TCONS_00024174 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024174
Unique NameTCONS_00024174
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length793

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024174 ID=TCONS_00024174|Name=TCONS_00024174|organism=Clytia hemisphaerica|type=transcript|length=793bp
CTAGTAGAAAATTACACTCTAATAAAAAACAAGGGAATATcgatccccat
tgagttttggtCTCTTATTTTTAACCCCACTGGTCGACAaaattccaccg
ggtctgtgagaaggggggtGTATTGATATCTTACTTGGAAAAATATTTAG
CTCGGTGTATTTCGAAAAAACTTTCCACTCTGCAAACAAACAAACCGAAT
AACAGGCTTTTCACGGCGCGGTCGACTTTTCAGGGtctggtaatgaattt
acaagaAAACATCTAAAAATGGACTCCGTTTCTTTCCTTACACGACTATT
AGTTATAACTCGTCGATAAACTATAGAATCAACCCTCGTTGAAGTTTTTC
TCCCCAAAATCAATTCTGTTTTCCTTGTTACGTCATTCCATAGGATCTAT
AGGTGGAAGTGTTGGATTGTGTCTTGGATTCAGTTTGATCACGGCTTTCG
AATTCTTATTCTTTATCTTTGATTACGTCATGGTACCGTGCAGAATGAAA
TGATAATAATATTATCCATCAGGAAGGTGATCTGCGGAATAGCATACCgt
cgcgaatctaaaaatagacattgatttttatgtttgactgaaatccaatc
ccatcaccctttgcgtttattacgcttgcacgcaaattacactcaattac
aaagaacaagtaataactttcacgacttttgaattgagacgaaaaggatt
gtgggattgaatttcggtcaaatgagagaagtaataatcatGACGTTTGC
GCGACGAAGCGCTATTGAAACATgattctaaagtctattcacg
Run BLAST on NCBI

transcript from alignment at sc0000478:80314..81106+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024174 ID=TCONS_00024174|Name=TCONS_00024174|organism=Clytia hemisphaerica|type=transcript|length=793bp|location=Sequence derived from alignment at sc0000478:80314..81106+ (Clytia hemisphaerica)
CTAGTAGAAAATTACACTCTAATAAAAAACAAGGGAATATcgatccccat
tgagttttggtCTCTTATTTTTAACCCCACTGGTCGACAaaattccaccg
ggtctgtgagaaggggggtGTATTGATATCTTACTTGGAAAAATATTTAG
CTCGGTGTATTTCGAAAAAACTTTCCACTCTGCAAACAAACAAACCGAAT
AACAGGCTTTTCACGGCGCGGTCGACTTTTCAGGGtctggtaatgaattt
acaagaAAACATCTAAAAATGGACTCCGTTTCTTTCCTTACACGACTATT
AGTTATAACTCGTCGATAAACTATAGAATCAACCCTCGTTGAAGTTTTTC
TCCCCAAAATCAATTCTGTTTTCCTTGTTACGTCATTCCATAGGATCTAT
AGGTGGAAGTGTTGGATTGTGTCTTGGATTCAGTTTGATCACGGCTTTCG
AATTCTTATTCTTTATCTTTGATTACGTCATGGTACCGTGCAGAATGAAA
TGATAATAATATTATCCATCAGGAAGGTGATCTGCGGAATAGCATACCgt
cgcgaatctaaaaatagacattgatttttatgtttgactgaaatccaatc
ccatcaccctttgcgtttattacgcttgcacgcaaattacactcaattac
aaagaacaagtaataactttcacgacttttgaattgagacgaaaaggatt
gtgggattgaatttcggtcaaatgagagaagtaataatcatGACGTTTGC
GCGACGAAGCGCTATTGAAACATgattctaaagtctattcacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013567XLOC_013567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024174-exon-sc0000478-1491911889:80314..81106TCONS_00024174-exon-sc0000478-1491911889:80314..81106Clytia hemisphaericaexon
TCONS_00024174-exon-sc0000478-1510915933:80314..81106TCONS_00024174-exon-sc0000478-1510915933:80314..81106Clytia hemisphaericaexon
TCONS_00024174-exon-sc0000478-1575043694:80314..81106TCONS_00024174-exon-sc0000478-1575043694:80314..81106Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:80314..81106 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.148663	0.328512	0.0789791	0.0858667	0	0	0	0.0428471	0	0.0552465	0	0	0.174884	0.0879369	0.196252	0.271961	0.0997265	0.277327	0.292311	0	0.091623	0.419555	0.124433	0	0	0.138935
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024174 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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