TCONS_00024382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024382
Unique NameTCONS_00024382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024382 ID=TCONS_00024382|Name=TCONS_00024382|organism=Clytia hemisphaerica|type=transcript|length=517bp
ACCAGTTTTAGGTGCCTTTAGCCTTTCTTTTTTCGCAGTTTATAGATTTT
TCCATAAGTGCCTAAAACTTTAGAATTCTTTGtttctatattttttacaa
aattttctagattcTGCAAGCATTattgctttttaacatttttttNgtat
tacaatagaattccctcgaggaattcctaagagattgcTATTGTAATAAA
CTCGAAACAAtctcacaatgcatcgcttttttagaaaaatcaaaaactcc
aataAGGTCTATTGCAACATGAAGTAATCATTGAGCCTTTTACTATGCTG
GTTAGAGTAAAATGATTGTTGCTGGATCGACAATCTGTCATTGCCAACAA
TGTTCTTATCGTAAAGTACCTTTAGGATAAACCTTTGTTCTTTAGTAGAT
TTGTGTACTCAAAAGGTCAAATGTTACTAAAGAGTACTGTTTTCTCCTTT
ACCACCTTTTCTTTTAGAacaattccaaaaaatattaagtaaatgggttt
taaaatttgtatttttc
Run BLAST on NCBI

transcript from alignment at sc0000489:180552..181068

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024382 ID=TCONS_00024382|Name=TCONS_00024382|organism=Clytia hemisphaerica|type=transcript|length=517bp|location=Sequence derived from alignment at sc0000489:180552..181068 (Clytia hemisphaerica)
gaaaaatacaaattttaaaacccatttacttaatattttttggaattgtT
CTAAAAGAAAAGGTGGTAAAGGAGAAAACAGTACTCTTTAGTAACATTTG
ACCTTTTGAGTACACAAATCTACTAAAGAACAAAGGTTTATCCTAAAGGT
ACTTTACGATAAGAACATTGTTGGCAATGACAGATTGTCGATCCAGCAAC
AATCATTTTACTCTAACCAGCATAGTAAAAGGCTCAATGATTACTTCATG
TTGCAATAGACCTtattggagtttttgatttttctaaaaaagcgatgcat
tgtgagaTTGTTTCGAGTTTATTACAATAgcaatctcttaggaattcctc
gagggaattctattgtaatacNaaaaaaatgttaaaaagcaatAATGCTT
GCAgaatctagaaaattttgtaaaaaatatagaaaCAAAGAATTCTAAAG
TTTTAGGCACTTATGGAAAAATCTATAAACTGCGAAAAAAGAAAGGCTAA
AGGCACCTAAAACTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013684XLOC_013684Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024382-exon-sc0000489-1491911889:180552..181068TCONS_00024382-exon-sc0000489-1491911889:180552..181068Clytia hemisphaericaexon
TCONS_00024382-exon-sc0000489-1510915933:180552..181068TCONS_00024382-exon-sc0000489-1510915933:180552..181068Clytia hemisphaericaexon
TCONS_00024382-exon-sc0000489-1575043694:180552..181068TCONS_00024382-exon-sc0000489-1575043694:180552..181068Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:180552..181068 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.25767	0.201496	0.295686	0	0.354201	0.819746	0	0	0.316955	0.976291	1.94005	0.503022	0.329753	5.11323	3.13999	0.834264	0.23659	0	0.236113	6.2231	4.49512	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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