TCONS_00024256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024256
Unique NameTCONS_00024256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024256 ID=TCONS_00024256|Name=TCONS_00024256|organism=Clytia hemisphaerica|type=transcript|length=601bp
cttacagcatattcttaggttagggtcctaattcagactagatttaacat
ttagtacatacttctcaagcataagatggcatttttgtgaaaaaagtgag
ccttacttgggggtaattgacgatttataattgaaaatgctcgtGTTTGT
CGTGAGAAAATTTTGTCATTTCGTAGAAATTTCTTGTTTTGTCGGCAGGT
ATGAAGGCCTTTTCTGAAGTCGATACCGAGGAAGGCAAACACTACATTGG
TTTAACTGCCAATTCTTTCAAACAACGTTGTTATGGCCACAAACATATGT
TCAGGAATGAAGACAAGAAGAAATCAACCGAACTTTCAAACTACGTGTGG
GACCTCCAATTGAAGGATATCTCTCCTAAATTGAACTGGGAAATAATTGA
CCACGCCCGTCCTTATGTAAATGGCTCAAAACGATGTAATTTGTGCCTGA
CAGAGAAATTTCACATTATGACGTCAGAACTTGACCTGATTAATAAACGT
TCGGAATTAGTATCAAAATGCCGccatttaaataaatttttactgAAAAA
CTTCAAAGCAGTCCCACCGGACTAATGATAGATACATTCcttttatttac
c
Run BLAST on NCBI

protein sequence of TCONS_00024256-protein

>TCONS_00024256-protein ID=TCONS_00024256-protein|Name=TCONS_00024256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MKAFSEVDTEEGKHYIGLTANSFKQRCYGHKHMFRNEDKKKSTELSNYVW
DLQLKDISPKLNWEIIDHARPYVNGSKRCNLCLTEKFHIMTSELDLINKR
SELVSKCRHLNKFLLKNFKAVPPD
Run BLAST on NCBI

transcript from alignment at sc0000482:29672..30272

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024256 ID=TCONS_00024256|Name=TCONS_00024256|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at sc0000482:29672..30272 (Clytia hemisphaerica)
ggtaaataaaagGAATGTATCTATCATTAGTCCGGTGGGACTGCTTTGAA
GTTTTTcagtaaaaatttatttaaatggCGGCATTTTGATACTAATTCCG
AACGTTTATTAATCAGGTCAAGTTCTGACGTCATAATGTGAAATTTCTCT
GTCAGGCACAAATTACATCGTTTTGAGCCATTTACATAAGGACGGGCGTG
GTCAATTATTTCCCAGTTCAATTTAGGAGAGATATCCTTCAATTGGAGGT
CCCACACGTAGTTTGAAAGTTCGGTTGATTTCTTCTTGTCTTCATTCCTG
AACATATGTTTGTGGCCATAACAACGTTGTTTGAAAGAATTGGCAGTTAA
ACCAATGTAGTGTTTGCCTTCCTCGGTATCGACTTCAGAAAAGGCCTTCA
TACCTGCCGACAAAACAAGAAATTTCTACGAAATGACAAAATTTTCTCAC
GACAAACacgagcattttcaattataaatcgtcaattacccccaagtaag
gctcacttttttcacaaaaatgccatcttatgcttgagaagtatgtacta
aatgttaaatctagtctgaattaggaccctaacctaagaatatgctgtaa
g

Coding sequence (CDS) from alignment at sc0000482:29672..30272

>TCONS_00024256 ID=TCONS_00024256|Name=TCONS_00024256|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0000482:29672..30272 (Clytia hemisphaerica)
TTAGTCCGGTGGGACTGCTTTGAAGTTTTTcagtaaaaatttatttaaat
ggCGGCATTTTGATACTAATTCCGAACGTTTATTAATCAGGTCAAGTTCT
GACGTCATAATGTGAAATTTCTCTGTCAGGCACAAATTACATCGTTTTGA
GCCATTTACATAAGGACGGGCGTGGTCAATTATTTCCCAGTTCAATTTAG
GAGAGATATCCTTCAATTGGAGGTCCCACACGTAGTTTGAAAGTTCGGTT
GATTTCTTCTTGTCTTCATTCCTGAACATATGTTTGTGGCCATAACAACG
TTGTTTGAAAGAATTGGCAGTTAAACCAATGTAGTGTTTGCCTTCCTCGG
TATCGACTTCAGAAAAGGCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013616XLOC_013616Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024256-proteinTCONS_00024256-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024256-exon-sc0000482-1491911889:29672..30272TCONS_00024256-exon-sc0000482-1491911889:29672..30272Clytia hemisphaericaexon
TCONS_00024256-exon-sc0000482-1510915933:29672..30272TCONS_00024256-exon-sc0000482-1510915933:29672..30272Clytia hemisphaericaexon
TCONS_00024256-exon-sc0000482-1575043694:29672..30272TCONS_00024256-exon-sc0000482-1575043694:29672..30272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000482supercontigsc0000482:29672..30272 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.02226	0.573432	1.27996	1.10735	0.65872	0.289337	0.491626	0.928495	1.208	0.592175	0.0986722	0.877045	1.00806	0.562587	0.222489	0.712496	0.733905	0.868372	0.840545	0.988647	1.625	1.54292	0.415082	0.684115	0.384088	0.925379	1.53995	0.979162	0.459384	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000305GIY-YIG_SF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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