TCONS_00024475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024475
Unique NameTCONS_00024475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1058

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024475 ID=TCONS_00024475|Name=TCONS_00024475|organism=Clytia hemisphaerica|type=transcript|length=1058bp
CAAACCTAAGTTTAGAACTGTAAACCTTGGTTTGCAGTCTTTTTTGTGCA
TATTGGCTTCCATAAACTACTGCGTAATCTCCATAATCGGGACGGTGCCC
CAGACATGCGGGTAGAAGTAGCACCGGAAACACCGGAACATGAAAATATT
CCATGAAACTAAAGTGCCGAACGAGCTACATCGTTCATTTTTCAAATCGA
AAGTAATCAAGCAACACGTGTGTAGGCCAGATATTTCTTGTGGCTCATCT
TCTTTgaccaaaaaacaacaaacataAATACAATGACTGAAAACAAAGTT
GAAGAAACATCTGATCTTGACAAGAAAATTATCAGACAAGTTGAGTATTA
TTTTGGGGATACTAATTTACCGAAAGATAAATTCATGAAAGAGAAAGTCA
AAGAAGATGATGGCTGGATCTCTGTAGAATGTTTGACAACATTTAACCGC
TTGAAGCAACTCTCTACAGACTTTGAAGAAATCTGCAAGGCATTGAAAAA
GTCAGACTCTGGATTACTCGAGATTAATGAAACTGATTTCAAAATCAGGA
GGTCGAAAGACAAACCAGTCCCTGACTTGGACGATCCAATGGTAGTCAAA
ACAAAGAAGATGAAAACTCTATATATGaaaGGATTTCCAAAGGATTATAC
AATGGATCAAATCTCTGACTTTTTACGAGAACATGGTGCAGAGTCTGTGT
TCATAAAGATGCGAAAGAGAGATGACTTCGAATTCAAGGGATCTATCTTT
ACTGAGGTGCAGACGCAAGAACAAGCTGATGCCTTTCTGGAGAAGAAAGA
TCTGAAGATTGGAGAAGAAGAAGTTATGCAGATAATGAAAAGAGAGGATT
ACTTCGAAATGAAAAGTCAAGAAAGACGAGGCAAAAATGCTGAAGAACAA
CAGTACGTATCAAACACTatgaaatttttagaaattgtcTTTACTTTAGT
CAAGTCCCAGATCGACCTAATCGGCAATTCAGGGGAATTGTATTTCTGAA
AAATTACTAATTTATTTTCCCTGAGAAGTTTTTCCTTTGAAAGTTTCCCA
TAGTTCGG
Run BLAST on NCBI

transcript from alignment at sc0000499:221138..231491-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024475 ID=TCONS_00024475|Name=TCONS_00024475|organism=Clytia hemisphaerica|type=transcript|length=10354bp|location=Sequence derived from alignment at sc0000499:221138..231491- (Clytia hemisphaerica)
CAAACCTAAGTTTAGAACTGTAAACCTTGGTTTGCAGTCTTTTTTGTGCA
TATTGGCTTCCATAAACTACTGCGTAATCTCCATAATCGGGACGGTGCCC
CAGACATGCGGGTAGAAGTAGCACCGGAAACACCGGAACATGAAAATATT
CCATGAAACTAAAGTGCCGAACGAGCTACATCGTTCATTTTTCAAATCGA
AAGTAATCAAGCAACACGTGTGTAGGCCAGATATTTCTTGTGGCTCATCT
TCTTTGACCAAAAAACAACAAACATAAATACAATGACTGAAAACAAAGTT
GAAGAAACATCTGATCTTGACAAGAAAATTATCAGACAAGTTGAGGTATC
ATAATTATTCATTTATATACTTAAACCCCGGAACCTCCGAGCCGAAAATC
GAAAATCGACCCTTTGAGAGACTTTTTCCTAAATTTTGGTCCATTTTTTC
CAAATTTTGGTTTGATTTTCACCAAATTTTGGTCAAAATTTTTGGAAATC
GTGACCCTTTGAGAGAAAATTTTTTGATTTTCGTCATTTTGGGACCCTAA
GACTAACTTTTGAATTTGTACCCCTTTGCCAGTGGATTTCGTGTAACTAA
CGCCGAAGTTCTTCGGGGTACAACTGAAACGTTTTTGGCGCATTGGCGTA
AGGGTAATTACAAAGATTGTTTGATTTTCAGTTGGTGTAAAGTAATAATT
CCAGCTCGGCGTGAATGACTCCATAATCCATCGATTTTTAGCTTCCATTT
GGCTAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCG
TATAGTAATAATTCCAGCTCGGCGTGAATGACTCCATAATCCATCGATTT
TTAGCTTCCATTTGGCTAAATTTGCTTTCGCTCGCTTGCGCTCGTGTCAA
TTTATTAATTATGTTGGCCCATGCGCCTCTTTTCCCATCTTGCACCCTTA
TTGAAAAATTGAATGTTGGTACAAAAGAAATTTTGCTTGGCGTGAGGCTT
GCTGCACGGATAAATATCTTCGACGCAAGATTTCGTGGAATCCATACTGG
CCCCTTTGAGCAGTGCGCCACCACAAACCGCCATATAAACAAAATTCAAC
ATTCTCCGTCTAAAGCGTTCACTTCCACAATAATTTATGTAAATTGCAAT
TTCGGTCAGTCCACAGTCGGCTTCAACATATACACATGTTTTTATTTACG
TGACCGAAGTGTCTACTAAAACAATCTGGGGGTAAGCGGCAAAGCAACTC
AGCAAATTAAGTAAAGAAATATCTTTTGGCATTGGCGATCAAATATAATA
TATATTATTATTTCCTTAATTCAAAAATCAAAAATTCATTTTTCATTCAC
GAAAAATAGAAATAAAAAAGTAATGAATTAATATTATACTAAGACGCCCT
TTTTTACTCTCGTTTTAATTTCCGATCTCGGAACGTGCAAAACGCCCGTC
CGCCCAATATCCACNTTTCTAGGGCTTCGTTTATCGCGCAATTTTTGCGT
CACACAAACTTTCTCGGCCGCTCGTAATAATTATGCATTGCCAAATTTGG
TTCTCCATTGTCAAGTCAGGAAATCAAAATTGATGATGATGATTTCNACC
CAATCAGCTTAAATTCACTTTAATTGTCCTTTGACTTTCAAAAAATAGTA
TTTAAAAATTATGAATTTATAATAATTACAAAAAACAAAGTTTGATACTT
CATCAGTGAAATATTCAATAAATTCCTAGTTTCAATTTTTAGTGCAGGGG
GGGGTCATGCAGTTATTATATAAACACTATGACAATTACTACCGTGGTGG
TATATAAACCAAAATTTGGGAAAACAGTTACTCCACCAGTGGACTAACTG
CAACATGGATGGTGCCTAAGCCCAAAATTGTCGATTTTGGTAGGATAAGG
TGTACTAAGTGAGCACATTTTTCAATTTTACNGCCCCCCCCCCCCCAGGA
CTTAAACTAAAAGCTTTGCTGCAGGGAAAATGTAGCTAACTTTTTTTGTT
TTTATAGCTAGACAGACACAAAATTTCAGCGTTATCCGTTGCAGTGTGCT
CCCTCTAAAAATTTGTAACCGTCAAACCTCAATTTTGCACAGACACCCCT
GAGAATAAACTATTGGCTTCCAATAGTTTCCAGTTCCAAAATTCAATCGA
ACCTAATCGAACTCTTGTATATTGCTCATTCCGACATCANAAAATTCCGG
AAGTAAAAAAATTCAAAACATTTTTTTCAAAAGTCAGAAAAAATCACAAA
ATTTTTTCTTCAATCAAGGCATGAAAGATACTCAGAGATACTTTAACAAA
CTTGGAAAATAATTGAGATATATAACTCTTGAACGGTCGTTAATAAGACG
AACCCAGTAAAATGGTATCAAAAATGAGGAATTCATTGAAAAAATTGCCA
AATTTGGCACTTTTGGGGGTGGTATACANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTATTTCTGCCTGTCTTCTCTGAGGCTTTCTTCTGACCCCCTGGT
GACTTTTCTAACTTATTTACTATGTTTTCTGACTATTTTAAAGTGTTTTA
ACTTACCTTGAAACATCCACCAAATGAAAGAGTTTCTGATCAGAAACCCA
GCGCGCTATCCGTTGAGCCACACTCGCATAGCAGAATACAAAATTTGGAA
ATACTTATAGAATGACAAAAAAGACGGGTGTAATGTTATTATAATGGGTA
AAATTGCCCCTTTTTTAACCTGACTGAAATTCGAGCCGTTACTAGCAACC
CTGGCCTAAGCAATTCCAAACAACAAAACCCCCGGAAAATTAAAAATGTC
GGAATGATCAATATACAAGAGTTTTTTCCTAATCGAACACTCACAATTTT
TGAAGCAATAGCAGTTCGATTAGTTCGGTCAGTAAAAACTTCGATTAGTT
CGATGATATTAAATCCTCATATCTTCCCTCGCTTGCAAAAAATTTATCCT
GGCACGCGATTGCCATTTCGACAATTCCCGGACTTAACAGCTTAACGTTT
AAATTGTACCCAGACATATTTGTCTATCCGAAATAAATTCCTTAGCCCCT
CTGTCGCAATTTCGCGTGCGGCCGAGTGGCGGAATACTACGCCCAAACAA
ACCACTTAAACTGGCCCTAAAAGTATATACAGGAAAAGTGTGTAATCCGT
CATTGGAAGTAATTTCCCGATTTATATACATTCCGAATTTGGCTTAAAAA
AGAAGCTAATATACGGTGGCGACACATGCGTTTGGTTTGGGAACGCAAAA
CACGAACGCGAACCACCAATGTCTAAACTTTTTAATATATCTCCAGAACT
AACAGATTTTTTGAAGTTCTGTAAAAAGGTCCAAGCTCCTGAATAGTTTC
ACTATGTTCTGTGGAAAAATCATAACCATCAGTCAAATACTCGTTCATCT
ATTTAAGATTGAAGACAAAAATTTGCAAAGAAAAATAAACCTTGAGCACA
AAAAATGCTTTTTTAAACACTTTTTTCCACCGAAAAACAATAACTTTTTT
TAGACTTACCTTCCCCAAACATTGAAGAAGTATTCACTGCAATGCCAAAG
AGCATAAGAAACTTAAAAAACACTTCAACTGAAAAATTTAAAAATGCCTT
TGACACTCACTTAAAGTCGATCCCGGACNCAAACAAAACGCTTCAACTGA
AAAATATAAAAATGCCCTTGACACTCACTTGAAGTCAATCCCAGATGAAC
CCCAAATTTATGGATATACTGGGTGCAGGAGAGCTAATTCAAACTCAATA
CTTGACATGAAAAATATCTGCTGAGATTCTTTTTCCCTCGACAGATTGAT
CAAACAGGCGTGGTTCACCAAGAACCTTACCTGAGCACTTTGCTCGAACA
CCTACACAAGTAACACAAGTAAGAAGCCTCTACTAATTATAGTAGATGAG
ATAAGATAAGAGAAAACCTTAAAATCAACCAGAATTTACAACCTTTTCTT
CCAAAGGAAACGATGTGCTTTCTCGCCGCCATCTTGTTTTAGAATGAGAA
TCATTTTCGGTTCCAGTTCCTGCGGTCTTTTTTTCATCCAATCAGATCGC
GCGATTTCACTTTCGCTTTCTCTAGTCCAATAAGAATACGGGAATTGAGT
CATGTGACATCTATATTGGGAAACCCGCGCAGATATGAGCAAGGGAACCA
TGTTGGCCATCCCTACTGAAAATTTCAGATCAAAAGAAACAAGGAATCAA
TTCCTGTAACTCAAAGAAAATTGGAAAAAGCTGGTTTTTGACTGTTTCTG
ATCCTAAAGTGCTAGTTTTTGGCAATTCTTTGCCAAATCGATTTTCGCAT
TTCGCCATTTTAACCTTTTAGGCAAACGCACGTGGCGGAGCAGCACAAAC
TTGTCGAACAAAATTGGTTTATCGAACTGATCGAAGCGAAACCCATTGAT
CGAACTTAACCGTACACTCACAATATCTTTTAAAAATCTTAGAGTTCAAT
TAATTTTTTTAATCAAACTTTAACCGTTCGATGGAGTTCGATTAGTTCGA
TTGTTCGATTGGTTCGACAAGTTCAATTGATTGGGTCTGGACACACCGGA
GCCCAACTTGTCATTACAGCCGAGCGAAGCAAGGTTTGACGGTTACAAAT
TTTTAGAGGGAGCACACTGCAACAGAGAGCCCTGAAATTTTGCACAGACA
CCCTTGATTTAGAATAAACTATTGGCTTCCAATAGTTTCCAGTTCCAAAC
ATAACCACTCTCCCCCACAGGAGCCCAACTTGTCATTTCGGCCGAAGCAG
GCCGAAATGAGGTTTGATAGTTACAAATTTTTAGAGGGAGCACACTGTGA
CGGAGAGCCCTGAAACTTTGCACAGACACCCTTGAGAATAAACTCTATTG
GCTTCCAATAATTTCCAGTTCCAAATATAACTGCTCTCCCCCACATGAGC
CAAACTTGTCCTTTCGGCCGAAATGAGGTTTGACGGTTACAAATTTTTAG
AGGGAGCACACTGCGACGGAGAGCCCTGAAATTTTGCACTGACACCCTTG
AAAATTCACTAAAACTCCAAAACGAATATCAAACAAATATCAAACGTCAA
ACGTAGAATATCAAACCAACTTCAACTTAATTCCTTTTTGACCTTTTTGA
TTTTTTCAATTTTTGATTATTTCGATCATATCAGTTAGGGTCAGGGTTGG
AGCTCAAAACATTGCGTCATTATTTAGATGATCTGGAATGGACGAGCACC
AACTTAAAAGGGAAATGGTCAAGGGCACTATAATGTAGTTTCTAACCTGA
GGTGTAATTTGATATTTTCTTTTGCGAGAACTCTAAAAAAAAAGTGCAAA
AAATAATGTCATAATAACTAAAAATGGAAAAGAATCCGCTCCTTTGAGTT
TGATTTCCAGCAAGCATACCCCCTGAAATTCACTATTGGGTGTCAAAAGA
TCTTTATTTACTTGCACGCAATTTTGACACACATATTTTCATGCGTTCGT
AGTTCTTTTCCCGTCTTTACAGACTGCAATCATGTAGGGTGGTACCCATG
TACAAATGTAATGAGCTAGTCGATTACAGTTCGAGCAGGTTAGACTTTCT
TCGTTTTGGTCGTCAGTACAGGATGAAGGACTACAAAGCGGATTTGGAAT
ATTTCTATTCCTCGTGGACGTCATGATGGATGGTTATGGTGATGTTTAAG
TTGAATTGGTTGATGTTTTTGATGAATTTGAGTGGGTCTAGTAGCGATTT
TTCATGATTTTTTTCAGAAAAACTCAGAAAATTTTCAGAAGTTTTGATTA
CTGTAAATCATCACAAAAATAGGATTTTTTGTTTTTTGCTTATTTCATTG
AAATTTCAAAACTTTGGTGGGATACATCTTTGGTAAAGTTTGAATAGAAG
TTAATTAAGCAATCTTGAGAAGTTCAAGTTTTAGTTTTAGTGGCCTCATC
AATGATGACGTCATGATTCGTAATCAGTTTTGTAGTTTTCGAAAAAATGA
GCAAAAAAACAATTAGGTTACACATCAGGTTATAAACTTACTACATCATA
GTACCCTTCATATTCAGTCATTTGTTGTTTGGTCAATTTCTGTCCACTAA
TGTGATCTAACTAATCTAAATGGTAAATTTAAGCATAGTCTGTATAGAAA
ACCCTGGTCTGGAAGCTTATTGTCTAAACTTTTTATTAGCTTTTTCCTTT
GTTAATATCAAAAGATAAAGATAAATATCGATTTGCTCAGTTTTTGATCA
CATTTCCAAATACTCCTCTTGGGATTGGTTTAAAAATTTAATCATGTGAT
CAAAAAGTGAGCAAAATTAATTAATTTTTCAATGATAGTTCAGGTAAAAA
ACAATAGAAAGAAACAAAAGACTTCCAGACCGGGGTTTTTATACGGACTA
TGATTTAAGACATGTCATAACTTAACTGAGAGAGAAATTCCTTTTCAAAT
TACAGATTACTGCATGTCTGTCGTCTCTATCTAACATCAAAAAGAGAATC
AAGAATCTAAAATTTTTGCGTGGACAAAATTTTGTGAATCGTCCTCATTT
TCACAAGTTTTCTTTCATCTTTTCCTAAGAAGAAAGGGAGGCCAATTTTG
GGAATTTTAAATTTTTTTTGTTAGGACTAATTTTTACAAAAAAACAAAAA
ATTTGCAAAAATTAATCCACATAAACTTTAATCCACTTAAGGTAGATTGT
CATTTTACGAGTAAGGCTCACATATTTCCAAAGGGAACTCAAGACATGAA
AATCTGGACATTGGTTTTGGTGTTATGAAACATGGAAAAGTATTTCTTAG
CATTGAGTGAACTTCTCCGAAATTCATATGTCTGGTGAAAATTTATTTTC
CACTTATAAACGTCCACAAGGTATACTCCACTCCCCCAAAATGTCTAATT
GACACTATTTGTGGCAAGTTTGAGTTTGGATGTCTCCCCTGGATGAACTT
AAAACAGAATGATAAAGTGCTTTTCCAGGCTTTCCAAAGCTTTTAAAATT
ATTAAAAAACATATTATACAAATCTCTCAATCCGAAAAAAGGAAAACATA
AACTGTCACCAGTAATATGATAAAAATGGTAAGTTAAGCTTAGATAAAAA
AATTAAACTTCCCCTGGGAAATTACCCTTCAACAATGTGTATTAAATTAT
CTTGCTATGTTATCAGTACAATAATTTTGTCTTATTATCAATCTTAATTT
CTTATCTTACTAGTATTATTTTGGGGATACTAATTTACCGAAAGATAAAT
TCATGAAAGAGAAAGTCAAAGAAGATGATGGCTGTATCCTTTTCCACCTG
AAGTTAAATTAATTTTAATTAATTTAAAATTTTATTAAGATTTATCAGAT
TTTGAATCAACTCTGTTTCTGATATATTTGTCTGAAAATTCACAAAAGCG
ATGTGCACTTACTTTTTTTTATTTTTACACTGGAGTTAAAATCGTTTTAA
TATTCGTGTATTTATTATTTATTTTCATTAAAAAGTATCTTCTTTAACTT
CATCACTCCGTCACAAAACAGGGATCTCTGTAGAATGTTTGACAACATTT
AACCGCTTGAAGGTAAAGAATCATTATTTTTTCTTGTATTTGATGGTCAA
ACACAACAGATAATTCTATCTATTATTGGAACTAATTTTTTCGTCAAAAT
CGCGAAAATTTGATCCCGCGAAAAATTTAGAGAGTTGAAAACCGCGAAAT
ACAATTTTTTCCAATTTCATCAAAAAATTTGAAAAATTCCTAGGAAAATG
AAAGAAATTTGTCCAAAAAAGGGCAAAACCGCGAAAATTAAAACCCGCAA
AAATTCCTGAATGGAAAAAACTTAGAAAAATTAAAACCCGCGAAATGCAA
TTTTTCAGATATTTTTTTTCGACCGCGAAAATTAGTTCCCGCAAAAATTA
GTTCCAATAAGGTATGTAAAGAAGAAATCGCTTGAAAAGTTGATATGTTG
AGTTCATCTTGTTTTAATGTTTATCTAACAAATGTCCTCTAGTAATCAGT
TAAGATGATTTCTGTGTTTCACTTGACCTTCTTCTATTTTAGCAACTCTC
TACAGACTTTGAAGAAATCTGCAAGGCATTGAAAAAGTCAGACTCTGGAT
TACTCGAGGTAACTCTTTTGATTTGAGAACTTCTGCATTTGAAAGTCTTT
TCACTTTAAGTGTGCACTAATTTTTGCAAATGAAGTTTTTTTTCTCAAAA
TTAAAGTGCTCTGAATTGTCTTTTCAACAGAAAATAATTTATTAGATTTA
AAGCATCGATCAAAAAATGGCAAGCAAACCAAGAGTTAGTGCACACTAAA
CAGGCGGACTTTATTCAATTGTAATAATATTTATCCATCCATTTACTCTA
ACTAACAATAGGCAAAGTATATTCTTGACAAGTTGAGATATCAGATAACT
ACACTACTTGCTTCTGCTTGCTAAATTCCTTCAATGTATTATTAGGATTG
TTGTCTTTGGACTAAAAAAAAACCCTATTAACTAATTAAGTCAATTTTTA
CTCAACTGTTAGATTAATGAAACTGATTTCAAAATCAGGAGGTCGAAAGA
CAAACCAGTCCCTGACTTGGACGATCCAATGGTAGTCAAAACAAAGAAGA
TGAAAACTCTATATATGGTAAGATTCAGATAAAAAGTGCCTTTAGCCTCC
CTTCAGGGATTCAGCCCCCCCCCACCAAATAAACCAGACGTTAGAGGGGA
GCTGAGATTTAGCGTTAATAAAGGTAGCAAGCCTTGATAGGAACCTAAAT
CATTGGGGGTACCATGATTCCTTTCCTCCACCCTGCTTCAGCTTTATACC
TCTGTTTTTCAAATGGAGTAAATGAAGGTGTTTAACGCTCTTATTTTTTC
AATTTCAGAAAGGATTTCCAAAGGATTATACAATGGATCAAATCTCTGAC
TTTTTACGAGAACATGGTGCAGAGGTTATAAAACTTATTCCAAATCAACT
ATTTAGCTTTATCTGTTTTTTAAAAAACATTCATTTTAAGGACATTTGTT
TCAAATCAATTAAAAATATCTTTTAAAATCTTTGCCTAGCATCTAATGAG
TAAATCGATTTAATGAAATTTCTTACAATTTCTTATTGTCCATATATTTT
TATTCCAACATTTCTTCCTTTACTTGCAGTCTGTGTTCATAAAGATGCGA
AAGAGAGATGACTTCGAATTCAAGGGATCTATCTTTACTGAGGTGCAGAC
GCAAGAACAAGCTGATGCCTTTCTGGAGAAGAAAGATCTGAAGATTGGAG
AAGAAGAAGTTATGCAGATAATGAAAAGGTATACTCCTCTCCTCGAAAGC
CCCCTTCCTCCGGTAAATTGGAGCTGAGTTGTTTCATGAAGATTCTTGAA
TTGAAAATCTTTAGTAATAAAATGTTATACAACAGGCTTCAAAATTTTAT
TAATGTAATTTTGGTCACATTAACTTTTTAAAACGTCTTGTTTTCTTCGT
TAACGTGGGAATGAAAATTTTACTGACAAATTTCAAAGTTTTGAACTTCC
TCTGGTCTATTTAATATTTCCNAATCAACTATTTAGCTTTATCTGTTTTT
TAAAAAACATTCATTTTAAGGACATTTGTTTCAAATCAATTAAAAATATC
TTTTAAAATCTTTGCCTAGCATCTAATGAGTAAATCGATTTAATGAAATT
TCTTACAATTTCTTATTGTCCATATATTTTTATTCCAACATTTCTTCCTT
TACTTGCAGTCTGTGTTCATAAAGATGCGAAAGAGAGATGACTTCGAATT
CAAGGGATCTGTCTTTACTGAGTTGCAGACGCAAGAACAAGCTGATGCCT
TTCTGGAAAAGAAAGATCTGAAGATTGGAGAGGAAGAAGTTATGCAGATA
ATAAAAAGGTATATCCTCTCCTCGAAAGCCCCCTTCCTCCGGTAAATTGG
AGCTAGAGTTGTTTCATGAAGATTCTTGAATTGAAAATTTTTAGTAATAA
AAATGTTATACAACAGGCTTCAAAATTTTATTAATGTAATTTTGGTCACA
TTAATTTTTTAAAACGTCTTGTTTTCTTCGTTAACGTGGGAATGAAAATT
TTACTGACAAATTTTGAACTTCCTCTGGTCATGATGAAACCTATTAACAG
TATGTATTCTATTTAATATTTTTCCCCTTCATTTACAGAGAGGATTACTT
CGAAATGAAAAGTCAAGAAAGACGAGGCAAAAATGCTGAAGAACAACAGT
ACGTATCAAACACTATGAAATTTTTAGAAATTGTCTTTACTTTAGTCAAG
TCCCAGATCGACCTAATCGGCAATTCAGGGGAATTGTATTTCTGAAAAAT
TACTAATTTATTTTCCCTGAGAAGTTTTTCCTTTGAAAGTTTCCCATAGT
TCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013741XLOC_013741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024475-exon-sc0000499-1575043694:231147..231491TCONS_00024475-exon-sc0000499-1575043694:231147..231491Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:224209..224278TCONS_00024475-exon-sc0000499-1575043694:224209..224278Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:223930..223970TCONS_00024475-exon-sc0000499-1575043694:223930..223970Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:223384..223449TCONS_00024475-exon-sc0000499-1575043694:223384..223449Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:222875..222979TCONS_00024475-exon-sc0000499-1575043694:222875..222979Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:222568..222633TCONS_00024475-exon-sc0000499-1575043694:222568..222633Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:222214..222362TCONS_00024475-exon-sc0000499-1575043694:222214..222362Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1575043694:221138..221353TCONS_00024475-exon-sc0000499-1575043694:221138..221353Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:231147..231491TCONS_00024475-exon-sc0000499-1510915933:231147..231491Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:224209..224278TCONS_00024475-exon-sc0000499-1510915933:224209..224278Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:223930..223970TCONS_00024475-exon-sc0000499-1510915933:223930..223970Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:223384..223449TCONS_00024475-exon-sc0000499-1510915933:223384..223449Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:222875..222979TCONS_00024475-exon-sc0000499-1510915933:222875..222979Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:222568..222633TCONS_00024475-exon-sc0000499-1510915933:222568..222633Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:222214..222362TCONS_00024475-exon-sc0000499-1510915933:222214..222362Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1510915933:221138..221353TCONS_00024475-exon-sc0000499-1510915933:221138..221353Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:231147..231491TCONS_00024475-exon-sc0000499-1491911889:231147..231491Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:224209..224278TCONS_00024475-exon-sc0000499-1491911889:224209..224278Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:223930..223970TCONS_00024475-exon-sc0000499-1491911889:223930..223970Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:223384..223449TCONS_00024475-exon-sc0000499-1491911889:223384..223449Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:222875..222979TCONS_00024475-exon-sc0000499-1491911889:222875..222979Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:222568..222633TCONS_00024475-exon-sc0000499-1491911889:222568..222633Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:222214..222362TCONS_00024475-exon-sc0000499-1491911889:222214..222362Clytia hemisphaericaexon
TCONS_00024475-exon-sc0000499-1491911889:221138..221353TCONS_00024475-exon-sc0000499-1491911889:221138..221353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000499supercontigsc0000499:221138..231491 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0355	16.9734	18.5773	25.6325	59.8748	45.5159	27.9947	28.1795	20.5345	18.8634	18.1483	24.7668	25.3921	28.744	33.8287	35.9984	31.1334	30.8331	15.6077	16.7139	23.6275	21.6392	24.7684	28.1189	16.3681	21.6201	19.446	26.3522	19.6241	20.7787
Blast
[Close]
BLAST of TCONS_00024475 vs. Swiss-Prot (Human)
Match: LA (Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 6.944e-43
Identity = 87/200 (43.50%), Postives = 131/200 (65.50%), Query Frame = 1 
Query:  283 MTENK-VEETSDLDKKIIRQVEYYFGDTNLPKDKFMKEKVKEDDGWISVECLTTFNRLKQLSTDFEEICKALKKSDSGLLEINETDFKIRRSKDKPVPDLDDPMVVKTKKMKTLYMKGFPKDYTMDQISDFLREHGAESVFIKMRKRDDFEFKGSIFTEVQTQEQADAFLEKKDLKIGEEEVMQIMKREDYFEMKSQERR 879
            M EN   E+ + L+ KI  Q+EYYFGD NLP+DKF+KE++K D+GW+ +E +  FNRL +L+TDF  I +AL KS + L+EI+E   KIRRS  KP+P++ D      K  +++Y+KGFP D T+D I ++L + G + + I+MR+     FKGSIF    + E A  F+E    K  E +++ I+ ++DYF  K++ER+
Sbjct:    1 MAENGDNEKMAALEAKICHQIEYYFGDFNLPRDKFLKEQIKLDEGWVPLEIMIKFNRLNRLTTDFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKN-RSVYIKGFPTDATLDDIKEWLEDKG-QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL-ILFKDDYFAKKNEERK 197
The following BLAST results are available for this feature:
BLAST of TCONS_00024475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LA6.944e-4343.50Lupus La protein OS=Homo sapiens GN=SSB PE=1 SV=2[more]
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