|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024613 ID=TCONS_00024613|Name=TCONS_00024613|organism=Clytia hemisphaerica|type=transcript|length=1248bp
gatcttttggcctttttcgacgaattttcttcttttcattgaaattcaac
cttcctttatataacaaaaggtcatttagacagctaattatcatttttaa
tgactgaaccgaaaatactgatgtatcatgtaattatgcttctgtttaat
ttgataagtcgatttttaacgtttttgagcactttccgaaagtaactttt
ttattcaattgagcNNAGTTTCAAAGAGAgattttgtggcgcacccggta
tctgtaaatttgtttttctaaataaaaaattatgtacaAAACTAAATGAA
AAACTGCTAATTGACATCGGAGGAGTAGACAcccaaaaaagtctaaaaag
agGGGGTCAATAATAAACATGGGAGGCAATAAACACCCAGAGGATTTGCG
AAGATTTGGTCAAAGCCTTGGGGTCCactaaaaattctcaaaacttaagA
GAACTCGAATTTATGTCATGACCCCAGAACAACTATCTTAATacttaaaa
tattttgttaataGAATTGCTCAATACTGTCTCGACCATTTGTAACATGA
ACCTACTTCAAGTATGCGATATCGAGTGTGTTCGTCTGTTGCTCGTTTTT
TTAAGATGGTCCTTACCGTGTAATAATTACAATTTATCGTAACCATAATG
TACGAAAATTATCCATCATTGCGGAATTTGGAAATAAtctagaatttcaa
aaagtcatttTGAGTTCCTGTATCAAGTCGTTTTTCACAATAAGCTTTTT
GGTTCACTAGAGACTGTGAGAACCATTCTATACCAACGTTTTATGAGTGT
AAGGATTTAAGAAGCTGTAACACTGTTCGTTCGAGCAGATCGATTTCATC
AGAGTACTGGTCTAATACCACTGCACGCAGAATTAGGTTAAGGTCATCCC
GACTATAGATAAAACCAGAGATCCAATTGATTTCAAGAACATACTTTCAT
TTTCCAATTCGTATGTaataatacacgggtttcgaattaaatttttgctt
agctttagctttgatcccatgtaaatttgcacgaagaaaatcaagtaaac
agaacgaaaattggccgttGTCACGTGATGAACTGTGGAAAGCCACTATG
CACATATTGTGCATTTTCAAACGAAATACGAAAACAGACAAAAGAACGGG
GTCTTTCAAACTGCCTCTGATCGAGGTGGGTTCTCCCTGTTTGGGGAGAT
TTATTGTTTGACACCCAAGTATACATGTAAACTGACGCTTATGAAGCG Run BLAST on NCBI protein sequence of TCONS_00024613-protein >TCONS_00024613-protein ID=TCONS_00024613-protein|Name=TCONS_00024613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
LHKRQFTCILGCQTINLPKQGEPTSIRGSLKDPVLLSVFVFRLKMHNMCI
VAFHSSSRDNGQFSFCLLDFLRANLHGIKAKAKQKFNSKPVYYYIRIGK Run BLAST on NCBI transcript from alignment at sc0000504:105850..107097 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024613 ID=TCONS_00024613|Name=TCONS_00024613|organism=Clytia hemisphaerica|type=transcript|length=1248bp|location=Sequence derived from alignment at sc0000504:105850..107097 (Clytia hemisphaerica)
CGCTTCATAAGCGTCAGTTTACATGTATACTTGGGTGTCAAACAATAAAT
CTCCCCAAACAGGGAGAACCCACCTCGATCAGAGGCAGTTTGAAAGACCC
CGTTCTTTTGTCTGTTTTCGTATTTCGTTTGAAAATGCACAATATGTGCA
TAGTGGCTTTCCACAGTTCATCACGTGACaacggccaattttcgttctgt
ttacttgattttcttcgtgcaaatttacatgggatcaaagctaaagctaa
gcaaaaatttaattcgaaacccgtgtattattACATACGAATTGGAAAAT
GAAAGTATGTTCTTGAAATCAATTGGATCTCTGGTTTTATCTATAGTCGG
GATGACCTTAACCTAATTCTGCGTGCAGTGGTATTAGACCAGTACTCTGA
TGAAATCGATCTGCTCGAACGAACAGTGTTACAGCTTCTTAAATCCTTAC
ACTCATAAAACGTTGGTATAGAATGGTTCTCACAGTCTCTAGTGAACCAA
AAAGCTTATTGTGAAAAACGACTTGATACAGGAACTCAaaatgacttttt
gaaattctagaTTATTTCCAAATTCCGCAATGATGGATAATTTTCGTACA
TTATGGTTACGATAAATTGTAATTATTACACGGTAAGGACCATCTTAAAA
AAACGAGCAACAGACGAACACACTCGATATCGCATACTTGAAGTAGGTTC
ATGTTACAAATGGTCGAGACAGTATTGAGCAATTCtattaacaaaatatt
ttaagtATTAAGATAGTTGTTCTGGGGTCATGACATAAATTCGAGTTCTc
ttaagttttgagaatttttagtGGACCCCAAGGCTTTGACCAAATCTTCG
CAAATCCTCTGGGTGTTTATTGCCTCCCATGTTTATTATTGACCCCctct
ttttagacttttttgggTGTCTACTCCTCCGATGTCAATTAGCAGTTTTT
CATTTAGTTTtgtacataattttttatttagaaaaacaaatttacagata
ccgggtgcgccacaaaatcTCTCTTTGAAACTNNgctcaattgaataaaa
aagttactttcggaaagtgctcaaaaacgttaaaaatcgacttatcaaat
taaacagaagcataattacatgatacatcagtattttcggttcagtcatt
aaaaatgataattagctgtctaaatgaccttttgttatataaaggaaggt
tgaatttcaatgaaaagaagaaaattcgtcgaaaaaggccaaaagatc Coding sequence (CDS) from alignment at sc0000504:105850..107097 >TCONS_00024613 ID=TCONS_00024613|Name=TCONS_00024613|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000504:105850..107097 (Clytia hemisphaerica)
CTTCATAAGCGTCAGTTTACATGTATACTTGGGTGTCAAACAATAAATCT
CCCCAAACAGGGAGAACCCACCTCGATCAGAGGCAGTTTGAAAGACCCCG
TTCTTTTGTCTGTTTTCGTATTTCGTTTGAAAATGCACAATATGTGCATA
GTGGCTTTCCACAGTTCATCACGTGACaacggccaattttcgttctgttt
acttgattttcttcgtgcaaatttacatgggatcaaagctaaagctaagc
aaaaatttaattcgaaacccgtgtattattACATACGAATTGGAAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024613-exon-sc0000504-1491911889:105850..107097 | TCONS_00024613-exon-sc0000504-1491911889:105850..107097 | Clytia hemisphaerica | exon |
| TCONS_00024613-exon-sc0000504-1510915933:105850..107097 | TCONS_00024613-exon-sc0000504-1510915933:105850..107097 | Clytia hemisphaerica | exon |
| TCONS_00024613-exon-sc0000504-1575043694:105850..107097 | TCONS_00024613-exon-sc0000504-1575043694:105850..107097 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000504 | supercontig | sc0000504:105850..107097 . |
Blast
The following BLAST results are available for this feature:
|
