TCONS_00024084 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024084
Unique NameTCONS_00024084
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024084 ID=TCONS_00024084|Name=TCONS_00024084|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CGCCTGGTACAGTCTAACAGTGGTCTGGTGTCTGGTGGTTCCATTTGTCT
TTTCcattaaaataaatttccttttATACTTTCAGAAGGAAAACCTTTGC
TAAGGGAATTTGAATCAGTTCTTGGAGTACATCGAGCAGTTGGAAAATTT
CTTGTTAATAccatgagattgggtaactGCATCAATGGAGACTAACAATG
ACCTGGCTGgctattaaaatacaaagttataatcaaaacaaaaaagaaga
aaaaatacaacaaaacaATGGCAGAGAATATAGGAGAGGAAGAATCGGAA
GTGAAAAGTATCGAAGAAGAATTAGCTCTTGACTTAAAATCTTTCCTCAC
AGTTGATGTTTCAAAACAGAAAGAAGAAATTGACACTTTGATATCTGGCG
TCCTTGCTAAGCTTGAAGAATTTTGTCAAGTCATTGAAAATaTACGGACA
GAATCGAAAGATGTGTTGTTTACTATAGCACCAGTTCTTCATGAAAGATG
TATGGAAACAAAACCCTTATTTCAACAGATTGATGATTTAGAGCGTTTCA
TAGGAGTTGTTCATAACGCCGTAGATGATGCcgaaaataaagtcaaaatt
gCTGAGAAAGAATTGGGCAGTAAAAATATCAAGAAGATTCTTCATAATGT
TCCTGTACCCAAGTTTCTACAGCGAAAGAAAGAAATTCAACCTTACTTGA
AGCGAGAAGTTCAAGGGAAAGATTACGAAAAACCGATCGGCTTCAAAACG
GAAGATTACTTCGAAGCTTCTTTCCACTTACTTCCCGATGATCAATTAGT
GAGTAGTACTGAGGAAGAATCAAACGATTGATCTGATTGGTGCGTTGCTG
GTCATATGACGAGAATCTAGTGATTTGATTGGGCGATGACATTGTTATGT
CATGATTTAAAATCTTAATGTTAGCCCTTCAGAGAGATCCCCCAATGAAA
TTAAACCATAAACACTTTGAAAGTCTCTGTCAGTATTCATTCTGGAGAAC
GATAGAACAAACAAATAACACAGCTGTGGAACTGGTCCCGTAACTCTGGA
ATGTGTTAAATGGGAGACATACAATTAGATAAATTGACATTGGACTAAAT
TACACAAGATGTTATTCGTGTTACCAATAATTAAGAATTTTATACAAACA
TCCACTCGACAattcattttccttttcttctGTAGAAGtagataaaaatc
taaaatttatttttctaatttattgACATCTGAATTTTATACAACGGAAA
CAAATTAATCATACAAAGAATtctcg
Run BLAST on NCBI

protein sequence of TCONS_00024084-protein

>TCONS_00024084-protein ID=TCONS_00024084-protein|Name=TCONS_00024084-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
MAENIGEEESEVKSIEEELALDLKSFLTVDVSKQKEEIDTLISGVLAKLE
EFCQVIENIRTESKDVLFTIAPVLHERCMETKPLFQQIDDLERFIGVVHN
AVDDAENKVKIAEKELGSKNIKKILHNVPVPKFLQRKKEIQPYLKREVQG
KDYEKPIGFKTEDYFEASFHLLPDDQLVSSTEEESND
Run BLAST on NCBI

transcript from alignment at sc0000474:70764..83692-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024084 ID=TCONS_00024084|Name=TCONS_00024084|organism=Clytia hemisphaerica|type=transcript|length=12929bp|location=Sequence derived from alignment at sc0000474:70764..83692- (Clytia hemisphaerica)
CGCCTGGTACAGTCTAACAGTGGTCTGGTGTCTGGTGGTTCCATTTGTCT
TTTCCATTAAAATAAATTTCCTTTTATACTTTCAGAAGGAAAACCTTTGC
TAAGGCAGGGAAAATAGTTTTATAACTACTACTACCGTGAGATTGGGTAC
TTGCATCAGTCTGGTCCTGGACTGGATCAGTGCCAGTGCAGTTAGGGAAA
CCATCCATGATCCTGCCATTCTATAAGCCAGCAAAAACTAAATGCCACTT
GTAAACTTAAGTTTCTTACTATTTTCCATCAATAACAACCAAAAACATTG
CTACTTCCCAAAGCTGGAGACCAAANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCAAAGCTGGAGACCAAAACAAATTATCTTCCAAGATT
ATGGCGCCCTTTTGGATCTATTGTTATGGCCATCTAAAATGGTGGAAAGA
GTTGCGAAAAGACAGGGGCACCCGCTAGCTTCGAGGGTGGTAACGCCAAA
ACGCCCAATATGATCTTCCAACAAAAAGCGAGTTACTAACCGCGCGAGTT
ACGTCATACAACTCCACCACAGCGCACAACGAACGGTGTTTTAGTGAATA
TCAATAATTATAAGAATATCTTATGTGATTAAATTCAGTAAACTTTGAGT
GCTTCATTGAATATTAAGAAGATAAGAAGATAAAAAATGCGCTGGATAAT
TTCTATTGTAACAGTTTGGTCAATCATTGCTGAAAGTTTGAAAAAAATTT
TCCGACGCAAAAAAAAACTTCAGCCAATTAAAAGCACAGTGTGCTTATAT
TTACTAGCTATGTTTGCTACATCGTGTAGGCTAAAAAAAGTGCGAAAAGA
CACGAACGTCATTTTTTAATGAGTGTTGTTATACCTTGTTACCTTGAGCT
TGTTTCGTAATATCTTTACGCATCCATCCTGTGAGGACCGATGTAAATTT
TCATATTGATGATGCTGTTTGTTTCAGCTCGTCTCATCATAGTGTAGCCA
GTCACGAGTGGCTCGTCGGGAACTGTAAAATGATTTTTTAGATCGCGGTC
GCGTACAGGAACTCGCCAAATGTTCCTAACTGCAGTGGATGAGGCTAACA
TGCATAGCCCTCAAATGAATGACCTGGCTGGTCATTAGAACCAGACGATC
TCAATCGAACGGAATCGACGATCGAACCAGTCAAACCAAATCGAATGCAA
TCGACCGATTGAAATTCGATTGTCGAACAACGCAATCGAATCTCAATCGA
ATATTACCGCAATTTTCAGATTCGATTGATATTCGATTGCGTACGACCCT
CGACATGGCCCGAGAATTCTTGGGCATCTTCGGGCCATGTTCGAGCCAAG
AGACCCTATCAATTCTTTTGGCCCGAACATGACCCAAGTCATTCGGGCCA
TGTTCGGGCCTCCTTTTTCATAATGCTTTTAAGCCTGTCTGGCTGGGTCT
CCATTGAGTCTAATCTAAGTACGGAGTAGGGGGAAGTACTGAATCCTATA
AATCTTATAAATTCCATATTTAAATTGATTCAGCATGTGCAGTCAAACAA
AATAGTACAAAATAAGATTTGTCTGTTTTGTTTATCGCTCATATCAAAAA
AACTTTACAAGCTTCCCATGGACACGCTTCAGTTTAAAACCAGGACCAGT
TTACTAGCAAATATTTCCACCCTAAGTATATTTATAACTATGTTTTCATA
CCAAATAAGACATTTAATATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAACATTCATATATTTAATATAATTAAGAGAA
ACCAAGTTTTTCTCAAAGAAAATGTTAAAAAAATTCAGTATTGCATTTAC
ACGCCTGTTTAAACAGATTTAAATCATGTTTTCAAAAATTGGCCCGAGTG
TGGCCCGTGCGTGGCCCGCGTGTGGCCCGAACACGACCCAAATTCTTGGG
CCAGCTCGGGCCATACTTCGGGCTTTACGCGAATTCCAATAAAAGTTTTG
GCCTGAGAATTCTCGGGCCATGTCGAGGGTCGTGATTGCGTTCGATTGAT
GTTCGATTGGGTTAGATTGCGTTCGATTATCGATTCATTGACCCCCGGAT
TGTTCATCGCAGTGTGAGTTGTAAAAATAATTACCTTTTATTCTGGATCA
GTTGCTCATGTTTAAAACGATAACAGTTTTGTAATAAAAGTGACTTGTGC
GGGAAAAATACGTAACAACCTGGGCTGGTTTCCCTCAAAAAACAAACAGA
CTAAATTGCAAAAATGGCGCAAAGTTGAAAAAAGGGCGGATGCGGTAGCA
ATTAATTTGAATAACAAACATCGAATCAATGAGGCGACAACTATTACCAC
CCATAAGTCTGGATGTTTATTTACAGAAGGCCCGCAATCAAGCCAAGTGC
CAGTGTAAAGTAATAAAAACCAGGTTTGATTACGTAACGTTTCAAAATGA
GCACGCTCGTACACAGACCTCTTTTATATTTTCGTGTGCTTTGGAAAATC
AAAACATCTCATTACTTTTTATGATGCTGTTACTACTGTTGTCATTTATG
TGACGTTGTGCATATGGCTATAAAAAAATATGTTTTGTTATAAGAAGCAA
TTATTGTTATTTGGTTCAATTGGTTCAGTGTATCAAATCTCTCAGTTTAG
TTGACACTTTGGTATCTTCGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCGTTGCGTCACAGCAAAAGGTTTGTTTTTATTTTAGTTTGTA
TCTTTGAAAGACCCCATCGGATTTAGGCAGTGGTGTCGGCTTTAGGACCT
CTCACGGAATGGTAGAGTAGAGCTGCGAGTAGAGCTGCTTAGTTGTATTT
TAATGACCAGCCACGTCATTCATTTGAGGGCTACCGTGAGATTGGGTAAC
TTGCATCAGTAGAGGCTAACATGCCAGCATAGCCCTCAAATGAAAGACCT
GGCTGGTCATTTAAATACAACTACGCAGCTCCGCTCCACAAGTGTTATTT
GTTATTTGCATAAGCCAAATCGCGTATTACGAACAACCTCTAAATTGCCG
AGTACAAGAGAAAAAAAATCGAAATTCAAAATGGCGGCCAAGCCCACCCT
GATAACTATCAAAAATCTTTGTTTTTCAATCAGCTATTGCAATAATTCTA
TGAAATAATTTGAAATAAAAAGTAAACGAACCTTGAACCTTTCATGAATC
CAAATAAATAAAGGTATTCATCTAAAGTGAAGATTACATTTCAAAATAAA
ACAATTTCCAAACCAACCTTAAGTCAGTGTCTGCCATAAGTTAAGAAAAT
GAGATTATCATATAGCACGGAGGAGAGAGATAAGAGAGATAAACCTTCCC
TTAGCACAGGGAATAGGCCCTATCCTAAGATAGAGATCACAGCGCTAGGT
AGATAAAATAAAAAGCGAAAAAAGGAAAAATTATGCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGATGGCAAACCACTCCAACACGATCAACACTCCATCGTCATT
GTGAATGTGATTTTTGTTCTTCTTGGGTGTGGTGGACCTCTCTTTAGTGA
AGGCTTACCACCACACCCTTTATTTTAGGTTTTGATTCTATAAGAAGAAC
TTATTCACTAATTCTTAATGGAGTGAATTTTTTTATTATTTTATTTTTAT
CTTTTTTATCTTACATAGCACGGAGGTTTTGTTTTTAAAAACAAACTTCA
AAATAACATTGTTAATGAACTTCTTACTTAAAATATCACTTACTTACATA
ATTTATTTATGATATAACACCCTTTTCTTAAATAAATGGCCTCTTAAAGT
CTTTTATGTTTGCCGCAAGAAGGGAGAAACATTTAATTTGACCCCCGGTT
TTTTCTCTCCTTTTCTAGCTAATTCCCGCGCGTTAGTGTAGATACAACTT
TAATCCGGGGAAATGAAGCGTTTTCATTGGTCTAAAATCACGGATGGTCA
CGGGACCAGAATTTTTATCCAGGGAAATGCCGTGGCCGCAATGTTTTGCT
TTAGTGAGATTGACCATTTTGTTGTTTAGATTTGAGCGGGCAAAATTTCT
GTACAAACCAAAATATGGCTTCGTTGGAATACCGGTTGAAACACTTGTGG
CTGACAGCATTACTCTCCCATTTTTGTTTTGTTTTGATTTAATTTTGTAT
TTTAATGACCAGTCAGGTATTTCATTTGAGGACTATGCAAGTTAGCCTCC
ACTGATGCAAGTTACCCAATCTCACGGTATGCATTTTTGCCTCCACTGAT
GCCAGTTACCCAATCTCACGGTATCTTTTAAAATTTTACTAGTACTAGAC
AATTCCTGTCGTCGCAAACGCCGGTTTTATAGCTTGAGCATCAAAAAGCC
CTTAGGATATATAAAGATGGTATTGTTGATGCTCTCTAACTTTATTTTAA
AGGGAATTTGAATCAGTTCTTGGAGTACATCGAGCAGTTGGAAAATTTCT
TGTTAATACCATGAGATTGGGTAACTGCATCAATGGAGACTAACAATGAC
CTGGCTGGCTATTAAAATACAAAGTTATAATCAAAACAAAAAAGGTACAG
TAGAGCTGCGAGCGGAGCTGCGTACCGTAAGTTGGTCTAACTTCAACATC
CCTCGTCTAATTCCGACACCCTTCTTCAGAGACAGGAATAATATGAAAGC
TTGAATTGCTGATTGAAAAATGATTATATCCTCTCTGACCACTGAGCAAG
AAAATAGTTTTGATTTTTTCTATCAATTTCAGCTGATGAAGAGGGTGTCG
GAATTAGAGGAGGGATGTCGACATTAGACCAAGTTACGGTAGTTCATTTG
TTTTGAAATTTTGCTGCTTTGATTGGTCAGTCATAATTGATGGCTATGCA
AGTTTCCCTTCACTGATGCAAGTTACCTGGCTTCACAGTACTTTTTTGCG
CTTCAAATCGAATGTGAGAATATGACTTGAAATCTTCACAATAAAATTAG
CTTATAAATAAACAATAAACTGTCATCGTGAGAGTTTCTTCAAGAAGTTT
GAAGGCAATTTCAATTTAATGGAAAACGGGAACTTATTGAGCAGAAGTGT
CAAATTGAGAGCGTCAAATGTATCATCAGTGTATAAAAATTTTTGCTATA
TTTACAAATTTGAGGTCGACATGACACGCCTTGAAAGACCAAATAATAAA
TACTTTGATTCCAAAACAATCATGAGCATATCCAAACTTACGGGACAACA
ACTTATATCCACTTCTTGCGCGAATGACCTCCGTTTTCCGCGCATCGACT
ATTCAAAAACTTAATTTTTACTAACTTTTTGTAGAAAGTGCTACACCTTC
TAAAATTCGAAAATTTACGTCACAAAACCTTTTGGTTAATTGACGTCAGA
ATTATTTTTGTTAAAAAGTCACTGCAGGGACTTCTTCGATTTGAATGTAA
AATCATTTTTTAGACGGAGGTTTTATCTGAAGGTAGTGCTAATTTTCGTG
CTCAATCATAGATTAAAATAAAAATTTTAACATAAAATTAAAACCACAAC
GTATTATCAACTGCTTTTTCAAAAGACAAGATGTTTTTTGTCTCAAAACT
GCAGGAAACCCCATTTTCATTCTGGAATTAACCCTCTGACAAACTATTTG
AAACCACACTTTTTGATAAATAACGAGATTGCTCACGGGAATTTTTTGAC
CCGTATTCTGCGCGATCGTGTTTAAACACCGCGCATGTAAGCTCTGTGAA
TTCTGTCTGCTGTATATGGGTACTGTATGCACAGTGCAGCTGGAACCTTG
ATATTCCAGGATTAGAAAAAGCTATACCTGTTATCTTTTTTCTTTAAAGA
ATCAACAAGCTATCAACATCGATAAATTACACACATTTCCTCAGAAACTT
TCAAAATTATCTGCCATTATGACTTTCTTGAAGCCATTCTGAAATTAACC
AATCGGTTTGTGTATCGGAATTCCTATGGGACTTTCTGCTATTCGTTTTT
TTTTCGGAATGCTGAAAAACTCCAATTTCGATTTCAGTAAGGTAAAGAGG
TTGTGAGATTTGGGTTAGCGAGGCAAAAATTGCTAAAAAGCTGGTAAAAT
CAAAATCCTCAAAATCGAAGTTCCAGCCTCACTGATGCAAGAAAAAGCTT
CTCTTTTCACTCTTTTGAGACTTTGACAGGGTAAATAAAATTATACAGGT
CATGGCAAAAAATTATTGTATTATTAATTATAGTTCACAATCACCTCTAG
TGGCCTCTAGTAGATAAAGCGGTGAACTGTCAAGAATGAGAGTGTTATTT
TTGAGAGTTCACATTATATACGGTGCATTGAAGTTTGTGTTATTTTGGCA
GCATTGACCAAACTTTTTCTGGTTTTATGAGTGTCTTATTGATATTTTTA
AAAATTCCCGTTATAATTTCAAGAAACAAAAATTTAGTAGTGTAACTAGT
TACTAGTAGTTTAACTCAAGTACAGTATTTCAAAAAGGATCAGGTTGGTT
AGCAGGTGGGTGGAGAGTCAAGAGTCAAGAGTCATGACTTTCTCTTCTCT
TGAGAATCCAGTATTCCACAACTTTCAACTAAAAAAAATGCATAAAAATC
GACTTTCGTCTTTTTTTATTATCTTGCAAACACTTTTTTCAGGACCACAA
GTGAAAATAAAAGCAAAACTGACTGTATATGGCGCGGGCTAGAAATTCCC
GTGAGCAATCTCGTTATTTATCAGAATGTGAAACCGCAGCTTTCCTACCA
TCTTGTGCTACACACATTTTTCATAAACTCATTTATTATAGTAAGATACA
AGCGTGTAAACCCAGATGGTAGCTAATAGTTTAAGGGGAACTAAACATTT
TTTTGAAAATACCTAAATCACGTCACACACTTCCAAGGAATGACCTCTGA
AAATGTTTTTCTCTAAAAACTTCTCTATCAAAAGATATAGCTCTTTATGT
TTACAGAAAATCTAATCTTTTTAAAGCAATGCATATTTTGTTAGGGGAAT
AGGTCGAGCCATCTGTTTGACGTAAACACGTTCAGAAAGTAATTGGAATT
TTAGTTGATAGAGTACCTTTAACTTTTTTAGTGTAGCCATAACTTTTTAT
CTAAAAATGGTTTAACCAAGAAATAGAATTCGTTAAAAAGCCATTTTTGA
GTGTAGTATAACTATGTCTGAACTATCGAAAACAAGTGAGGGAAAATGAT
TTTAGAGACGATTGAAAAAATTGAATTTTTTATTGGAATAAGCTGAAAAC
CCCAAATTTAGTCCACATAAAACTGAATCCTTCCTGAAATCAAAAATGAA
TTTACTATCTTCCTATTATTTCTTGTTCACGAAATATCAAGCTTTAAAGT
CGATGAACATACACAAAATTCATAGAAAATATGAACGATATGACGTCACA
AACATGTGTAAAGTGGGGGTTCATTTTAAACAAATTATATGTTTTTTAAA
GAAGGTATACAAAATAAGAAAGACATTGAGAGTGGAAATTATATATTTTC
GAAGTTATACTGTGTTGTGTAGTTATTGGAAACAAAAAAGCATGACCTCG
AAAAATGTTTAGTTCCCCTTTGAATCAATAAATTGGATTATATTGAAGTT
ATCGATAATGATTGAAGTAATCGATTTATTTGAGTATTTGATCACTTTCT
TAACAACCCTTTGAAAAAGACTTGACAGTCCTGGCAATTGGCGTCGGCAT
ACGGCAAATGCAGAGGCAAAAGCTGACGTAAATTGGATTATAGTGTGTTT
GCGTCGGCATAAAAAAATGCCGAGGCAAATTTTTCAAAAGACTTTGGGGT
TCATGAGAGGCACTCTTTGCGCAGGAGTGTAACGTCCCCCGACCTCCCTT
TAAATTGGGAAAAATGCCAAGGCAGAATCCTATTCTGCCGAGGCAAACAG
CAAATTTAGCCATTTGCCTCGGCAAAAAAATGCCAAGGCGAAAAAAATTG
ATTCCCCTAGGAGCCGTCGTACGCACTAAAATCAGATAATCAGAAAATCG
GATACCCTCTCCCCCCTGTACGCAAGCGTATGCAAATGGCTATACCCCCT
GGTAAGTACATACTTTTCATCCACCCCCCCCCCCCCCCGGGCCGCAAGCG
TATGCAAATGGCTATCCCCCCTGGTAAGTACGTACTTTTCCCCCCCCCCC
CCCCCTCGGTTGAAGAAAATTTTCGATTCAAATCGTTTGGTTCGGACCTT
TATTTCATACATTAAACTCAATGTTTATTAAGAAACTTCCTTTTCCTTGA
TGCGTTATAAGAAGCGTAAAAATCAACAAAAAAGCAATCAAAAAGGGCTA
TGAAAAATTTTTCTCTACTTACATCCATTTTCCTTTGACCCCTCCCTTCC
CCCGTATACAGGCATACCCTTTTGAGAAGACTCCCCCTCCCCCTTAGTGC
GTATGTACTATGTGGACCCTACCCCTTAGTAGCTTTTCAAAAATGTGTAA
CAAGTGCTTTGACTAAAAAAGTTGAACAACCTAAAAAGAATCAAACTAAT
CTCCCCCTATTATTGTGAGATTTTCCTTCAAAAATACAGAAAATCGGTTG
TAAGATTTTCCTTCAAAAATCACAGAAAATCAGATGTGAAGTTTTTTACC
AAAGTATAGACAATCAGAGGTGGCATTTTCTTTAAGAATTTCAGAAAATC
AAATGTGAGATTTTCCTTTAAAAATACAGAAGACGAAATGTAAGATTTTC
CTTTAAAAATACAGAAAATGAAATGTGACATTTTCCTTCAGAAATACGGG
AAATCATATCTGAGATTTTTATTTCAACAAGACAGTCAAATAAAGTACTG
AAAATCATTTACAAATTGATTTGTTTATGTTTTTATTTTTATAGAAGAAA
AAATACAACAAAACAATGGCAGAGAATATAGGAGAGGAAGAATCGGAAGT
GAAAAGTATCGAAGAAGAATTAGCTCTTGACTTAAAATCTTTCCTCACAG
TTGATGTTTCAAAACAGGTCTTCTTTATGTTACGCTTTTTTAATTTGTTT
ACATTTTGTTTTATGCTGTTTCATATATTAAAAGTCAACTAAAATTGACA
ATGATGAATGGCAAAAATGAGCAACTCCATTTACTGCAACAGGATAGTGA
TTTGAAATAACAAAAGAAGCCAGAATTTCAATAGTATTTGTTATTTCTCT
ATCATTTGATTTATAGAAAGAAGAAATTGACACTTTGATATCTGGCGTCC
TTGCTAAGCTTGAAGAATTTTGTCAAGTCATTGAAAATGTAAGAGCATGA
AATCTGACTTATAAGTGAGAAAAAGTGTAAAAACATTTCAAAAAAGTTGT
ATCAAATTAAAACAATTCTATACAGAAAAACTCATGTTTCACTATTTTGA
TGACTTTTACGACTCAGTTAATGATCTNGCATGAAATCTGACTTATGAGT
GAGAAAAAGTGTAAAAACATTTCAAAAAAGTTGTATCAAATTAAAACAAT
TCTATACAGAAAAACTCATGTTTCACTATTTTGATGACTTTTACGACTCA
GTTAATGATCTTAGCTGATTTTTACCGAATAAATCTAACAAAAGGAATTA
TAGTAAAATATAGGAAAACAGTGACTTTGAGCAATTTCTCAATAAAATTT
CAGTGAAAAGTGTTTAAAAATGCTTATTGATATCTCTTTTTTGACGTATT
TTTGGATATTTTCGAAAGTGAATTTCGACTTTGAAAACTTACAACTTCAN
GATGAATTCGAGCAATTTCTCAATAAAATTTCAGTGAAAAGTGTTTAAAA
ATGCTTATTGATATCTCTTTTTTGACGTATTTTTGGATATTTTCGACTTT
GAAAACTTATAACTTCAGAACTACTGAACCAAATTTGAAAATAATTTGCC
AAATTTTAAGTTTGCTTTTTGCCCTTTTCAATCAACAAATAATTAGCATA
AATTCACCTTATTTCGGACACAGCCAGCCATCGTCAAACCGTTATGCTTT
TTTCTGGGTCACCCGGTAGATCGCCTTTAAAAACCTCCCATTAAATCTTG
CTGACTCACCAGTTTAAATGCCTATTTTTATTTCATTAGATACGGACAGA
ATCGAAAGATGTGTTGTTTACTATAGCACCAGTTCTTCATGAAAGATGTA
TGGAAACAAAACCCTTATTTCAACAGATTGATGATTTAGAGGTAAGAAAC
GAAAAACTTTTTGATTGGGTTGAATTTCATGCTGCATGCGCACTCGTTTT
CATTGAAAAATCAAATTGCAGGATGATTGTAATTCAACTAGTTTTTAGAT
TAATCCTCGATACACTTTACAGTACAGATGATTCGCTCTTGATTTAAAAG
CTAAACTTGTATAAAGATTTTATGTACTCCTCTTATGACAGGATGCTTTT
TTTGAACTAGCTTGAGTGAGTTAGTGTATGAGTTTGTTTACACAAGTCAA
TGTTGCGTTAGTTTTACATCATATGTGATTATTTTTACACCACTGAATGT
CGTCAGAAATTTCATGTCATCATAAAGTTATCCATAATGAGCTCTTAAGT
GCATGTTATCTTTTCATAAATTAATTTATAATTNGTTATCCATAATGAGC
TCTTAAGTGCATGTTATCTGTTCATAAATTAATTTATAATTTAATGACAT
TTGAGTTTTTTTAATCAAATGAAGCACACACACACACTCTTGTGTTCATA
ATTTATTGAAAATTAAATCTGCCATCTAAATATTGTATTATCTAACCTAA
TCCTACAATGTCAGTTATGAAAAACCAAATCCGTAAGGCTCGAGTATTTC
CTTTTTATAAGCTTCTTAAAAGTAGTCCATTATATCATCTAGGTTTGATT
GTAGCGCTATGATCTCTGTCTTATGTTAGAGTTTATTATTATACTGAGAG
AATGTCTGTTTGCTGACAAAAATTGCTTAAAATATAGCCCTTCATAGCAG
TTGATATATTATTCAGGTTTGATTATAGTGTTATGATCTGTCCTAGGTTA
GATTTATAGTGCCAAGAGAATGTCTGTTTGCGGACAAAAATCCCTTAAGA
TACATTCCAATTCATTCAAATTTCAGCGTTTCATAGGAGTTGTTCATAAC
GCCGTAGATGATGCCGAAAATAAAGTCAAAATTGCTGAGAAAGAATTGGG
CAGTAAAAATATCAAGAAGATTCTTCATAATGTTCCTGTACCCAAGTTTC
TACAGGTGAGGGTGGTATACTGTTGCCTAAACCATAAAACTTTTTACACG
ATTGAACCTTGATTGAACCTATCCCTACATTTCTGATAAAGAGTGAATCG
TGCTTTGACTGAAAATCTGACAAACTGAGTTTATTGAGGGATTTCAGGAT
TTGTTCAGTCGTAGTTTTATAATATATTTGGGAATAAATTTTTGCTGTTA
TCAAATACACCCCCTTCTCACAGATCCGGTAGGATTTTTTCAGCCAGTGG
GAATAAAAATAACGGACTGAAACTCGATGGGAATTGATATTCCAATTATT
TTTTTTGGCTGGGGATTCCAATTATTTTGTTTTCAAGTCAGAAAATTCAG
TGGGCATCATATTTTACAGTTAGGATAGCTTTATTTGATTATTTTCAGTG
GGGACAAAACTTGGAGAATAATTTTCCACCGGGGACGATATTTTGGCCAA
TTTTACCAGTGGGTCTGTGAGAAGGGGGTGTTCAAATGATCTTTTCTCGC
ATCATTATATCCGGTGTCTTTTCAGCGAAAGAAAGAAATTCAACCTTACT
TGAAGCGAGAAGTTCAAGGGAAAGATTACGAAAAACCGATCGGCTTCAAA
ACGGAAGATTACTTCGAAGCTTCTTTCCACTTACTTCCCGATGATCAATT
AGTGAGTAGTACTGAGGAAGAATCAAACGATTGATCTGATTGGTGCGTTG
CTGGTCATATGACGAGAATCTAGTGATTTGATTGGGCGATGACATTGTTA
TGTCATGATTTAAAATCTTAATGTTAGCCCTTCAGAGAGATCCCCCAATG
AAATTAAACCATAAACACTTTGAAAGTCTCTGTCAGTATTCATTCTGGAG
AACGATAGAACAAACAAATAACACAGCTGTGGAACTGGTCCCGTAACTCT
GGAATGTGTTAAATGGGAGACATACAATTAGATAAATTGACATTGGACTA
AATTACACAAGATGTTATTCGTGTTACCAATAATTAAGAATTTTATACAA
ACATCCACTCGACAATTCATTTTCCTTTTCTTCTGTAGAAGTAGATAAAA
ATCTAAAATTTATTTTTCTAATTTATTGACATCTGAATTTTATACAACGG
AAACAAATTAATCATACAAAGAATTCTCG

Coding sequence (CDS) from alignment at sc0000474:70764..83692-

>TCONS_00024084 ID=TCONS_00024084|Name=TCONS_00024084|organism=Clytia hemisphaerica|type=CDS|length=2820bp|location=Sequence derived from alignment at sc0000474:70764..83692- (Clytia hemisphaerica)
CGAAAGAAAGAAATTCAACCTTACTTGAAGCGAGAAGTTCAAGGGAAAGA
TTACGAAAAACCGATCGGCTTCAAAACGGAAGATTACTTCGAAGCTTCTT
TCCACTTACTTCCCGATGATCAATTAGTGAGTAGTACTGAGGAAGAATCA
AACGATTGACGTTTCATAGGAGTTGTTCATAACGCCGTAGATGATGCCGA
AAATAAAGTCAAAATTGCTGAGAAAGAATTGGGCAGTAAAAATATCAAGA
AGATTCTTCATAATGTTCCTGTACCCAAGTTTCTACAGATACGGACAGAA
TCGAAAGATGTGTTGTTTACTATAGCACCAGTTCTTCATGAAAGATGTAT
GGAAACAAAACCCTTATTTCAACAGATTGATGATTTAGAGAAAGAAGAAA
TTGACACTTTGATATCTGGCGTCCTTGCTAAGCTTGAAGAATTTTGTCAA
GTCATTGAAAATATGGCAGAGAATATAGGAGAGGAAGAATCGGAAGTGAA
AAGTATCGAAGAAGAATTAGCTCTTGACTTAAAATCTTTCCTCACAGTTG
ATGTTTCAAAACAGCGAAAGAAAGAAATTCAACCTTACTTGAAGCGAGAA
GTTCAAGGGAAAGATTACGAAAAACCGATCGGCTTCAAAACGGAAGATTA
CTTCGAAGCTTCTTTCCACTTACTTCCCGATGATCAATTAGTGAGTAGTA
CTGAGGAAGAATCAAACGATTGACGTTTCATAGGAGTTGTTCATAACGCC
GTAGATGATGCCGAAAATAAAGTCAAAATTGCTGAGAAAGAATTGGGCAG
TAAAAATATCAAGAAGATTCTTCATAATGTTCCTGTACCCAAGTTTCTAC
AGATACGGACAGAATCGAAAGATGTGTTGTTTACTATAGCACCAGTTCTT
CATGAAAGATGTATGGAAACAAAACCCTTATTTCAACAGATTGATGATTT
AGAGAAAGAAGAAATTGACACTTTGATATCTGGCGTCCTTGCTAAGCTTG
AAGAATTTTGTCAAGTCATTGAAAATATGGCAGAGAATATAGGAGAGGAA
GAATCGGAAGTGAAAAGTATCGAAGAAGAATTAGCTCTTGACTTAAAATC
TTTCCTCACAGTTGATGTTTCAAAACAGCGAAAGAAAGAAATTCAACCTT
ACTTGAAGCGAGAAGTTCAAGGGAAAGATTACGAAAAACCGATCGGCTTC
AAAACGGAAGATTACTTCGAAGCTTCTTTCCACTTACTTCCCGATGATCA
ATTAGTGAGTAGTACTGAGGAAGAATCAAACGATTGACGTTTCATAGGAG
TTGTTCATAACGCCGTAGATGATGCCGAAAATAAAGTCAAAATTGCTGAG
AAAGAATTGGGCAGTAAAAATATCAAGAAGATTCTTCATAATGTTCCTGT
ACCCAAGTTTCTACAGATACGGACAGAATCGAAAGATGTGTTGTTTACTA
TAGCACCAGTTCTTCATGAAAGATGTATGGAAACAAAACCCTTATTTCAA
CAGATTGATGATTTAGAGAAAGAAGAAATTGACACTTTGATATCTGGCGT
CCTTGCTAAGCTTGAAGAATTTTGTCAAGTCATTGAAAATATGGCAGAGA
ATATAGGAGAGGAAGAATCGGAAGTGAAAAGTATCGAAGAAGAATTAGCT
CTTGACTTAAAATCTTTCCTCACAGTTGATGTTTCAAAACAGCGAAAGAA
AGAAATTCAACCTTACTTGAAGCGAGAAGTTCAAGGGAAAGATTACGAAA
AACCGATCGGCTTCAAAACGGAAGATTACTTCGAAGCTTCTTTCCACTTA
CTTCCCGATGATCAATTAGTGAGTAGTACTGAGGAAGAATCAAACGATTG
ACGTTTCATAGGAGTTGTTCATAACGCCGTAGATGATGCCGAAAATAAAG
TCAAAATTGCTGAGAAAGAATTGGGCAGTAAAAATATCAAGAAGATTCTT
CATAATGTTCCTGTACCCAAGTTTCTACAGATACGGACAGAATCGAAAGA
TGTGTTGTTTACTATAGCACCAGTTCTTCATGAAAGATGTATGGAAACAA
AACCCTTATTTCAACAGATTGATGATTTAGAGAAAGAAGAAATTGACACT
TTGATATCTGGCGTCCTTGCTAAGCTTGAAGAATTTTGTCAAGTCATTGA
AAATATGGCAGAGAATATAGGAGAGGAAGAATCGGAAGTGAAAAGTATCG
AAGAAGAATTAGCTCTTGACTTAAAATCTTTCCTCACAGTTGATGTTTCA
AAACAGCGAAAGAAAGAAATTCAACCTTACTTGAAGCGAGAAGTTCAAGG
GAAAGATTACGAAAAACCGATCGGCTTCAAAACGGAAGATTACTTCGAAG
CTTCTTTCCACTTACTTCCCGATGATCAATTAGTGAGTAGTACTGAGGAA
GAATCAAACGATTGACGTTTCATAGGAGTTGTTCATAACGCCGTAGATGA
TGCCGAAAATAAAGTCAAAATTGCTGAGAAAGAATTGGGCAGTAAAAATA
TCAAGAAGATTCTTCATAATGTTCCTGTACCCAAGTTTCTACAGATACGG
ACAGAATCGAAAGATGTGTTGTTTACTATAGCACCAGTTCTTCATGAAAG
ATGTATGGAAACAAAACCCTTATTTCAACAGATTGATGATTTAGAGAAAG
AAGAAATTGACACTTTGATATCTGGCGTCCTTGCTAAGCTTGAAGAATTT
TGTCAAGTCATTGAAAATATGGCAGAGAATATAGGAGAGGAAGAATCGGA
AGTGAAAAGTATCGAAGAAGAATTAGCTCTTGACTTAAAATCTTTCCTCA
CAGTTGATGTTTCAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013529XLOC_013529Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024084-exon-sc0000474-1575043694:83589..83692TCONS_00024084-exon-sc0000474-1575043694:83589..83692Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1575043694:78449..78590TCONS_00024084-exon-sc0000474-1575043694:78449..78590Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1575043694:74076..74198TCONS_00024084-exon-sc0000474-1575043694:74076..74198Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1575043694:73805..73876TCONS_00024084-exon-sc0000474-1575043694:73805..73876Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1575043694:72902..73003TCONS_00024084-exon-sc0000474-1575043694:72902..73003Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1575043694:71888..72016TCONS_00024084-exon-sc0000474-1575043694:71888..72016Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1575043694:70764..71367TCONS_00024084-exon-sc0000474-1575043694:70764..71367Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:83589..83692TCONS_00024084-exon-sc0000474-1510915933:83589..83692Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:78449..78590TCONS_00024084-exon-sc0000474-1510915933:78449..78590Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:74076..74198TCONS_00024084-exon-sc0000474-1510915933:74076..74198Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:73805..73876TCONS_00024084-exon-sc0000474-1510915933:73805..73876Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:72902..73003TCONS_00024084-exon-sc0000474-1510915933:72902..73003Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:71888..72016TCONS_00024084-exon-sc0000474-1510915933:71888..72016Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1510915933:70764..71367TCONS_00024084-exon-sc0000474-1510915933:70764..71367Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:83589..83692TCONS_00024084-exon-sc0000474-1491911889:83589..83692Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:78449..78590TCONS_00024084-exon-sc0000474-1491911889:78449..78590Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:74076..74198TCONS_00024084-exon-sc0000474-1491911889:74076..74198Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:73805..73876TCONS_00024084-exon-sc0000474-1491911889:73805..73876Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:72902..73003TCONS_00024084-exon-sc0000474-1491911889:72902..73003Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:71888..72016TCONS_00024084-exon-sc0000474-1491911889:71888..72016Clytia hemisphaericaexon
TCONS_00024084-exon-sc0000474-1491911889:70764..71367TCONS_00024084-exon-sc0000474-1491911889:70764..71367Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024084-proteinTCONS_00024084-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000474supercontigsc0000474:70764..83692 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.9937	65.6261	22.1366	16.1324	29.4595	20.1612	47.8779	45.1028	33.623	29.4656	26.4441	19.7084	20.3887	15.3866	14.0848	13.8387	13.2291	15.4526	13.3606	24.596	13.695	12.9365	47.2735	40.275	20.0629	23.1945	26.5803	28.4159	22.512	21.4697
Blast
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BLAST of TCONS_00024084 vs. Swiss-Prot (Human)
Match: BL1S4 (Biogenesis of lysosome-related organelles complex 1 subunit 4 OS=Homo sapiens GN=BLOC1S4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.950e-16
Identity = 42/132 (31.82%), Postives = 71/132 (53.79%), Query Frame = 1 
Query:  373 EEIDTLISGVLAKLEEFCQVIENIRTESKDVLFTIAPVLHERCMETKPLFQQIDDLERFIGVVHNAVDDAENKVKIAEKELGS--KNIKKILHNVPVPKFLQRKKEIQPYLKREVQGKDYEKPIGFKTEDYF 762
            E +D  +  +L +++EF  +++ +R +S  V+    P +H +  E + ++ +ID LE F+ +V   V   E +V  AE ELG+  +  KK+LH + VP    +    +P      Q   YE P+ F+TEDYF
Sbjct:   83 EALDASLEDLLTRVDEFVGMLDMLRGDSSHVVSEGVPRIHAKAAEMRRIYSRIDRLEAFVRMVGGRVARMEEQVTKAEAELGTFPRAFKKLLHTMNVPSLFSKSAPSRP------QQAGYEAPVLFRTEDYF 208
The following BLAST results are available for this feature:
BLAST of TCONS_00024084 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BL1S42.950e-1631.82Biogenesis of lysosome-related organelles complex ... [more]
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