TCONS_00024243 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024243
Unique NameTCONS_00024243
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024243 ID=TCONS_00024243|Name=TCONS_00024243|organism=Clytia hemisphaerica|type=transcript|length=645bp
TAGAggttcaaaaacaaaaaagtgaaaaacaatAGGAGGAGAATTTATCA
AAATGGTATTCCGAGATGTGAATAACAAGCATTACCTACGATCATTTTTC
GTATTCGGATTATTCGAAGTTCTTTTGTGCAGTGGTATCACTTACGGATG
GGCTAGCATCGTCTATGTTTTCAAAGTCGAATATTTCTACTACGATTCAT
TATGTCATGAATCAGCAACTACCCTGAAAAATAATACAAATAGATCATCA
AAGTTAGACTCGGAAGTTCTTGGTGAAGATGGTCTACCAGGCTGTTTAGC
TCaagacaaaatatttaatttgatATTTACAGTCGCTGTGTTTTTCTTTA
CATCTGTACAATTTCCGACGGGCTTGTTTTTGGATAAGTTTGGACCAAGA
GTGGCTCGAATGTTTGGAGGgtCAATCTATGTTTTAGCATGCTTTGGCTT
AGGTTTCGTAGCAATTGGTTACGAGAATTTGCTATTCCCGATTTTCACAA
TAATCTGCGTTGGTGGAGGGATGCTTTCTATGTCAGTTTATCAGGTAGCA
AACATCATTTACCGTCAAGATCGTTCAAAGATTATTTGCATCATGCATGG
TGCTTACGACTCTTCCGCCGTCATGTTACTCATATTTAAGGTAAA
Run BLAST on NCBI

protein sequence of TCONS_00024243-protein

>TCONS_00024243-protein ID=TCONS_00024243-protein|Name=TCONS_00024243-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MVFRDVNNKHYLRSFFVFGLFEVLLCSGITYGWASIVYVFKVEYFYYDSL
CHESATTLKNNTNRSSKLDSEVLGEDGLPGCLAQDKIFNLIFTVAVFFFT
SVQFPTGLFLDKFGPRVARMFGGSIYVLACFGLGFVAIGYENLLFPIFTI
ICVGGGMLSMSVYQVANIIYRQDRSKIICIMHGAYDSSAVMLLIFKV
Run BLAST on NCBI

transcript from alignment at sc0000482:71939..74343-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024243 ID=TCONS_00024243|Name=TCONS_00024243|organism=Clytia hemisphaerica|type=transcript|length=2405bp|location=Sequence derived from alignment at sc0000482:71939..74343- (Clytia hemisphaerica)
TAGAGGTTCAAAAACAAAAAAGTGAAAAACAATAGGAGGAGAATTTATCA
AAATGGTATTCCGAGATGTGAATAACAAGCATTACCTACGATCATTTTTC
GTATTCGGATTATTCGAAGTTCTTTTGTGCAGTGGTATCACTTACGGATG
GGCTAGCATCGTCTATGTTTTCAAAGTCGAATATTTCTACTACGATTCAT
TATGTCATGAATCAGCAACTACCCTGAAAAATAATACAAATAGATCATCA
AAGTTAGACTCGGAAGTTCTTGGTGAAGATGGTCTACCAGGCTGTTTAGC
TCAAGACAAAATATTTAATTTGATATTTACAGTCGCTGTGTTTTTCTTTA
CATCTGTACAATTTCCGACGGGCTTGTTTTTGGATAAGTTTGGACCAAGA
GTGGCTCGAATGTTTGGAGGGTAAGTAATAATATATTTCTCATATGCTAA
AAAAAGATTTATACACCCCCTTCTCACAGACTCGGTAGGATTTTTTCAGC
CAGTGAGGATAAGAATAACGGACATTGATATTCCCAGAATTTTTATGACT
GAGGATTTCAATTATTTTGTGTTCAAGCTAGAAAATTCAGTGGGGATGGA
AAAAAGCACAATATTTTGAAGTGAGGATTGGGTGTATTTATGCAGTAGAT
TAAAAATTATGCACGATTCTGTAGTCAAGAACTAAATGTGAGTTATGAAA
AGAAAGTAGTCTTTAAGGGACCTTATAATACGAGAACAAACATTTCGACA
ACTGAATATTTCGTGTGTAATAGAATACAATTGCAACTGTATACGCAACA
TGAAACTCTCAATCATTTAGCATGTCTCTTTATCAAACTCTCTAAAAGAA
CATAATACTCAGTTTCAGTCTAAAGTTACCTCAAAAAATGACAAAAAGGT
AGACAGAATTGATCTCCGCTCACTGTGGGAGGGATATCTATTATAAATGT
TTTCATTCACAGCATAGTAAAATGTCTACTAAGGTTCCGATGTGTAGGTT
TCTCAAATAGTCTTACTACTTAACAAAAGACCAATTACCCGGCTATAACT
TATGATCATAGATACCTGTTCTGTTCTAGATCTAAGCTTGATCATATGAA
AACTTATGTTACAAAACTGCATAATCTTTGTATGTGTCAAAGGGAACATA
TTTAATCAGTTCGTAAAAAAATGATTCTTTTATCTATTCGTGACTCATGA
ATAGACCTCATTGGCATTTGGGCCTTCAAAAAGATTGCAAAGAAACACCC
CTTTCTCACAGACCCGGTAGGATTTTTTCAGCCAGTGGGGATAAAAATAA
CGGACTAAAACTCGATGGGGATCGATATTCCTATGTTTTTTTATGATTGG
GGATTTCAATNGACCCGGTAGGATTTTTTCAGCCAGTGGGGATAAAAATA
ACGGACTAAAACTCGATGGGGATCGATATTCCTATGTTGGGGATTTCAAT
TTTTTTGTTTTCAAGTCAGAAAATTAAACGCGGAAGGGAAAAATAGGGAT
ATTCAAAAATAGTAAATATTTTGCAGTGAGGATTGATTTATTTAATTATC
TTCAGTGGTGACAAAAATTGGAGGATAATTTTCCACCGGGGACGATATTT
TGGCCATTTTTCCAGTGGGTCTGTGAGAAGGGGGTGCAAAAAAGCGTCCT
CTTTTGGAAACATACTCTAAAGTTTCATTTTAAATGGTTTAGTTGACTAA
AACAATTATTTTTTGTTTTTTTTATAGGTCAATCTATGTTTTAGCATGCT
TTGGCTTAGGTTTCGTAGCAATTGGTAAGTTTTAAAGAGGACTTACTGTA
TTTTCTACTACGAGACTTTACCACCTTTAACCACATACTGCATTCCTAGA
TAAGAAGCACCAGACAAAAATCTAAAGTGCCCTTCTCTCAAAGTCAACAT
GTGAAATATTAACTTTTCCTTTAGGTTACGAGAATTTGCTATTCCCGATT
TTCACAATAATCTGCGTTGGTGGAGGGATGCTTTCTATGTCAGTTTATCA
GGTAAATTGTCAGTCTTTTTTGCCGACTCATATTGCAGTGAATTTGACTT
TGTCCAAGTGTTACCAACACCATTCTAAGCTTTCTAGTGGCCTAGCATCG
GGCCTTTCATTAACATGACACTGCCCTTGGTTTCCGTGGTGTCCGTTTTT
GAAATAGCAGCACTTTGTCAATTCAAGTTCATTTTGGAAGAAACGATAAC
TTATTAAGGTACAAAGTCCAACTATTGCTATGTGGCCGAGCCTTCCTGTC
CCTTTTAGGCATTCCCACCTATCTTTAACTTAATCTCGTATATATTTATT
ATAGGTAGCAAACATCATTTACCGTCAAGATCGTTCAAAGATTATTTGCA
TCATGCATGGTGCTTACGACTCTTCCGCCGTCATGTTACTCATATTTAAG
GTAAA

Coding sequence (CDS) from alignment at sc0000482:71939..74343-

>TCONS_00024243 ID=TCONS_00024243|Name=TCONS_00024243|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0000482:71939..74343- (Clytia hemisphaerica)
GTAGCAAACATCATTTACCGTCAAGATCGTTCAAAGATTATTTGCATCAT
GCATGGTGCTTACGACTCTTCCGCCGTCATGTTACTCATATTTAAGGTAG
TTACGAGAATTTGCTATTCCCGATTTTCACAATAATCTGCGTTGGTGGAG
GGATGCTTTCTATGTCAGTTTATCAGGTCAATCTATGTTTTAGCATGCTT
TGGCTTAGGTTTCGTAGCAATTGATGGTATTCCGAGATGTGAATAACAAG
CATTACCTACGATCATTTTTCGTATTCGGATTATTCGAAGTTCTTTTGTG
CAGTGGTATCACTTACGGATGGGCTAGCATCGTCTATGTTTTCAAAGTCG
AATATTTCTACTACGATTCATTATGTCATGAATCAGCAACTACCCTGAAA
AATAATACAAATAGATCATCAAAGTTAGACTCGGAAGTTCTTGGTGAAGA
TGGTCTACCAGGCTGTTTAGCTCAAGACAAAATATTTAATTTGATATTTA
CAGTCGCTGTGTTTTTCTTTACATCTGTACAATTTCCGACGGGCTTGTTT
TTGGATAAGTTTGGACCAAGAGTGGCTCGAATGTTTGGAGGGTAGCAAAC
ATCATTTACCGTCAAGATCGTTCAAAGATTATTTGCATCATGCATGGTGC
TTACGACTCTTCCGCCGTCATGTTACTCATATTTAAGGTAGTTACGAGAA
TTTGCTATTCCCGATTTTCACAATAATCTGCGTTGGTGGAGGGATGCTTT
CTATGTCAGTTTATCAGGTCAATCTATGTTTTAGCATGCTTTGGCTTAGG
TTTCGTAGCAATTGATGGTATTCCGAGATGTGAATAACAAGCATTACCTA
CGATCATTTTTCGTATTCGGATTATTCGAAGTTCTTTTGTGCAGTGGTAT
CACTTACGGATGGGCTAGCATCGTCTATGTTTTCAAAGTCGAATATTTCT
ACTACGATTCATTATGTCATGAATCAGCAACTACCCTGAAAAATAATACA
AATAGATCATCAAAGTTAGACTCGGAAGTTCTTGGTGAAGATGGTCTACC
AGGCTGTTTAGCTCAAGACAAAATATTTAATTTGATATTTACAGTCGCTG
TGTTTTTCTTTACATCTGTACAATTTCCGACGGGCTTGTTTTTGGATAAG
TTTGGACCAAGAGTGGCTCGAATGTTTGGAGGGTAGCAAACATCATTTAC
CGTCAAGATCGTTCAAAGATTATTTGCATCATGCATGGTGCTTACGACTC
TTCCGCCGTCATGTTACTCATATTTAAGGTAGTTACGAGAATTTGCTATT
CCCGATTTTCACAATAATCTGCGTTGGTGGAGGGATGCTTTCTATGTCAG
TTTATCAGGTCAATCTATGTTTTAGCATGCTTTGGCTTAGGTTTCGTAGC
AATTGATGGTATTCCGAGATGTGAATAACAAGCATTACCTACGATCATTT
TTCGTATTCGGATTATTCGAAGTTCTTTTGTGCAGTGGTATCACTTACGG
ATGGGCTAGCATCGTCTATGTTTTCAAAGTCGAATATTTCTACTACGATT
CATTATGTCATGAATCAGCAACTACCCTGAAAAATAATACAAATAGATCA
TCAAAGTTAGACTCGGAAGTTCTTGGTGAAGATGGTCTACCAGGCTGTTT
AGCTCAAGACAAAATATTTAATTTGATATTTACAGTCGCTGTGTTTTTCT
TTACATCTGTACAATTTCCGACGGGCTTGTTTTTGGATAAGTTTGGACCA
AGAGTGGCTCGAATGTTTGGAGGGTAGCAAACATCATTTACCGTCAAGAT
CGTTCAAAGATTATTTGCATCATGCATGGTGCTTACGACTCTTCCGCCGT
CATGTTACTCATATTTAAGGTAGTTACGAGAATTTGCTATTCCCGATTTT
CACAATAATCTGCGTTGGTGGAGGGATGCTTTCTATGTCAGTTTATCAGG
TCAATCTATGTTTTAGCATGCTTTGGCTTAGGTTTCGTAGCAATTGATGG
TATTCCGAGATGTGAATAACAAGCATTACCTACGATCATTTTTCGTATTC
GGATTATTCGAAGTTCTTTTGTGCAGTGGTATCACTTACGGATGGGCTAG
CATCGTCTATGTTTTCAAAGTCGAATATTTCTACTACGATTCATTATGTC
ATGAATCAGCAACTACCCTGAAAAATAATACAAATAGATCATCAAAGTTA
GACTCGGAAGTTCTTGGTGAAGATGGTCTACCAGGCTGTTTAGCTCAAGA
CAAAATATTTAATTTGATATTTACAGTCGCTGTGTTTTTCTTTACATCTG
TACAATTTCCGACGGGCTTGTTTTTGGATAAGTTTGGACCAAGAGTGGCT
CGAATGTTTGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013607XLOC_013607Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024243-exon-sc0000482-1575043694:73924..74343TCONS_00024243-exon-sc0000482-1575043694:73924..74343Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1575043694:72570..72616TCONS_00024243-exon-sc0000482-1575043694:72570..72616Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1575043694:72343..72419TCONS_00024243-exon-sc0000482-1575043694:72343..72419Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1575043694:71939..72039TCONS_00024243-exon-sc0000482-1575043694:71939..72039Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1510915933:73924..74343TCONS_00024243-exon-sc0000482-1510915933:73924..74343Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1510915933:72570..72616TCONS_00024243-exon-sc0000482-1510915933:72570..72616Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1510915933:72343..72419TCONS_00024243-exon-sc0000482-1510915933:72343..72419Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1510915933:71939..72039TCONS_00024243-exon-sc0000482-1510915933:71939..72039Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1491911889:73924..74343TCONS_00024243-exon-sc0000482-1491911889:73924..74343Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1491911889:72570..72616TCONS_00024243-exon-sc0000482-1491911889:72570..72616Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1491911889:72343..72419TCONS_00024243-exon-sc0000482-1491911889:72343..72419Clytia hemisphaericaexon
TCONS_00024243-exon-sc0000482-1491911889:71939..72039TCONS_00024243-exon-sc0000482-1491911889:71939..72039Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024243-proteinTCONS_00024243-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000482supercontigsc0000482:71939..74343 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0793495	0	0	0.219467	0.0867127	0.627691	0.979395	0.274279	1.01922	1.07172	0.433541	10.5529	11.2965	15.0167	23.2059	9.7125	11.1446	8.04442	12.2195	4.32707	3.4537	2.61235	4.6652	6.20287	7.56315	14.728	16.6707	3.61262	5.06094
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
Blast
[Close]
BLAST of TCONS_00024243 vs. Swiss-Prot (Human)
Match: S43A3 (Solute carrier family 43 member 3 OS=Homo sapiens GN=SLC43A3 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.457e-23
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 2 
Query:  107 GLFEVLLCSGITYGWASIVYVFKVEYFYYDSLCHESATTLKNNTNRSSKLDSEVLGEDGLPGCLAQDKIFNLIFTVAVFFFTSVQFPTGLFLDKFGPRVARMFGGSIYVLACFGLGFVAIGYENLLFPIFTIICVGGGMLSMSVYQVANIIYRQDRSKIICIMHGAYDSSAVMLLIFKV 643
            GL E L  +G+ +GW S+V+VFK E ++ D LC   A  + N T ++               C AQD+ F+LIFT+  F    + FPTG   D+F   VAR+     Y  A   + F + G   LLF    ++ +GG +  ++  Q+ N ++ Q RS II + +GA+DSS+ + LI K+
Sbjct:   16 GLLECLGFAGVLFGWPSLVFVFKNEDYFKD-LCGPDAGPIGNATGQAD--------------CKAQDERFSLIFTLGSFMNNFMTFPTGYIFDRFKTTVARLIAIFFYTTATLIIAFTSAGSAVLLFLAMPMLTIGGILFLITNLQIGN-LFGQHRSTIITLYNGAFDSSSAVFLIIKL 178
The following BLAST results are available for this feature:
BLAST of TCONS_00024243 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S43A31.457e-2334.64Solute carrier family 43 member 3 OS=Homo sapiens ... [more]
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