TCONS_00024155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024155
Unique NameTCONS_00024155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024155 ID=TCONS_00024155|Name=TCONS_00024155|organism=Clytia hemisphaerica|type=transcript|length=411bp
CAACaacttagtaccgacccccctcCTGGTCAGAATCCACTCTGCAAGAA
TTGTAGCCTGGTGTCCTAGAGATTGAGCTGACCTGAAGAGGTAAGCACCT
TTGCAACTCTAAATTATTTCTNCGACCCCCCTCCTGGTCAGAATCCACTC
TGCAAGAATTGTAGCCTGGTGTCCTAGAGATTGAGCTGACCTGAAGAGGT
AAGCACCTTTGCAGCTCTAAATTATTTCTACTTTCATGTTGGGATTTGCA
TGCTACAAAAAAGGATTTGTAAAAGAAAACTTACCCTGCCAAAACAGTCA
TAATGAGCACAAATGATGTCTCCCTTACCACCAACCACAACCCATGGTCA
AAGATCTTTTTCATTGAAGGCTTCTGAGTGTGAAACAGCTGTTGTTTGTT
GTCTGGTGATG
Run BLAST on NCBI

transcript from alignment at sc0000476:205324..205734-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024155 ID=TCONS_00024155|Name=TCONS_00024155|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000476:205324..205734- (Clytia hemisphaerica)
CAACAACTTAGTACCGACCCCCCTCCTGGTCAGAATCCACTCTGCAAGAA
TTGTAGCCTGGTGTCCTAGAGATTGAGCTGACCTGAAGAGGTAAGCACCT
TTGCAACTCTAAATTATTTCTNCGACCCCCCTCCTGGTCAGAATCCACTC
TGCAAGAATTGTAGCCTGGTGTCCTAGAGATTGAGCTGACCTGAAGAGGT
AAGCACCTTTGCAGCTCTAAATTATTTCTACTTTCATGTTGGGATTTGCA
TGCTACAAAAAAGGATTTGTAAAAGAAAACTTACCCTGCCAAAACAGTCA
TAATGAGCACAAATGATGTCTCCCTTACCACCAACCACAACCCATGGTCA
AAGATCTTTTTCATTGAAGGCTTCTGAGTGTGAAACAGCTGTTGTTTGTT
GTCTGGTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013557XLOC_013557Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024155-exon-sc0000476-1575043694:205324..205734TCONS_00024155-exon-sc0000476-1575043694:205324..205734Clytia hemisphaericaexon
TCONS_00024155-exon-sc0000476-1510915933:205324..205734TCONS_00024155-exon-sc0000476-1510915933:205324..205734Clytia hemisphaericaexon
TCONS_00024155-exon-sc0000476-1491911889:205324..205734TCONS_00024155-exon-sc0000476-1491911889:205324..205734Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000476supercontigsc0000476:205324..205734 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.171269	0.19886	0	1.65795	2.43311	0.225803	0.845577	0.296004	0.733298	0	0.311775	0.700846	0.611865	0.897569	0.642153	1.61821	0.405415	2.48519	0.617434	0.421531	0.68981	0.201377	0.39592	0	0.168293	0	0.364704	0.424079	0.480235
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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