TCONS_00024431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024431
Unique NameTCONS_00024431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024431 ID=TCONS_00024431|Name=TCONS_00024431|organism=Clytia hemisphaerica|type=transcript|length=549bp
CCGACCAAGCAGCCAGAAGAGAGCAGAGCAGACACAGAACACATCCACAT
CAAAATTGGTGACAATCCTGTTAAAATTCTTTAAGAAGACCATAGAATTG
GAATAGGACTCCCAATTCAAGATGTTGACGTGTATGTGTATGTGTACGTG
TATGGGAACATTTTGAACAAGGAACAAGAACAAGTTGAAATTTTAGAGAA
TTGTATGGCTTGATGGTTTCTGCACGTTTTCAATCAAAGTATCAAAGATT
CTTACTCAGAGCTGAATTATGACTGTTACGTAAAAACTTTCACCCACGCC
ACGTTGGATATGTAGTCGTAATGAAGTTGTACGTTGTTCGATAAACATAT
GTATGGTTGCCAAAATAATTGGTCTTGATTTACTGTAACTGATACAGAAC
TTGACTGTTTATGTCATTCCTTATTGTTTTAAATCTTATGACACAATAAG
AATGGAAAGAGTAGTAGTATATATTAGTAGGCTATGATTACGAAATTTTT
TTGGAGACTACCttttaaatgaagaattttgACAAGTATTTAACTTACG
Run BLAST on NCBI

transcript from alignment at sc0000492:17636..19942-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024431 ID=TCONS_00024431|Name=TCONS_00024431|organism=Clytia hemisphaerica|type=transcript|length=2307bp|location=Sequence derived from alignment at sc0000492:17636..19942- (Clytia hemisphaerica)
CCGACCAAGCAGCCAGAAGAGAGCAGAGCAGACACAGAACACATCCACAT
CAAAATTGGTGACAATCCTGTTAAAATTCTTTAAGAAGACCATAGAATTG
GAATAGGTGAGTTTGTTAAATGATTTTCTTTCCATCATAAAGCTTTTAAA
GGGACCCCTCGCTTAAAAATGATAACAAGACACTCACTTCATATAAGTGT
TACAGAGTCATTTTCTTTCCTGGCAAGTTGTCCTGAAGACAGGAAGAAAG
GCTTCCCTTTTAGCTTTTTATGAGGCCTTGAAGTGATGCTGAAACTTTAC
ACTCCCCACTCCCTTGGCCTTTGGTTATTTGCTGCATCAATTCTTCACTT
TAGTCACTCCAATAGATCATTTCAGTAGCCTCAACCATCTTAAACTATAA
AAAGCAAATTGTTGGTGGTCACTCTACGACCGATACTTTTGTGGCTGGCT
AAAATTGTAATCAATATTGGAATGACTAAACTACAGCTATGATAATGCTG
GGATATCCTGAATCATGGGCAATATAGCAACAACTGCTAACAGCCAATGA
GAGATAAGCAAGTTGTTTTGGATATGCTACTTAGGTGTAAAATGCTAGAA
ATACACCGTTTAGGAGTGTTCCATCAATCTCCTATCCGNGGCTACTTAGG
TATAAAATGCTAGAAATAGTTGCTATCTTCATCTTGCCCATCAGTAAAGA
TTAGATGTATTAATACCAACAATCACGAAAAATTTGAACATGCATGTAGC
CCGGGGGTACTAGGGAAAGATGGGTTACGGGATGCTCCGCTGGTCAGGGT
ACCTTTTTTAACCTCCACGAGTCCCAGGTAGGGTTGCAAAAACACCAAAA
TAGAAAAATCAGTCCCACGTAGGGTTCATTTTTCGAACTTCAGCGGAGCA
CCCCTGTCGGTCGACAAGGGTAGTACCCCCCGGGCATGTAATTTTTACCT
TACTGTTCAAAATATCTAGTCAAAACACTTCAAGCAGTCAAGTGAAGTTA
ATATAATACCAAAAAAAGGTTTTTTTATAATCATTCAACTTTACATGCAC
GTTTAACTTCTTCGTGAATTGGCAGTATACATTTGCATTATTTAAGTAGT
ATTGATAGTGTAATACACGCTACAGGTGCTGTGGTATATTGGTCATTGAC
CTTGGTTGCTGCACAGGCGACTGAGGTTCGATTCTCACTAGCAGTGATTC
ACTTGGCAAGTGAATGAACCTTCGCCCGGGTCAACCCATGCCATATGAGG
GGAATTGGGTAGTCAGTTAAAGGTGCTGACGGGCGCTTATTGAAAACGTC
TATAGTTGTGAAAATGGGCCTGAAAGCCTCCTGCGACTCCAAATAGAAAT
AGAAATAGGTACTATCGAAGTGGGATCGTCTGGAAGACTTTTGCTTGTGG
ATGCACAGCTAACACTTGTGACATAATCCAACATAACTATAGCACTATGC
TGTGAGCTTTAAAATCTGTAACAGAGCAGCTACCGTAAGTTGGTCTCATG
TCGACATCCGTCTTCTAATTTCGAGATCCTTCTTTATATAGATAGGAATA
ATAAGAAGGTCGAAATCACTGATAGACTAAAGATTTTTCCTCTCATTGCG
CTAAACAAAGTCAATCAGCGATTCCGACCTTCCTCAGTTTCTACTGTTCT
CTAAAGAAGGGTGTCAAAATTAGAAGACGGATGTCGACATTAGACCAACT
TACGGTATATATTGTAGAGTGCTACAGGATTTGGATTATTTGATTTGTCA
TTATTGCAATTACAGTATTTTGGATTATGTTGCCTCACAGTTGTTTTAAT
AGGACTGCACAAACCAAATCTGCTGTCAATAAATGTCTGAAAATTTCTTT
TTATACCTATTCAGGACTCCCAATTCAAGATGTTGACGTGTATGTGTATG
TGTACGTGTATGGGAACATTTTGAACAAGGAACAAGAACAAGTTGAAATT
TTAGAGAATTGTATGGCTTGATGGTTTCTGCACGTTTTCAATCAAAGTAT
CAAAGATTCTTACTCAGAGCTGAATTATGACTGTTACGTAAAAACTTTCA
CCCACGCCACGTTGGATATGTAGTCGTAATGAAGTTGTACGTTGTTCGAT
AAACATATGTATGGTTGCCAAAATAATTGGTCTTGATTTACTGTAACTGA
TACAGAACTTGACTGTTTATGTCATTCCTTATTGTTTTAAATCTTATGAC
ACAATAAGAATGGAAAGAGTAGTAGTATATATTAGTAGGCTATGATTACG
AAATTTTTTTGGAGACTACCTTTTAAATGAAGAATTTTGACAAGTATTTA
ACTTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013713XLOC_013713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024431-exon-sc0000492-1575043694:19837..19942TCONS_00024431-exon-sc0000492-1575043694:19837..19942Clytia hemisphaericaexon
TCONS_00024431-exon-sc0000492-1575043694:17636..18078TCONS_00024431-exon-sc0000492-1575043694:17636..18078Clytia hemisphaericaexon
TCONS_00024431-exon-sc0000492-1510915933:19837..19942TCONS_00024431-exon-sc0000492-1510915933:19837..19942Clytia hemisphaericaexon
TCONS_00024431-exon-sc0000492-1510915933:17636..18078TCONS_00024431-exon-sc0000492-1510915933:17636..18078Clytia hemisphaericaexon
TCONS_00024431-exon-sc0000492-1491911889:19837..19942TCONS_00024431-exon-sc0000492-1491911889:19837..19942Clytia hemisphaericaexon
TCONS_00024431-exon-sc0000492-1491911889:17636..18078TCONS_00024431-exon-sc0000492-1491911889:17636..18078Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000492supercontigsc0000492:17636..19942 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.20107	2.77837	0.138374	0.675186	7.1143	4.40409	12.0553	14.7543	12.187	7.5317	9.52179	13.9826	21.2075	17.0805	15.2326	28.4249	8.67561	10.4672	7.02632	6.4857	16.8107	14.0084	7.73228	8.60161	4.59751	5.15171	8.01394	5.50846	6.16795	6.21634
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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