TCONS_00024340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024340
Unique NameTCONS_00024340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length864

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024340 ID=TCONS_00024340|Name=TCONS_00024340|organism=Clytia hemisphaerica|type=transcript|length=864bp
AGNTTGATTTACCATGAGAAGAACTACCCAGTTGGCACCAAAATGTTTAT
CTGACGTTACAttgacgttgtgaacattagatgaacgttgaaacaacttt
gTGTACCAGTAACTATGCTATaccagaaacaaaaaaatttggtcGTGTAA
CGAACTCCTAGTAACTTAAAGATTGATTGAGGACGAATTTGATTTAGGCT
GAAAACAACCGAAAATAGaaggtttgaaagaaatttttctatgtttttca
acttttcgaaataTTGTCATTAAGATTTCTAGGTCTGAATGTAAATATTT
AAACCACGAGATTCAAGATTGGTATTGATTAATAAAGCCAAAGGGTGATG
AGTTATTATTTTACATGACAAGATGGATTTATCATATAGATCTATTGGCC
AACCGTTAAGTCCTCCAACCCCAGTGACAGGCTAATTTTATCTGCTGTGA
GAGcgaaatgggctgttccatgaAAAAACTATACAGtagggtggacgaac
cttttcaaggcaaagaaaaaaacatcttgaaaattgtggaaaagggtaaa
agttccaaaaataccccttggaaaaattttttcataccTAAAAAGTGTGG
GTGGACGAACTAATATCAGTCCTTttacccccctggaaattttagaataa
ttgtttacccccttggaaaaatgaaggtTGGTCCAACCCCATGTATATGG
ATacaaaatggaatggcccaatatacATTTAACTTTAAATCATTCTTTTT
TGGAGATTATTTTATTACATTTGGCgaagttttataaaaagtatataCAG
TTTTGTAAATGTTTCCTTTTTTTCTACtaagaaaatatatttgtaAGTTC
TAGTATCATCAGTc
Run BLAST on NCBI

transcript from alignment at sc0000487:15272..16135

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024340 ID=TCONS_00024340|Name=TCONS_00024340|organism=Clytia hemisphaerica|type=transcript|length=864bp|location=Sequence derived from alignment at sc0000487:15272..16135 (Clytia hemisphaerica)
gACTGATGATACTAGAACTtacaaatatattttcttaGTAGAAAAAAAGG
AAACATTTACAAAACTGtatatactttttataaaacttcGCCAAATGTAA
TAAAATAATCTCCAAAAAAGAATGATTTAAAGTTAAATgtatattgggcc
attccattttgtATCCATATACATGGGGTTGGACCAaccttcatttttcc
aagggggtaaacaattattctaaaatttccaggggggtaaAAGGACTGAT
ATTAGTTCGTCCACCCACACTTTTTAggtatgaaaaaatttttccaaggg
gtatttttggaacttttacccttttccacaattttcaagatgtttttttc
tttgccttgaaaaggttcgtccaccctaCTGTATAGTTTTTtcatggaac
agcccatttcgCTCTCACAGCAGATAAAATTAGCCTGTCACTGGGGTTGG
AGGACTTAACGGTTGGCCAATAGATCTATATGATAAATCCATCTTGTCAT
GTAAAATAATAACTCATCACCCTTTGGCTTTATTAATCAATACCAATCTT
GAATCTCGTGGTTTAAATATTTACATTCAGACCTAGAAATCTTAATGACA
AtatttcgaaaagttgaaaaacatagaaaaatttctttcaaaccttCTAT
TTTCGGTTGTTTTCAGCCTAAATCAAATTCGTCCTCAATCAATCTTTAAG
TTACTAGGAGTTCGTTACACgaccaaatttttttgtttctggtATAGCAT
AGTTACTGGTACAcaaagttgtttcaacgttcatctaatgttcacaacgt
caaTGTAACGTCAGATAAACATTTTGGTGCCAACTGGGTAGTTCTTCTCA
TGGTAAATCAANCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013651XLOC_013651Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024340-exon-sc0000487-1491911889:15272..16135TCONS_00024340-exon-sc0000487-1491911889:15272..16135Clytia hemisphaericaexon
TCONS_00024340-exon-sc0000487-1510915933:15272..16135TCONS_00024340-exon-sc0000487-1510915933:15272..16135Clytia hemisphaericaexon
TCONS_00024340-exon-sc0000487-1575043694:15272..16135TCONS_00024340-exon-sc0000487-1575043694:15272..16135Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000487supercontigsc0000487:15272..16135 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.730438	0.288601	0.557096	1.17348	1.3693	0.791514	1.04264	1.04612	2.12536	1.34677	0	0.0660126	0	0.0416763	0	0	0.157108	0	0	0.0564615	4.71048	3.94448	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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