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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024233 ID=TCONS_00024233|Name=TCONS_00024233|organism=Clytia hemisphaerica|type=transcript|length=5684bpRun BLAST on NCBI transcript from alignment at sc0000482:170795..197960+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024233 ID=TCONS_00024233|Name=TCONS_00024233|organism=Clytia hemisphaerica|type=transcript|length=27166bp|location=Sequence derived from alignment at sc0000482:170795..197960+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024233 vs. Swiss-Prot (Human)
Match: PITM1 (Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4) HSP 1 Score: 394.045 bits (1011), Expect = 1.131e-113 Identity = 215/523 (41.11%), Postives = 308/523 (58.89%), Query Frame = 2
Query: 2126 STLNFRFTINGVFTLGSPIGMV-ALKQKI-SSLDKDFSQPRCGQLYNLFHSFDPISSRIEPIIDENFANVRPAPVPRCNAFPFND-------DIQYNASSLFLDPNLNLNDESDISDSNSLRSHALLDRKVSSTSVSSNARKSAYNDKAFYSSWWGTKRIDYMTHSPEGLQQFPVSTLIQLCYNSYWESKDIVTFIVWQVLQEIYSHIQSPSNCLEVDRSIALDYLQLPPCEKWTHKRTALKVKNLNPNHRANDVCSMSGAQHYITGKFAYGPVDMAALKEEKVDIYYSRRPQLNEWKHFGTDTTDSNGRLVYTLP-SRDIECGVYNVKMVVRGDHSSVGCNMAVLPPQTEAVVFSIDGSFLASYSIRGVDPKIRGGAVDVVRHWQELGYLIIYVSSRLLFQKHQVMSWLAAHNFPFGIVSFGENVSKDYQKHKLEFLKNICKFEKVFIHAAYGSSRDISIYSNSLKLSQQRIFILGKKPKSKKADNVQWITDGYKNHLTELQEGLYSARRSANKKFFAALGN 3664
ST F ++G F GSP+G+V AL++ + +L+ +P C Q+YNLFH+ DP +SR+EP++ F + P VPR FP D D SSLFL+ L + S S + + L + A + WWGTKRIDY + PE L FP TL L + SYWES D+V FI+ QV+++ + + C E SI Y P EKW KRT +K++N+ NHRA+D G ++G+F YGP+D+ L EKVD+Y +P +W HFGT+ T+S+GRL + +P R + GVY V+MVVRGDH+ C + V+ TEAVVFSIDGSF AS SI G DPK+R GAVDVVRHWQ+ GYLI+YV+ R QKH+V++WL+ HNFP G+VSF + ++ D + K FL+++ + ++ I A YGS +D+++Y+ +L LS + +I+G+ + +A Q+++DGY HL +L+ G +S S + AALG
Sbjct: 682 STARLDFKVSGFFLFGSPLGLVLALRKTVMPALEAAQMRPACEQIYNLFHAADPCASRLEPLLAPKFQAIAPLTVPRYQKFPLGDGSSLLLADTLQTHSSLFLEELEMLVPSTPTSTSGAFWKGSEL---ATDPPAQPAAPSTTSEVVKILERWWGTKRIDYSLYCPEALTAFPTVTLPHLFHASYWESADVVAFILRQVIEKERPQL---AECEE--PSI---YSPAFPREKWQRKRTQVKIRNVTSNHRASDTVVCEGRPQVLSGRFMYGPLDVVTLTGEKVDVYIMTQPLSGKWIHFGTEVTNSSGRLTFPVPPERALGIGVYPVRMVVRGDHTYAECCLTVVARGTEAVVFSIDGSFTASVSIMGSDPKVRAGAVDVVRHWQDSGYLIVYVTGRPDMQKHRVVAWLSQHNFPHGVVSFCDGLTHDPLRQKAMFLQSLVQEVELNIVAGYGSPKDVAVYA-ALGLSPSQTYIVGRAVRKLQA-QCQFLSDGYVAHLGQLEAGSHSHASSGPPR--AALGK 1189 HSP 2 Score: 384.415 bits (986), Expect = 2.081e-110 Identity = 233/608 (38.32%), Postives = 317/608 (52.14%), Query Frame = 2
Query: 284 MLTKEYRIPLPLSLEEYRIAQLYMIQKKSRLESTGSGSSVEIIENRPYKNGPGGNGQYTKKIYHIGSHLPGWLKALLPKTALRVEEEAWNAYPYTKTRHTCPFIEKFFIDIETHYLADYGQTENIFELSSSERKNIEIDLIDPIKDTFPQKDYKKEEDPVLFVSAKTGRGPLRDDWLQGYIDGTNKSPVMCAYKLIKVEFKYWGMQSKIENFIQS-GLRNPMLVGHRQAWSWQDEWHGLTIQDIRELEKEAQEELSKRMDTIDNNSCQENHQAANTDNNNHSESNGNT-TSESIDSQTSQDPSCGAXXXXXXXXXXXXXXXNNHRHSSIHAITNQERLLEIHMKHIEQXXXXXXXXXXXXXXXXYYDALDYFDDPSDTPIHHASTSTLTKNNIHQ---------QVNGEPFIGVTRPK-IPSEPIVVSPTINISHENQFTYKA-RVQTLVFVIQGGSVSDYAI-DTESRMRDFQTFERLFTKTCNTCYPGARERVFFEVIECMSLTKGIMKQLLELNVESRKGPLKTDDFENLSNTFPFSAIPLLMFHHPDFQLVCNSLVDMINQKYEQL------QGILNEDRHEVYFLCDSVGGLFVFQALCQYSN 2047
ML KEY I LP+SL+EY++AQLYMIQKKSR ES+G GS VEI+ NRPY +GPGG+GQYT K+YH+GSH+PGW +ALLPK AL+VEEE+WNAYPYT+TR+TCPF+EKF I+IET+YL D GQ N+F LS +ER+ +D ID ++D +YK EEDP L+ S KTGRGPL DDW + P+MCAYKL KVEF+YWGMQ+KIE FI GLR ML HRQAW WQDEW L++ DIR LE+E L++RM + S Q + + NT T + ++ D S AS S++ +S+ H + + L E M++I + DSE S ++DA + F D + +TK N + + G P G K I + + + +A V L ++ G++ D D S+ D QT F +P A V ++ C + + L+ S G D + P +A+PLL +Q +++ NQ Y G +V + D VGG+ F ALC +N
Sbjct: 1 MLIKEYHILLPMSLDEYQVAQLYMIQKKSREESSGEGSGVEILANRPYTDGPGGSGQYTHKVYHVGSHIPGWFRALLPKAALQVEEESWNAYPYTRTRYTCPFVEKFSIEIETYYLPDGGQQPNVFNLSGAERRQRILDTIDIVRDAVAPGEYKAEEDPRLYHSVKTGRGPLSDDWAR---TAAQTGPLMCAYKLCKVEFRYWGMQAKIEQFIHDVGLRRVMLRAHRQAWCWQDEWTELSMADIRALEEETARMLAQRMAKCNTGSEGSEAQPPGKPSTEARSAASNTGTPDGPEAPPGPDASPDASFGKQWSSSSRSSYSSQH-----GGAVSPQSLSEWRMQNIAR-------DSENSSEEEFFDAHEGFSDSEEV-----FPKEMTKWNSNDFIDAFASPVEAEGTPEPGAEAAKGIEDGAQAPRDSEGLDGAGELGAEACAVHALFLILHSGNILDSGPGDANSKQADVQTLSSAFEAVTRIHFPEALGHVALRLVPCPPICAAAYALVSNLSPYSHDG----DSLSRSQDHIPLAALPLLATSSSRYQGAVATVIARTNQAYSAFLRSPEGAGFCG----QVALIGDGVGGILGFDALCHSAN 580 The following BLAST results are available for this feature:
BLAST of TCONS_00024233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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