TCONS_00024392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024392
Unique NameTCONS_00024392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024392 ID=TCONS_00024392|Name=TCONS_00024392|organism=Clytia hemisphaerica|type=transcript|length=834bp
GACAGCCACGTGGCTGTTGTTGCAGAGCTGGCAATCGAAGATCAGAGAAT
ACAAATAATAAGAGTGATGACGAAGATGAAAAGAAGAACGAAGGAGACGA
GATGAAATACGATGAAGATGATGAAGAAGTTCTACCCGAGTTCAACGAgg
ctgaagaagaaaaaaacgaagaacaagaaaaaccaaaagattGCAAGACT
ACCTCTGGAAACTGTTGCAGTGCTCTTGAAGCACTTGGAGATGATACTAA
AGCCGATGACAACCTTGCAAATGACGTCAAAGCACTGTTCGAAAATTTGG
TCAGTAAAATCTCTGAAGCAAATGACGACACTGATGTGGTGACCTTGGAG
ACCGTATTTGAAGATTATGTTGAACTTAGCAAATGTTCGGCTAAGAAAGG
TGTTAGTGTGGACACGAAGAATGACTTGGCAGAAATGTTGAACATGCAAT
CTCCAAAACTAACCATGGAATTGTTTGGCAATCCACGAAGCTATTATGAA
GAGATGGAATTCATTTTGGAGAAAATCGATGATTCAGTTTTCGGAAAAGC
GGCTTAATTCTGTCAAGAAGATAAATGCGAAAAATATGGCAAGGGAAAGG
TATGTACTTTatattgaaataaataaaaatcttagattttcaaaatctaa
tCAATCATCTCATTTCTTGCTCCAAGTGTGTGGAGTTAGCTTTTTGgttt
actttaaattttatgCATTGTGCTCTACtctttacacccctttctcacag
acccactggaaacccttcccactggaaaaaaatggtcaaaatatcgttcc
cactggaaaattatcctctaatttttgttcccac
Run BLAST on NCBI

transcript from alignment at sc0000491:209217..215400+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024392 ID=TCONS_00024392|Name=TCONS_00024392|organism=Clytia hemisphaerica|type=transcript|length=6184bp|location=Sequence derived from alignment at sc0000491:209217..215400+ (Clytia hemisphaerica)
GACAGCCACGTGGCTGTTGTTGCAGGTAAAATATGTTCATTATTACGCCC
CATTTAAGTTTGTTGACTGTTGAAAAAATGGATACTAATGGAAACAAGAA
AGCCTCAGCGAGGTAAAGACCAGCAGTGTTGGCAGTGTCAACATATTTTC
GTTGCAGAGTAGCAATACAAATTTACAGgagtaaatttttctgatgtgtT
GACTCGAGTCACGCgagcaataaaaatttaattacttTATCATTTTGAGA
TAAGTACctttgaaagaaagaaagatttgaccatATAAGTTGGAGGTATT
AATTATATTTGGTTTTTTCTTATACATGCGCACAATAGAAAGTCAGATAA
TTCAATTTTAGCCTGGACGCGTCAATTGATAATTGTGCGCATAAGCCCCG
ATAAAGTCAAATCTTTTCGACCAGTTGCGTTTTAAAGGCCCATACCGCTG
TGCGCTGGGCCAACAAGAGCGGCTCTACAAAAACtccttttgaaaatcaa
acctaactttttgccatttttcagcaGCTCTTAAATAAAAAACCTGCTAA
AACAGAAAACCTGTCAGGTGTTTTGAAACTCATATAAACAGCTGGCATTT
TAGATATTGCATTGCAATATGCCTCCTGTGAGCATCACAGTTTAGCTTTC
TCTGAAATATAACCTGTGGTGACAGACTACACAGACTAGGTATTAAACTA
gacatagctttcactaactgccacccgctaattaatacaaatgcttgtaa
aaactaattaatgctaattaaggctttttaatgctttatagcaaaagttt
ggaaGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGA
GACAGAttgtaatttgactgtcagcaaattcactgattggtatatgtata
tatcttgtttaatccgaaagtcaaaagtaaatgcaTACAAGTATTTTGAC
TACAGGAAGAGAGAGCTTGAATCtgcttgaatttaaaaaaacttccagaa
acttctccattccatttcctgcatgttgaccaatcgggcaaaattTTACA
AGCGGAATAGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Naattcgagattccagtccaatatctatgcgtgaaactataagtgcctcc
tcgtcgctgcgctcctgcgggggcaaaaagtATCACGCATAATTCAATCA
CACATTGTTGATCAAAAAATCCATTTGTTCTGGTTGAATACGTGCTGAAT
AAAATCGCTATTTCTCGTCACAGTGAATATGTATAATGTCACACTCACGA
CAAGcataagttttttttcaatcccTGAGACTTAACAATTCAGAGAGGAT
TAGATAATATTcctgtttctttttttctgtattAAGAGCTGGCAATCGAA
GATCAGAGAATACAAATAATAAGAGTGATGACGAAGATGAAAAGAAGGTA
CAAtactttctcttttttaaactttaaattttttcgaaataatTTTCTGC
CACCACTACCACCACCTGCAGAATCGTGGAATTTGGGTGGATATTTTCGA
ACTATTATCTTTAAAACATTCTTTGTCGTTTGCTGAATTATGGAACTTCA
GATCTTTTGTATAAATTATGCAGGATATACAGGATATCAAAAGgaatatg
ttttttctttcatattcTAACTTTTGTTATATTTTCCATGAATCAGAAGA
GGAGAATATAAAAAAACTGAACTGATCTTTTATTTTCAACCAAatcttca
ttaaaaaaatgaaaaagacaaagaaatgaCATTTTAGAACGAAGGAGACG
AGATGAAATACGATGAAGATGATGAAGAAGTTCTACCCGAGTTCAACGAg
gctgaagaagaaaaaaacgaagaacaagaaaaaccaaaagattGCAAGTA
AGTTTGTAGTATTAAGAAATATCTATTGAAAAGATCAAAACTCTGAAGAT
GTGAAAATAGGGGTAATCTGTCATGTCATAAATTAAAGATTGCTCACTGG
GTGGCTAGGAGAAGTTCCAAATTCCAGGTACTTGTTCATGAGAAATATGT
TTTAATATAATTTGAGTTATTAttatactagccggtacccggcgtcgcac
gccggttaagctgtagctgaacgcactaaaagtcctatTGATGTTAAGcc
tggcttaaaaaagcgatcaaaaaaaaaacgtttaactctaaccttccccg
ggtgtcttatcttttaaccatatttggatcgtgtactgccccccccccgt
gacatatttttttgtttaagtcaaaagttatcagaaagagcattgtttac
tgtaccagtgtcgtttgaaacgactctgaaggtagttatttttctcgctt
cgctcgcgttaaatatgccgtccagtttaagggctctgaccatagtcaga
aagttgattttagtatctgaacataaaagtaatgttttagattctttagc
acttttaacaaagaattgcctttataaattgctttttaatcaaacccctt
aagaaaaattaagaacttaattgcaaaaatgacgttatgaactttaaaaa
gacgttaataatatgtcgcatcaccttcttttataaaaagtgctaagttt
taatgggtaattaacctttttgtttcgaacttttttcaaacttttttcaa
atgactgttttttttaagcaaaatccagatgaaaaattgatgaaaaacca
ctattttaaagatttcgagacaaagaagcatttacaaaaacttTCCGCAA
AATtgtttattgttcggtaaaagatacaccatctactgcgaaaatttttt
caaaatgttctttcttcgccgaaactaagctcttcaaagttgaaatactc
ttcctcgcaaaagtcttcattttcttcttcatcaaattttttcaatgcga
tttttgaattttctaattcagcaatagtttgtctaacagaaaatgtataa
catgccatagttttgttggttacatcagtcagaaaacacattttaaacac
ggcaattatgaaaaattcactatggtcagagcccttaaatgacaattttt
caggaaaaagtggggaggtcacaaagaatagtgcaactctttgtttttta
tcagatcaaaaaaaaaataagacaattctaagttgctttttaaaCCCCTg
gcataacttttcgaatttaaacataaaaaatgacgtacacactttttaac
ataacgacgacttgaatatttttataagaataaagaaatgaacaaatttt
ttcttatgctttatatcggcctttgaatgctgtttttgtccacaaacttt
ttgatttttatgttttgatttatttttgaaatattcttttatttctatga
aatgaaattgttttgttttgaaaagaattcgaatgccattaataaatacg
atcgttaaataccgaaatacaatcgaaacatttaaaacaaaagaagagag
aaaaaggcaacTCTGGGCAGAagttaaaattactaaaatgtagatgggcc
ttaaatttcaaaacaaaggctgaataaagtctaaacctagctctatccga
tcttttgaaaatggcgcgaatccaatagaacaaacTTGTGGAGCAAGaaa
ctaaaagtcataattttaaagcacaaacaaagcgaaaatgaaagtggtga
cacacagacacacaaagcaccgctattaatatatagactaAAATAGCTAA
AACAACTAGGCGTAGTGTTATAGGGCCCCCCGTTATAGTGGACACCATCC
TTGACTCCCGCCTAGGTGGCCCGATTTCGATACCCACCGTTTCTCTACGT
TTcccttggcaagtgaatatTCCTTCActcgggtcaacccatgccgccaa
gtgaggggaattgggtaccattacgctgatacaagagtgtgtcTATGAGA
CAGACATTATGACGTGCCGTGGCATTCAAAAGGTTCGGCCTCGTGTGAGC
ATCGCTTTtccagtgtcgttcgagtgtcatggtatacgccatggctaGGC
AGCTCGCGATTGTTGAGttgcagtgtctgtcagcgccgtgattcctactc
ctcCGTCGGTAGGATCCATTCCGAATGTATTTGGAGGGCTCATATATATC
TATCCATTTAAAATAACTATTTTACCCAGGACTACCTCTGGAAACTGTTG
CAGTGCTCTTGAAGCACTTGGAGATGATACTAAAGCCGATGACAACCTTG
CAAATGACGTCAAAGCACTGTTCGAAAATTTGGTCAGTAAAATCTCTGAA
GCAAATGACGACACTGATGTGGTGACCTTGGAGACCGTATTTGAAGATTA
TGTTGAACTTAGCAAATGTTCGGCTAAGAAAGGTATCCTTTTGATATATA
ATCAAACAATCGATTTATGTTCAAAGTGTGCTGTACTAATTTCTAGCAAT
GCAATGTCATTTTAATTTCAGAGAATGATCAATGAAATAAGCGGATTTTC
GGTGCCGAGTATCATCTCTAATTTTTTTGAGTCCTTTCTGTTTTTTAAGG
TGTTAGTGTGGACACGAAGAATGACTTGGCAGAAATGTTGAACATGCAAT
CTCCAAAACTAACCATGGAATTGTTTGGCAATCCACGAAGCTATTATGAA
GAGATGGAATTCATTTTGGAGAAAATCGATGATTCAGTTTTCGGAAAAGC
GGCTTAATTCTGTCAAGAAGATAAATGCGAAAAATATGGCAAGGGAAAGG
TATGTACTTTatattgaaataaataaaaatcttagattttcaaaatctaa
tCAATCATCTCATTTCTTGCTCCAAGTGTGTGGAGTTAGCTTTTTGgttt
actttaaattttatgCATTGTGCTCTACtctttacacccctttctcacag
acccactggaaacccttcccactggaaaaaaatggtcaaaatatcgttcc
cactggaaaattatcctctaatttttgttcccac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013691XLOC_013691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024392-exon-sc0000491-1491911889:209217..209241TCONS_00024392-exon-sc0000491-1491911889:209217..209241Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1510915933:209217..209241TCONS_00024392-exon-sc0000491-1510915933:209217..209241Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1575043694:209217..209241TCONS_00024392-exon-sc0000491-1575043694:209217..209241Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1491911889:211853..211913TCONS_00024392-exon-sc0000491-1491911889:211853..211913Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1510915933:211853..211913TCONS_00024392-exon-sc0000491-1510915933:211853..211913Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1575043694:211853..211913TCONS_00024392-exon-sc0000491-1575043694:211853..211913Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1491911889:212254..212363TCONS_00024392-exon-sc0000491-1491911889:212254..212363Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1510915933:212254..212363TCONS_00024392-exon-sc0000491-1510915933:212254..212363Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1575043694:212254..212363TCONS_00024392-exon-sc0000491-1575043694:212254..212363Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1491911889:214596..214798TCONS_00024392-exon-sc0000491-1491911889:214596..214798Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1510915933:214596..214798TCONS_00024392-exon-sc0000491-1510915933:214596..214798Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1575043694:214596..214798TCONS_00024392-exon-sc0000491-1575043694:214596..214798Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1491911889:214966..215400TCONS_00024392-exon-sc0000491-1491911889:214966..215400Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1510915933:214966..215400TCONS_00024392-exon-sc0000491-1510915933:214966..215400Clytia hemisphaericaexon
TCONS_00024392-exon-sc0000491-1575043694:214966..215400TCONS_00024392-exon-sc0000491-1575043694:214966..215400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:209217..215400 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0960172	0	0	0.0803716	0	0.215749	0	0	0	0	0	0.077976	0	0.0443904	0	0.0441809	0	0	0	0	0	0	0.389433	0.309131	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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