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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024618 ID=TCONS_00024618|Name=TCONS_00024618|organism=Clytia hemisphaerica|type=transcript|length=830bp
GTAAAGTAGCTCCAGAGTTCGCGCGCTTTTTCAATGATTGGGCGCTAAAT
GTgatagaaaaattttaaatcaatttgGCATAAAACCTTCAAGTTTTGTT
AAACCCTTGTGTTGGACTTTGGTGTTGAAGAAGAAGTCAGTTCTGATGAC
GAGACTTACGTGGAAAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGT
CAACTTCCGATGGCTGAAAACACCAACCGGATTTCTTAAGATTGTCCAAT
TTGGTACTATGTTGATGGGACTCATTTTGGTTGGATCTGTTACCACAGGA
GATCGTGCAAGCATggagttttttgttttcacagTGACTTCTGCTTGGGT
ATTCATCATAATGATTTTAATCACGCTAATTTTGGATGTGTACCAAAGTA
TCCCCAGAGTTCTAATCAATAACAGAGTGCTCTTCATTGGAAGTTcAATT
GGTGGTTTGGTACTGATGGGAAGTTCAGCAATCATGatggcaaaaaataa
aaaccataAAAGTGTGACCACAGCAGGgatttttggtttgatttcaatGG
GGCTGACCATGATTGAAGCTGTTTATTATTTGATTCAATGGAAGAGATAT
GGTGCGAATCCCGAACTCAGTGAACCATTACTGGATAATGACAATGACAG
TGACTGAAGACCACTTGATCCCTCACAGAAGTTATTGTTAATAGTTGAAC
ATTGTAATTTTTTAGTTgttgatattatttttaaaagttattgTATTTTA
GTAAAccatttttgataaataataaattattttgaaattaaaatttaaac
aGATGGTTGACTTGTTTTGCTGTTCGTATG Run BLAST on NCBI transcript from alignment at sc0000506:37404..44715+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024618 ID=TCONS_00024618|Name=TCONS_00024618|organism=Clytia hemisphaerica|type=transcript|length=7312bp|location=Sequence derived from alignment at sc0000506:37404..44715+ (Clytia hemisphaerica)
GTAAAGTAGCTCCAGAGTTCGCGCGCTTTTTCAATGATTGGGCGCTAAAT
GTgatagaaaaattttaaatcaatttgGCATAAAACCTTCAAGTTTTGTT
AAACCCTTGTGTTGGACTTTGGTGgtaagcacttttttatgtttttatga
tTAGTATTCTCTATCAGCTCAGGCTctgacataattttttgttatattgA
GAAGGTAGTAATTAGTTTTGAAGGTTTAATACCGTGATACTTCGTTATTG
ATTATGTACTTATTATGGTGTACTCATCCAATTCGTTGAATCCGATGATT
GACCATTACTGTTGTACTGTAATGCTCTTCTGAAGTTGAAATAATTAGGA
AGCAGCGGTTCCTCTGGCAGTGTACTGAGGAATTGGTCAAGATGCTGTTT
AAAAGTATGTTTGGTACAGTTTGTgagaggaccctgccgacgacGCACCG
Gattgtccggtgtatttgtccggtggcaaaaagtatcctttcgctacacc
ggacgcaataagtccggtgtcagtccggtgttgcatacagggAATAGACC
TTCTTTCAAAGAGGAcgccctgttgaataattatgtagtccagcagaaaa
acaatgataaaaccatgcataattattacaatatgcatgatacagtaatt
atgcatggctctatcattgcttttatggctggactacataattattcaac
aggacgtcctctttgaaaaaaggtctattttggacaccggacatttatga
aacaaaaaattaagaaacaccggacgcaccggactggtcatgtccggtgt
tttgattgtccggtggaaaaaatatccttctccaacACCGGACATACGAC
TTTCTTAAGTCCAGTGTAGAgattgtggtaaaaaaaattctcattttaca
ccggactttcgcgtgtccggtgtttgtTAAGTCCGGTGCATCGGCAGGGT
CCTTTTGTGAAGTTTCTAAGGGATTTTGGCAGAGCATTGAAGAGCCTTGG
TCCTTCTTGTGAGAGACAACCTCTccagatatttttatgtttgacatttA
TAGCTTTCAGATTGCATTTTCTACCCAGTCTCTGATTTGTGTAAGAATGC
ACGCCTCCTGCCTTGTCATTGACATTGTAGTTGAAATTGGGGGCAATGTC
TTCTAGTATGCACCacgtgaagtcaggtaacttgcatcagatCATCAgta
gtggagggaaacttgcatagccatcaacaAATGATtgaccaaccaaagca
gcaaaatttcaaaacaaattaactacgcagcttcgctcgcagctctactc
taccatttttgttttgatttaactttgtattgtaatgaccagccaggtca
ttcattaaTCATttgtcatttgagggctatgtaagtttgcctccactgat
gcgaAGTTGCTCGACTTCACGGTACATCATTTTGTCAAAAAGCTACCGTC
GTTATGGTTTCAAAATGAAATGGATGGCCCAATAGAGTTTTGCCTAAATC
TGAAAGAGATAATTAGTTTTGTAAGagccatagaccttttttcaaaaagg
ccaccctgttgaataattatgtagtccagcagaaaaacaatgataaaacc
atgcataattattacaatatgcatgatacagtNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctctttcattgttttt
atggctggactacataattattcaacaggatgtcctctttgaaaaaaggt
ctataattatgtagtccagcagaaaaacaatgatgcgtaattattacaat
atgcatgatacagtacaCTATCATTGTTtctatggctggactacataatt
attcaacaggacgtcctctttgaaaaaaggtctattgtctgTAAGAATCA
GGCAGGTGATGGAAGTAACCCTCAAATAATGGGCCATTCCAAGAAACCAC
cattaggcggtcatcgaaaaattgttttattcgcgtcacccgcccgcatc
aaattttccgctgattttccactgcggagatgcggaaaaactctgtcgac
catcgaaaaattgttttgcttgcgTTACCACCCGaccctgagttactggc
gtgattaaaaaaaccccggaatgtttttgaccgcccgtccgtctgcatgc
atttttaacacccgttgtgacgcgaacagagcattttttcgatgaccgcc
ttagAGATCTATCCTTTTGTTTTTGGATTACATGATCTTTTGCCATTGAA
AAACAGACTAttataccgtgagaggtcctaaagccgacaccCCTGcttaa
ttccgaccccccaaataactgttatgaaaaaaaattctatgtttacaaac
attccctctccaagttgaacgataaactattgctagaactctcgaaacaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNtaatgtaattaaaaagtgtgagttgtaaaaataattatc
ttttattctggatcagttgctcatatttaaaacgataacagtgtTGTAAT
aaaacagactaaattgcaaaaagggcgcgaagttgaaaaaatggCGGATG
TGGTAGCaattaatttgaataacaaacatcgaatcaatgaggcggcaact
atcaacaccctctttaccacccataagtccggatgtttatttacggaagg
cccacaatcaagccaagtgccattgtaaagtaataaaaaccaggcttgat
taagtaacgtttcaaaatgagcatgctcgtacacagacctcttttatatt
ttcgtgtgctttggaaaatcaaaacatctcattactttttatgatgctgt
tactactgttgtcatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNctgttactactgttgtcatttatgggcatattgcaataaa
aaaatatgttttgttataagaagcaattattgttatttggatcaattggt
tcagtgtatcaaatctctcagtttagttgacactttggtatctttgttgc
gtcacagcgaacggtttgtttttatttttgtttgtatctttgaaagaccc
catcgaatttaggcagtggtgtcggctttaggacctctcacggtaagGAG
TAATACTAGGCAAtgctcacaaatatcttcattttgtgtCATTTTACTTT
GGAAATATGAAACAGTCAGCCGGTTAATAAttttgttaggaatttgaatt
TCACTAATGTTGACTCATCTTCTCCTGTTAAGATATCACttatattttta
tcatttatatactacagtaattttttttcaaaatttcttcacCAGTCTTC
ACTGTTGTTTTGTTTAGGAAGATAAAATAGACAGATATGGGAAGAAAGTC
AAGTGGTGAGTTGTGACTATTTTGCTGCACTTTTTATTGATAGCTACATA
AAGAAAAGACTAGATATCATAACCAAAAGGCCATGAGGAGTTGATAAAGA
AATATAATAAAGAAGGGGATATAAATTTGTTGAGAGAATCAAATTTTTGG
ATAAGCTGTAAAATCATCTGACGGGTGACTCATTAAAAAAGTATAAGGGT
TTCATGACTATCTTTGTCTAACTGTGATCATAAGAAAATATATTCATATA
TTTTCCTGTTTTTGAGCCATGTAAGGTGACTCCACACTAATCAACCTAAA
ACACATTCAAAAGTGGTTTTTAAAATTGCTTTCAAGAGATGTTTGTACCA
GAGGGAAGATTCCTTTCCTGTATTTTCTTCAAAGAAGAAAACTCACCCAG
TTTACAAGCCATTCCCCGTTTTTAAGGTAACTTCAAAGTGTAATAGTATT
TGTGCATTGTAAGCATAAGCAATTAAAAACAGAATTGAAAGAATTCCAAA
TTTGAGAAGTGCAAAATGGGATCTCATTAACCATAAGTAATTTTTATGAC
AATGGTGAAATTATTTCAGTTGAAGAAGAAGTCAGTTCTGATGACGAGAC
TTACGTGGAAAAGCCAAATGCATTCAAGGAATTGTTGAAGTTTGTCAACT
TCCGATGGCTGAAAACACCAACCGGATTTCTTAAGATTGTCCAATTTGGT
ACTATGTTGATGGGACTCATTTTGGTTGGATCTGTTACCACAGGAGATCG
TGCAAGCATggagttttttgttttcacagTGACTTCTGCTTGGGTATTCA
TCATAATGATTTTAATCACGCTAATTTTGGATGTGTACCAAAGTATCCCC
AGAGTTCTAATCAATAACAGAGTGCTCTTCATTGGAAGTTGTAAGcacat
tatttttttcagtatattaatttcattttgCAGTAAGgcatagtttcgtt
ttaaaagACTAAAATCATACNtgattaaaatttcattttgcagTAAGgca
tagtttcgttttaaaagACTAAAATCATACAGCATAaaatattatatcaa
aaaaCACACATAACTGGTAGTAATCTTAGTAGGAATCCTTCAAATTAGCG
ATCGAGTGCACATGAAATAAACAAAACCATTATGAAAATACAAACAACGA
ACAACAATaatgaaaaaagaagagaaaggaGAAATCATTTATATTTACAA
TTGACTGGTGACTCTCAAAAAAAAGGTTCACCTGGCCGATTTCCAGAAAC
AAGACATTTTCTTTTTGGCCTAGGTAAAGTAATTTGATTACTACCAGTTT
CAGtactacaaatttgattttaaagggcataaaaattaaactttatCAAG
GTACAGctagagtctgctaaatgacgcgccttacgcgcccacgcgccctc
ataTTTTTAACGTGCCTTAGGCACCTTACGCGCCCtggtaatttgacgcg
ccctggtaatttgacgcgccctaaaaatttggagcgccctaaaaatttga
cgcgccttaaaatattgacgcgccctgataatttgacgcgccctaaaata
tcgacgcgccctaaaaaatcGATGCcccctgataatttgacgcgccctga
taatttgacactACCTAAGTAACTGACAGTAATGAGAACAATTGCTTCGA
CTTTATTGATTTATCCTCCATATTCAAACGTCAGGTGAGTGTCTCATAAA
GAATGTTGTTCTTATCCCAGTGTCGTTCTATGAGCGATTGAGGATACAAA
CCTTTTTCCCGAGTATTTTATTACCAAGCCATAATTCAtgttttcagtac
atgatttttttctacgttGCTGCAGTAATCACATTATTATTTTAAATCAC
TCTTTTCCAAATTGAGATGTACATTTAACAAAGACAGCGACAATGGAAAA
CGTTTCAAAAATTCCCAAGTCGAAGATGATTACAAAAAGTTGGGTTCTCT
GTGAAGGGACAAATTTGTGCATTTCcctgtaaattgaatagaaataacGT
GTAGCATGCACAAATTCTATGAAATAGACTAATAAAGTGTACAGCCGATA
AATGGAGCGGGTCGACTTTAGGCTAATCTCTTAAGAAATGATCATTTTGC
TAACGCCGACATTCTTTTATATACCAACCATGTATGATTAGACCGGTCCC
ATTATTCCGTCCGTCAAAACCGTCGAAAACTTAAGGTACATCAAAACCCT
AGGGCGTGTCGAAATCTTAGGGCGCATCAAATTTTTAAGGCGTgtcgaaa
ttctagggcgcgtcgaaatcatagggcgcgtcaaatttttaaggcgcgtc
gaaatcatagggcgcgttaaattttgaaggcgcgtcaaaattttagggtg
cgtcaaattttgaaggcacatcgaaattctagggcgcgtcaaattttgaa
ggcgcgttgaaattctagggcgcgtcaaattttgaaggcgcgtcgaaatc
atagggcgcgtcaaatttaaGGCGCGTTAGAAATATGAGGGCGtgtgggc
gcgtgggcgcgtaaggcgcgtcatttagcagactcgtacAGCTATCATGA
AAAACTGTTGTAAAATTCGTATTGTCAACAGTTATTCCATCCCAATATAT
CAACATCCAAAGTTTCTAATTCTAGACATGTGCATACTGTGGAAGCCATA
TTGAAATGAGAAATTTGGAATTTGGAAAAGAGATataatctatctatcta
ttatggttgagttacaggaggctctgggagcccattcttgcaactataga
tgctttgagtaagcatcctgtcagcaccttgaactgactacccaattcct
ctcacatggcatggattgacccgggcgaaggttgtgagtgggaatcgaac
cttggtcgcctgtacaggaatcaaggttgatgtccactataccacaaGGA
GAACTGtagttgaattaaaaaaaattaaaaaacttttttgttatgATTGA
CCCAAGGCATTTGGCACTGACATGTTTGGAATACCAAAAGGTTGATAAAA
TATCTGATTCTGTCTTCTAATTTTACCTAATGTGGATTAAGGGTGCAAGA
AGTgtgaaatcaaactttgaaatttcctcatTATTTTATTAAATATGTCT
TCAACAGAGTGCAGATATCTAGAATCTGGATTATTGGATGTTGATATCTT
GGGGTGGAATCACTGTTGACAACTTTGACTTGAATTTTTAAGATTCTTTT
CATGATGACTTTGCCTGGATTGTATATCATATGTCATGCCGGAATCCCTT
CAAGTGTTAAACTCAAAAATTGTGTTGTACATTCAAAGCAAATTGGCTTT
ATGTTTCAACTCAGTTCAACTTTCTTACTTTTACTTGTTCTGACTTGTCA
TCAGTTGTTctcatttaaattttcaagcAATTGGTGGTTTGGTACTGATG
GGAAGTTCAGCAATCATGatggcaaaaaataaaaaccataAAAGTGTGAC
CACAGCAGGgatttttggtttgatttcaatGGGGCTGACCATGATTGAAG
CTGTTTATTATTTGATTCAATGGAAGAGATATGGTGCGAATCCCGAACTC
AGTGAACCATTACTGGATAATGACAATGACAGTGACTGAAGACCACTTGA
TCCCTCACAGAAGTTATTGTTAATAGTTGAACATTGTAATTTTTTAGTTg
ttgatattatttttaaaagttattgTATTTTAGTAAAccatttttgataa
ataataaattattttgaaattaaaatttaaacaGATGGTTGACTTGTTTT
GCTGTTCGTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024618-exon-sc0000506-1491911889:37404..37527 | TCONS_00024618-exon-sc0000506-1491911889:37404..37527 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1510915933:37404..37527 | TCONS_00024618-exon-sc0000506-1510915933:37404..37527 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1575043694:37404..37527 | TCONS_00024618-exon-sc0000506-1575043694:37404..37527 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1491911889:41523..41843 | TCONS_00024618-exon-sc0000506-1491911889:41523..41843 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1510915933:41523..41843 | TCONS_00024618-exon-sc0000506-1510915933:41523..41843 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1575043694:41523..41843 | TCONS_00024618-exon-sc0000506-1575043694:41523..41843 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1491911889:44331..44715 | TCONS_00024618-exon-sc0000506-1491911889:44331..44715 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1510915933:44331..44715 | TCONS_00024618-exon-sc0000506-1510915933:44331..44715 | Clytia hemisphaerica | exon |
| TCONS_00024618-exon-sc0000506-1575043694:44331..44715 | TCONS_00024618-exon-sc0000506-1575043694:44331..44715 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:37404..44715 + |
Blast
The following BLAST results are available for this feature:
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