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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024274 ID=TCONS_00024274|Name=TCONS_00024274|organism=Clytia hemisphaerica|type=transcript|length=2522bp
aatttttttctgtcCAATCCAAAATGAGATTGCGGTTTTTAACAAACAGA
AAAACCTTTTCgattattataattttttatttcactcGAACATTTTTTTG
TACACattaaatgaaaattattgGATTATTTCTCAAAATTGCAAATTCAA
ATATACTAATTTTAACATAAATACTTGCTacaaaattgttataatttatG
AGTCAAAACAAccattttttacattcaaagtGATTCTGATACTTATAAGa
atgtcaaaatattttccagAGTTGTTCTTATTATAATCAGCACATCGTGT
TAGTATAAAttgcatacatgttttttataagaacaaactatataagaaca
tgaggcttcaatggccaaaatgttaagaacaaagttctaaaacacccaat
ttcataggaaaatggacaaaattactcaaaaaatgaaagaaataagaaca
tgttaagaacattttttggcttaaatctcaaaaagtttggANGGCTGTTC
TTATTATAATCAGCACATCGTGTTAGTATAAattgcatacacgtttttta
taagaacaaactatataagaacataaagcttcgatggccaaaatgttaag
atcaAGTTATTGGATTATTTCTCAAAATTGCAAATTCAAATATACTAATT
TTAACATAAATACTTGCTacaaaattgttataatttatGAGTCAAAACAA
ACATTATTTACATTCAAAGTGATTCTGATacttataagaacgtcaaaata
TTTTCCAGGGTTGTTCTTATTATAATCAGTATAGAttgcatacatgtttt
tttataagaacaaactatataagaacataaggcttcaatggccaaaatgt
taagaacaaagtTCTAAAACACCCagtttcataggaaaatggacaaaatt
actcaaaaaatgaaagaaataagaacatgttaagaacattttttggctta
aatctcaaaaagtttggatgttcttataagaaaaatgtgaATTGTGGAGT
CTTCAAAGCCGTTGAAtgtcattttaaattttctttatttatttgaCACC
GAAGCCTTCATGcaatactttgttcttataaaaaacatgaaaaaattgat
tccatTATTGATTAGAGAtcgaataaagttttttttttacttttcatctt
TTCCAATCTTTTTTACATTGCTTAATATACACTTAATTTATTTGACTTTA
TAAATATTGTTCATATTTTAGTTCAGCTCACTCAATTTTTTCACCGCAGT
GGGTTTGGATTAAAGTTTTTGGTACGCTTGTAACATTTCAATAGCATTCG
GAAATAATCTCAAATCTTCAATTTTGTGCTTCTCAAAAGTTGGTCTGAAA
GAGCTCCACCCAGCAACAGCTAAATTGTCTGCAGCCGTTTTTGAATGTTT
ACCAGAATATAATTTCGAACCATCATCCAAAACTTCAATATTGGTAATCT
CGCCAAGATTCCAGACATCTCCTGTTCCGCCATTATGTTGATAAGTACCT
TGTTTGAATAAGATACTTGTTCCCAGACCTATGGCGTTCTCAGTTGGCGC
CCGATTCACCGCCACAAGATCGTATCTTTGAACACGACAAGCTGGATCTG
GATCATCCCAATCTACTGTATATTTCAATAcagatttatcaaaatttacc
ACCTTAGCTGGAAAGAATTGCCATTGAGCATAATGTGCAATGACTGAATC
TCCATACATTGGAACACTGGCACGTAAGGATTCTTTATTGGCGATTTCCG
CTTCCGTTTCCGGCTCATGTTGAGGTAGAACCCGAGTTCCATCTTCAGGG
ACAACCTCTCGGATTTGTTGACAAATTTTCGTAATAGTCGCTTGATATGA
CGCCTCCCCTGTGATGTGATCAGCAGTCATAATAAGAGGTTCTTGATCTG
TTGGTAAAACCATTCCAACACTGCTTTGTTTCCAGGCTGCTCGGTCTGAA
TCCTCACCTGTACCAACTTCCAGCACGATAGCCTTTTTATGTAAGGATCG
TAACGCGAAATTAGCTTCCATTTGACAATTCTGACTCCTGGAATATTCAG
CAGATACACACATAACAACCACAGTTGATTCTGCCAAACCTTGAGCAATT
TGACCAAACATTCCAGAATCATCTACACTATCCAGTTGTTCAATATCCAA
CCAGACTCTCTCCCCAATCTCTTTCTCTATATCAGCTTTGATTTTCCTTG
GATCTGAGAATGTATGACCAGTGAATGAACGGACTTGCTCGGCCTCATGA
GATAATTTTGAGTTGGCCCAACAATAGGATAAAAACACTCTTGGTGGGTC
AGAATCACCTCCAGATCTTGTCTTCTTAGCTTTTGGATCACATACTACCA
ACTTCTCCAAGTTCTTTTGAAGTTCGGTTAGTTTTTCATCGTACACATCG
TCATTAGCGAATTGAATGTAGAGCTGTCCTAAAATTTCAACGTGGAAACA
TGATGTTAAATATTNTCGGTTAGTTTTTCATCGTACACATCGTCATTAGC
GAATTGAATGTAGAGCTGTCCT Run BLAST on NCBI transcript from alignment at sc0000486:90937..93683+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024274 ID=TCONS_00024274|Name=TCONS_00024274|organism=Clytia hemisphaerica|type=transcript|length=2747bp|location=Sequence derived from alignment at sc0000486:90937..93683+ (Clytia hemisphaerica)
aatttttttctgtcCAATCCAAAATGAGATTGCGGTTTTTAACAAACAGA
AAAACCTTTTCgattattataattttttatttcactcGAACATTTTTTTG
TACACattaaatgaaaattattgGATTATTTCTCAAAATTGCAAATTCAA
ATATACTAATTTTAACATAAATACTTGCTacaaaattgttataatttatG
AGTCAAAACAAccattttttacattcaaagtGATTCTGATACTTATAAGa
atgtcaaaatattttccagAGTTGTTCTTATTATAATCAGCACATCGTGT
TAGTATAAAttgcatacatgttttttataagaacaaactatataagaaca
tgaggcttcaatggccaaaatgttaagaacaaagttctaaaacacccaat
ttcataggaaaatggacaaaattactcaaaaaatgaaagaaataagaaca
tgttaagaacattttttggcttaaatctcaaaaagtttggANGGCTGTTC
TTATTATAATCAGCACATCGTGTTAGTATAAattgcatacacgtttttta
taagaacaaactatataagaacataaagcttcgatggccaaaatgttaag
atcaAGTTATTGGATTATTTCTCAAAATTGCAAATTCAAATATACTAATT
TTAACATAAATACTTGCTacaaaattgttataatttatGAGTCAAAACAA
ACATTATTTACATTCAAAGTGATTCTGATacttataagaacgtcaaaata
TTTTCCAGGGTTGTTCTTATTATAATCAGTATAGAttgcatacatgtttt
tttataagaacaaactatataagaacataaggcttcaatggccaaaatgt
taagaacaaagtTCTAAAACACCCagtttcataggaaaatggacaaaatt
actcaaaaaatgaaagaaataagaacatgttaagaacattttttggctta
aatctcaaaaagtttggatgttcttataagaaaaatgtgaATTGTGGAGT
CTTCAAAGCCGTTGAAtgtcattttaaattttctttatttatttgaCACC
GAAGCCTTCATGcaatactttgttcttataaaaaacatgaaaaaatataa
aaaacatgaaaaaattgaTTCCANCTGTGAATTGTAGAGTCTTCAAATCC
GTTGAATGTCATTTTAAATTATCTTTATTTATTTGACACCGAAGCCTTCA
TGcaatactttgttcttataaaaaacatgaaaaaatataaaaaacatgaa
aaaattgattccatTATTGATTAGAGAtcgaataaagttttttttttact
tttcatcttTTCCAATCTTTTTTACATNATTATTGATTAGAGAtcgaata
aagttttttttttacttttcatcttTTCCAATCTTTTTTACATTGCTTAA
TATACACTTAATTTATTTGACTTTATAAATATTGTTCATATTTTAGTTCA
GCTCACTCAATTTTTTCACCGCAGTGGGTTTGGATTAAAGTTTTTGGTAC
GCTTGTAACATTTCAATAGCATTCGGAAATAATCTCAAATCTTCAATTTT
GTGCTTCTCAAAAGTTGGTCTGAAAGAGCTCCACCCAGCAACAGCTAAAT
TGTCTGCAGCCGTTTTTGAATGTTTACCAGAATATAATTTCGAACCATCA
TCCAAAACTTCAATATTGGTAATCTCGCCAAGATTCCAGACATCTCCTGT
TCCGCCATTATGTTGATAAGTACCTTGTTTGAATAAGATACTTGTTCCCA
GACCTATGGCGTTCTCAGTTGGCGCCCGATTCACCGCCACAAGATCGTAT
CTTTGAACACGACAAGCTGGATCTGGATCATCCCAATCTACTGTATATTT
CAATAcagatttatcaaaatttaccACCTTAGCTGGAAAGAATTGCCATT
GAGCATAATGTGCAATGACTGAATCTCCATACATTGGAACACTGGCACGT
AAGGATTCTTTATTGGCGATTTCCGCTTCCGTTTCCGGCTCATGTTGAGG
TAGAACCCGAGTTCCATCTTCAGGGACAACCTCTCGGATTTGTTGACAAA
TTTTCGTAATAGTCGCTTGATATGACGCCTCCCCTGTGATGTGATCAGCA
GTCATAATAAGAGGTTCTTGATCTGTTGGTAAAACCATTCCAACACTGCT
TTGTTTCCAGGCTGCTCGGTCTGAATCCTCACCTGTACCAACTTCCAGCA
CGATAGCCTTTTTATGTAAGGATCGTAACGCGAAATTAGCTTCCATTTGA
CAATTCTGACTCCTGGAATATTCAGCAGATACACACATAACAACCACAGT
TGATTCTGCCAAACCTTGAGCAATTTGACCAAACATTCCAGAATCATCTA
CACTATCCAGTTGTTCAATATCCAACCAGACTCTCTCCCCAATCTCTTTC
TCTATATCAGCTTTGATTTTCCTTGGATCTGAGAATGTATGACCAGTGAA
TGAACGGACTTGCTCGGCCTCATGAGATAATTTTGAGTTGGCCCAACAAT
AGGATAAAAACACTCTTGGTGGGTCAGAATCACCTCCAGATCTTGTCTTC
TTAGCTTTTGGATCACATACTACCAACTTCTCCAAGTTCTTTTGAAGTTC
GGTTAGTTTTTCATCGTACACATCGTCATTAGCGAATTGAATGTAGAGCT
GTCCTAAAATTTCAACGTGGAAACATGATGTTAAATATTNTCGGTTAGTT
TTTCATCGTACACATCGTCATTAGCGAATTGAATGTAGAGCTGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024274-exon-sc0000486-1491911889:90937..92022 | TCONS_00024274-exon-sc0000486-1491911889:90937..92022 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1510915933:90937..92022 | TCONS_00024274-exon-sc0000486-1510915933:90937..92022 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1575043694:90937..92022 | TCONS_00024274-exon-sc0000486-1575043694:90937..92022 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1491911889:92182..92261 | TCONS_00024274-exon-sc0000486-1491911889:92182..92261 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1510915933:92182..92261 | TCONS_00024274-exon-sc0000486-1510915933:92182..92261 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1575043694:92182..92261 | TCONS_00024274-exon-sc0000486-1575043694:92182..92261 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1491911889:92328..93683 | TCONS_00024274-exon-sc0000486-1491911889:92328..93683 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1510915933:92328..93683 | TCONS_00024274-exon-sc0000486-1510915933:92328..93683 | Clytia hemisphaerica | exon |
| TCONS_00024274-exon-sc0000486-1575043694:92328..93683 | TCONS_00024274-exon-sc0000486-1575043694:92328..93683 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000486 | supercontig | sc0000486:90937..93683 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000157 | TIR_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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