCGTGATACTTCGTTATTGAT
TATGTACTTATTATGGTGTACTCATCCAATTCGTTGAATCCGATGATTGA
CCATTACTGTTGTACTGTAATGCTCTTCTGAAGTTGAAATAATTAGGAAG
CAGCGGTTCCTCTGGCAGTGTACTGAGGAATTGGTCAAGATGCTGTTTAA
AAGTATGTTTGGTACAGTTTGTgagaggaccctgccgacgacGCACCGGa
ttgtccggtgtatttgtccggtggcaaaaagtatcctttcgctacaccgg
acgcaataagtccggtgtcagtccggtgttgcatacagggAATAGACCTT
CTTTCAAAGAGGAcgccctgttgaataattatgtagtccagcagaaaaac
aatgataaaaccatgcataattattacaatatgcatgatacagtaattat
gcatggctctatcattgcttttatggctggactacataattattcaacag
gacgtcctctttgaaaaaaggtctattttggacaccggacatttatgaaa
caaaaaattaagaaacaccggacgcaccggactggtcatgtccggtgttt
tgattgtccggtggaaaaaatatccttctccaacACCGGACATACGACTT
TCTTAAGTCCAGTGTAGAgattgtggtaaaaaaaattctcattttacacc
ggactttcgcgtgtccggtgtttgtTAAGTCCGGTGCATCGGCAGGGTCC
TTTTGTGAAGTTTCTAAGGGATTTTGGCAGAGCATTGAAGAGCCTTGGTC
CTTCTTGTGAGAGACAACCTCTccagatatttttatgtttgacatttATA
GCTTTCAGATTGCATTTTCTACCCAGTCTCTGATTTGTGTAAGAATGCAC
GCCTCCTGCCTTGTCATTGACATTGTAGTTGAAATTGGGGGCAATGTCTT
CTAGTATGCACCacgtgaagtcaggtaacttgcatcagatCATCAgtagt
ggagggaaacttgcatagccatcaacaAATGATtgaccaaccaaagcagc
aaaatttcaaaacaaattaactacgcagcttcgctcgcagctctactcta
ccatttttgttttgatttaactttgtattgtaatgaccagccaggtcatt
cattaaTCATttgtcatttgagggctatgtaagtttgcctccactgatgc
gaAGTTGCTCGACTTCACGGTACATCATTTTGTCAAAAAGCTACCGTCGT
TATGGTTTCAAAATGAAATGGATGGCCCAATAGAGTTTTGCCTAAATCTG
AAAGAGATAATTAGTTTTGTAAGagccatagaccttttttcaaaaaggcc
accctgttgaataattatgtagtccagcagaaaaacaatgataaaaccat
gcataattattacaatatgcatgatacagtNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctctttcattgtttttat
ggctggactacataattattcaacaggatgtcctctttgaaaaaaggtct
ataattatgtagtccagcagaaaaacaatgatgcgtaattattacaatat
gcatgatacagtacaCTATCATTGTTtctatggctggactacataattat
tcaacaggacgtcctctttgaaaaaaggtctattgtctgTAAGAATCAGG
CAGGTGATGGAAGTAACCCTCAAATAATGGGCCATTCCAAGAAACCACca
ttaggcggtcatcgaaaaattgttttattcgcgtcacccgcccgcatcaa
attttccgctgattttccactgcggagatgcggaaaaactctgtcgacca
tcgaaaaattgttttgcttgcgTTACCACCCGaccctgagttactggcgt
gattaaaaaaaccccggaatgtttttgaccgcccgtccgtctgcatgcat
ttttaacacccgttgtgacgcgaacagagcattttttcgatgaccgcctt
agAGATCTATCCTTTTGTTTTTGGATTACATGATCTTTTGCCATTGAAAA
ACAGACTAttataccgtgagaggtcctaaagccgacaccCCTGcttaatt
ccgaccccccaaataactgttatgaaaaaaaattctatgtttacaaacat
tccctctccaagttgaacgataaactattgctagaactctcgaaacaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtaatgtaattaaaaagtgtgagttgtaaaaataattatctt
ttattctggatcagttgctcatatttaaaacgataacagtgtTGTAATaa
aacagactaaattgcaaaaagggcgcgaagttgaaaaaatggCGGATGTG
GTAGCaattaatttgaataacaaacatcgaatcaatgaggcggcaactat
caacaccctctttaccacccataagtccggatgtttatttacggaaggcc
cacaatcaagccaagtgccattgtaaagtaataaaaaccaggcttgatta
agtaacgtttcaaaatgagcatgctcgtacacagacctcttttatatttt
cgtgtgctttggaaaatcaaaacatctcattactttttatgatgctgtta
ctactgttgtcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNctgttactactgttgtcatttatgggcatattgcaataaaaa
aatatgttttgttataagaagcaattattgttatttggatcaattggttc
agtgtatcaaatctctcagtttagttgacactttggtatctttgttgcgt
cacagcgaacggtttgtttttatttttgtttgtatctttgaaagacccca
tcgaatttaggcagtggtgtcggctttaggacctctcacggtaagGAGTA
ATACTAGGCAAtgctcacaaatatcttcattttgtgtCATTTTACTTTGG
AAATATGAAACAGTCAGCCGGTTAATAAttttgttaggaatttgaattTC
ACTAATGTTGACTCATCTTCTCCTGTTAAGATATCACttatatttttatc
atttatatactacagtaattttttttcaaaatttcttcacCAGTCTTCAC
TGTTGTTTTGTTTAGGAAGATAAAATAGACAGATATGGGAAGAAAGTCAA
GTGGTGAGTTGTGACTATTTTGCTGCACTTTTTATTGATAGCTACATAAA
GAAAAGACTAGATATCATAACCAAAAGGCCATGAGGAGTTGATAAAGAAA
TATAATAAAGAAGGGGATATAAATTTGTTGAGAGAATCAAATTTTTGGAT
AAGCTGTAAAATCATCTGACGGGTGACTCATTAAAAAAGTATAAGGGTTT
CATGACTATCTTTGTCTAACTGTGATCATAAGAAAATATATTCATATATT
TTCCTGTTTTTGAGCCATGTAAGGTGACTCCACACTAATCAACCTAAAAC
ACATTCAAAAGTGGTTTTTAAAATTGCTTTCAAGAGATGTTTGTACCAGA
GGGAAGATTCCTTTCCTGTATTTTCTTCAAAGAAGAAAACTCACCCAGTT
TACAAGCCATTCCCCGTTTTTAAGGTAACTTCAAAGTGTAATAGTATTTG
TGCATTGTAAGCATAAGCAATTAAAAACAGAATTGAAAGAATTCCAAATT
TGAGAAGTGCAAAATGGGATCTCATTAACCATAAGTAATTTTTATGACAA
TGGTGAAATTATTTCAGTTGAAGAAGAAGTCAGTTCTGATGACGAGACTT
ACGTGGAAAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGTCAACTTC
CGATGGCTGAAAACACCAACCGGATTTCTTAAGATTGTCCAATTTGGTAC
TATGTTGATGGGACTCATTTTGGTTGGATCTGTTACCACAGGAGATCGTG
CAAGCATggagttttttgttttcacagTGACTTCTGCTTGGGTATTCATC
ATAATGATTTTAATCACGCTAATTTTGGATGTGTACCAAAGTATCCCCAG
AGTTCTAATCAATAACAGAGTGCTCTTCATTGGAAGTTGTAAGcacatta
tttttttcagtatattaatttcattttgCAGTAAGgcatagtttcgtttt
aaaagACTAAAATCATACNtgattaaaatttcattttgcagTAAGgcata
gtttcgttttaaaagACTAAAATCATACAGCATAaaatattatatcaaaa
aaCACACATAACTGGTAGTAATCTTAGTAGGAATCCTTCAAATTAGCGAT
CGAGTGCACATGAAATAAACAAAACCATTATGAAAATACAAACAACGAAC
AACAATaatgaaaaaagaagagaaaggaGAAATCATTTATATTTACAATT
GACTGGTGACTCTCAAAAAAAAGGTTCACCTGGCCGATTTCCAGAAACAA
GACATTTTCTTTTTGGCCTAGGTAAAGTAATTTGATTACTACCAGTTTCA
GtactacaaatttgattttaaagggcataaaaattaaactttatCAAGGT
ACAGctagagtctgctaaatgacgcgccttacgcgcccacgcgccctcat
aTTTTTAACGTGCCTTAGGCACCTTACGCGCCCtggtaatttgacgcgcc
ctggtaatttgacgcgccctaaaaatttggagcgccctaaaaatttgacg
cgccttaaaatattgacgcgccctgataatttgacgcgccctaaaatatc
gacgcgccctaaaaaatcGATGCcccctgataatttgacgcgccctgata
atttgacactACCTAAGTAACTGACAGTAATGAGAACAATTGCTTCGACT
TTATTGATTTATCCTCCATATTCAAACGTCAGGTGAGTGTCTCATAAAGA
ATGTTGTTCTTATCCCAGTGTCGTTCTATGAGCGATTGAGGATACAAACC
TTTTTCCCGAGTATTTTATTACCAAGCCATAATTCAtgttttcagtacat
gatttttttctacgttGCTGCAGTAATCACATTATTATTTTAAATCACTC
TTTTCCAAATTGAGATGTACATTTAACAAAGACAGCGACAATGGAAAACG
TTTCAAAAATTCCCAAGTCGAAGATGATTACAAAAAGTTGGGTTCTCTGT
GAAGGGACAAATTTGTGCATTTCcctgtaaattgaatagaaataacGTGT
AGCATGCACAAATTCTATGAAATAGACTAATAAAGTGTACAGCCGATAAA
TGGAGCGGGTCGACTTTAGGCTAATCTCTTAAGAAATGATCATTTTGCTA
ACGCCGACATTCTTTTATATACCAACCATGTATGATTAGACCGGTCCCAT
TATTCCGTCCGTCAAAACCGTCGAAAACTTAAGGTACATCAAAACCCTAG
GGCGTGTCGAAATCTTAGGGCGCATCAAATTTTTAAGGCGTgtcgaaatt
ctagggcgcgtcgaaatcatagggcgcgtcaaatttttaaggcgcgtcga
aatcatagggcgcgttaaattttgaaggcgcgtcaaaattttagggtgcg
tcaaattttgaaggcacatcgaaattctagggcgcgtcaaattttgaagg
cgcgttgaaattctagggcgcgtcaaattttgaaggcgcgtcgaaatcat
agggcgcgtcaaatttaaGGCGCGTTAGAAATATGAGGGCGtgtgggcgc
gtgggcgcgtaaggcgcgtcatttagcagactcgtacAGCTATCATGAAA
AACTGTTGTAAAATTCGTATTGTCAACAGTTATTCCATCCCAATATATCA
ACATCCAAAGTTTCTAATTCTAGACATGTGCATACTGTGGAAGCCATATT
GAAATGAGAAATTTGGAATTTGGAAAAGAGATataatctatctatctatt
atggttgagttacaggaggctctgggagcccattcttgcaactatagatg
ctttgagtaagcatcctgtcagcaccttgaactgactacccaattcctct
cacatggcatggattgacccgggcgaaggttgtgagtgggaatcgaacct
tggtcgcctgtacaggaatcaaggttgatgtccactataccacaaGGAGA
ACTGtagttgaattaaaaaaaattaaaaaacttttttgttatgATTGACC
CAAGGCATTTGGCACTGACATGTTTGGAATACCAAAAGGTTGATAAAATA
TCTGATTCTGTCTTCTAATTTTACCTAATGTGGATTAAGGGTGCAAGAAG
TgtgaaatcaaactttgaaatttcctcatTATTTTATTAAATATGTCTTC
AACAGAGTGCAGATATCTAGAATCTGGATTATTGGATGTTGATATCTTGG
GGTGGAATCACTGTTGACAACTTTGACTTGAATTTTTAAGATTCTTTTCA
TGATGACTTTGCCTGGATTGTATATCATATGTCATGCCGGAATCCCTTCA
AGTGTTAAACTCAAAAATTGTGTTGTACATTCAAAGCAAATTGGCTTTAT
GTTTCAACTCAGTTCAACTTTCTTACTTTTACTTGTTCTGACTTGTCATC
AGTTGTTctcatttaaattttcaagcAATTGGTGGTTTGGTACTGATGGG
AAGTTCAGCAATCATGatggcaaaaaataaaaaccataAAAGTGTGACCA
CAGCAGGgatttttggtttgatttcaatGGGGCTGACCATGATTGAAGCT
GTTTATTATTTGATTCAATGGAAGAGATATGGTGCGAATCCCGAACTCAG
TGAACCATTACTGGATAATGACAATGACAGTGACTGAAGACCACTTGATC
CCTCACAGAAGTTATTGTTAATAGTTGAACATTGTAATTTTTTAGTTgtt
gatattatttttaaaagttattgTATTTTAGTAAAccatttttgataaat
aataaattattttgaaattaaaatttaaacaGATGGTTGACTTGTTTTGC
TGTTCGTATG Coding sequence (CDS) from alignment at sc0000506:37406..44715+ >TCONS_00024619 ID=TCONS_00024619|Name=TCONS_00024619|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0000506:37406..44715+ (Clytia hemisphaerica)
ATGGGAAGAAAGTCAAGTGTTGAAGAAGAAGTCAGTTCTGATGACGAGAC
TTACGTGGAAAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGTCAACT
TCCGATGGCTGAAAACACCAACCGGATTTCTTAAGATTGTCCAATTTGGT
ACTATGTTGATGGGACTCATTTTGGTTGGATCTGTTACCACAGGAGATCG
TGCAAGCATggagttttttgttttcacagTGACTTCTGCTTGGGTATTCA
TCATAATGATTTTAATCACGCTAATTTTGGATGTGTACCAAAGTATCCCC
AGAGTTCTAATCAATAACAGAGTGCTCTTCATTGGAAGTTcAATTGGTGG
TTTGGTACTGATGGGAAGTTCAGCAATCATGatggcaaaaaataaaaacc
ataAAAGTGTGACCACAGCAGGgatttttggtttgatttcaatGGGGCTG
ACCATGATTGAAGCTGTTTATTATTTGATTCAATGGAAGAGATATGGTGC
GAATCCCGAACTCAGTGAACCATTACTGGATAATGACAATGACAGTGACT
GAATGGGAAGAAAGTCAAGTGTTGAAGAAGAAGTCAGTTCTGATGACGAG
ACTTACGTGGAAAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGTCAA
CTTCCGATGGCTGAAAACACCAACCGGATTTCTTAAGATTGTCCAATTTG
GTACTATGTTGATGGGACTCATTTTGGTTGGATCTGTTACCACAGGAGAT
CGTGCAAGCATggagttttttgttttcacagTGACTTCTGCTTGGGTATT
CATCATAATGATTTTAATCACGCTAATTTTGGATGTGTACCAAAGTATCC
CCAGAGTTCTAATCAATAACAGAGTGCTCTTCATTGGAAGTTcAATTGGT
GGTTTGGTACTGATGGGAAGTTCAGCAATCATGatggcaaaaaataaaaa
ccataAAAGTGTGACCACAGCAGGgatttttggtttgatttcaatGGGGC
TGACCATGATTGAAGCTGTTTATTATTTGATTCAATGGAAGAGATATGGT
GCGAATCCCGAACTCAGTGAACCATTACTGGATAATGACAATGACAGTGA
CTGAATGGGAAGAAAGTCAAGTGTTGAAGAAGAAGTCAGTTCTGATGACG
AGACTTACGTGGAAAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGTC
AACTTCCGATGGCTGAAAACACCAACCGGATTTCTTAAGATTGTCCAATT
TGGTACTATGTTGATGGGACTCATTTTGGTTGGATCTGTTACCACAGGAG
ATCGTGCAAGCATggagttttttgttttcacagTGACTTCTGCTTGGGTA
TTCATCATAATGATTTTAATCACGCTAATTTTGGATGTGTACCAAAGTAT
CCCCAGAGTTCTAATCAATAACAGAGTGCTCTTCATTGGAAGTTcAATTG
GTGGTTTGGTACTGATGGGAAGTTCAGCAATCATGatggcaaaaaataaa
aaccataAAAGTGTGACCACAGCAGGgatttttggtttgatttcaatGGG
GCTGACCATGATTGAAGCTGTTTATTATTTGATTCAATGGAAGAGATATG
GTGCGAATCCCGAACTCAGTGAACCATTACTGGATAATGACAATGACAGT
GACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024619-exon-sc0000506-1491911889:37406..37527 | TCONS_00024619-exon-sc0000506-1491911889:37406..37527 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1510915933:37406..37527 | TCONS_00024619-exon-sc0000506-1510915933:37406..37527 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1575043694:37406..37527 | TCONS_00024619-exon-sc0000506-1575043694:37406..37527 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1491911889:40921..40958 | TCONS_00024619-exon-sc0000506-1491911889:40921..40958 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1510915933:40921..40958 | TCONS_00024619-exon-sc0000506-1510915933:40921..40958 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1575043694:40921..40958 | TCONS_00024619-exon-sc0000506-1575043694:40921..40958 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1491911889:41523..41843 | TCONS_00024619-exon-sc0000506-1491911889:41523..41843 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1510915933:41523..41843 | TCONS_00024619-exon-sc0000506-1510915933:41523..41843 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1575043694:41523..41843 | TCONS_00024619-exon-sc0000506-1575043694:41523..41843 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1491911889:44331..44715 | TCONS_00024619-exon-sc0000506-1491911889:44331..44715 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1510915933:44331..44715 | TCONS_00024619-exon-sc0000506-1510915933:44331..44715 | Clytia hemisphaerica | exon |
| TCONS_00024619-exon-sc0000506-1575043694:44331..44715 | TCONS_00024619-exon-sc0000506-1575043694:44331..44715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:37406..44715 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008253 | Marvel |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
|
