TCONS_00023832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023832
Unique NameTCONS_00023832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023832 ID=TCONS_00023832|Name=TCONS_00023832|organism=Clytia hemisphaerica|type=transcript|length=780bp
GCTAGAAGGTatgaaaaaaatggaaattgcGAAAAGACCTAAAGCCTTTT
TGATTGACGAATTCTATGAAACCAGTACATTAAACGAATTATTATATATC
GTTGATGTTATATGGATTGCACTAGATGCTCAATTACAAGACATGCGCAT
TGAATCTTTTACCGAGGTCAATCTCAACAAAAACCTTCGCAATAGTAGAG
AGATAGTGTTAgaagcaaagaaaaaaatagcACGTATATCCAAAGAATGT
TTATCCATGCCTCCAAAGAACTTTCCACGTGGATGTCTTACAATCACAGT
AGATTCTCTTGATGAAGGTTTAGATAAAGCTAGAGAAATGACATCCGAAG
GTGTTTTGGTTATAAGTACTGCTATAACTAATGTATATAAGATCATGTCT
AGGACGAATAACGGATGGGAGATTATAAAATTTAATGCTCCTTATTCACC
ATATGAACATCTTTTGAAAGGTGGAATTTTAATGGCTGGACGGCCCAAGT
GGAAGGGTTTCGAATGGCCCACCGTAGTTGTTGATACGGAGGCGGAGTAT
TACGGTGATAAAAGTAACCTTTACATGCGATGTACAACCAATTTGATAAT
TGTGCGATAATATAAATAATGTAATGTAAGTCTTTTGCTGTTGGTTTAAC
ATAGAACAAGTATACCTACTGTAATGTAAATATTGTAAAATCAAGTGTCC
ATAAAAttgcaatcaaaaatatgagTGAGAAAGATTTTCAATAGAAATCT
ACAAACAAACTTTATACAGGAATATTTGGA
Run BLAST on NCBI

protein sequence of TCONS_00023832-protein

>TCONS_00023832-protein ID=TCONS_00023832-protein|Name=TCONS_00023832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
LEGMKKMEIAKRPKAFLIDEFYETSTLNELLYIVDVIWIALDAQLQDMRI
ESFTEVNLNKNLRNSREIVLEAKKKIARISKECLSMPPKNFPRGCLTITV
DSLDEGLDKAREMTSEGVLVISTAITNVYKIMSRTNNGWEIIKFNAPYSP
YEHLLKGGILMAGRPKWKGFEWPTVVVDTEAEYYGDKSNLYMRCTTNLII
VR
Run BLAST on NCBI

transcript from alignment at sc0000462:126530..127309

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023832 ID=TCONS_00023832|Name=TCONS_00023832|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at sc0000462:126530..127309 (Clytia hemisphaerica)
TCCAAATATTCCTGTATAAAGTTTGTTTGTAGATTTCTATTGAAAATCTT
TCTCActcatatttttgattgcaaTTTTATGGACACTTGATTTTACAATA
TTTACATTACAGTAGGTATACTTGTTCTATGTTAAACCAACAGCAAAAGA
CTTACATTACATTATTTATATTATCGCACAATTATCAAATTGGTTGTACA
TCGCATGTAAAGGTTACTTTTATCACCGTAATACTCCGCCTCCGTATCAA
CAACTACGGTGGGCCATTCGAAACCCTTCCACTTGGGCCGTCCAGCCATT
AAAATTCCACCTTTCAAAAGATGTTCATATGGTGAATAAGGAGCATTAAA
TTTTATAATCTCCCATCCGTTATTCGTCCTAGACATGATCTTATATACAT
TAGTTATAGCAGTACTTATAACCAAAACACCTTCGGATGTCATTTCTCTA
GCTTTATCTAAACCTTCATCAAGAGAATCTACTGTGATTGTAAGACATCC
ACGTGGAAAGTTCTTTGGAGGCATGGATAAACATTCTTTGGATATACGTg
ctatttttttctttgcttcTAACACTATCTCTCTACTATTGCGAAGGTTT
TTGTTGAGATTGACCTCGGTAAAAGATTCAATGCGCATGTCTTGTAATTG
AGCATCTAGTGCAATCCATATAACATCAACGATATATAATAATTCGTTTA
ATGTACTGGTTTCATAGAATTCGTCAATCAAAAAGGCTTTAGGTCTTTTC
gcaatttccatttttttcatACCTTCTAGC

Coding sequence (CDS) from alignment at sc0000462:126530..127309

>TCONS_00023832 ID=TCONS_00023832|Name=TCONS_00023832|organism=Clytia hemisphaerica|type=CDS|length=609bp|location=Sequence derived from alignment at sc0000462:126530..127309 (Clytia hemisphaerica)
TTATCGCACAATTATCAAATTGGTTGTACATCGCATGTAAAGGTTACTTT
TATCACCGTAATACTCCGCCTCCGTATCAACAACTACGGTGGGCCATTCG
AAACCCTTCCACTTGGGCCGTCCAGCCATTAAAATTCCACCTTTCAAAAG
ATGTTCATATGGTGAATAAGGAGCATTAAATTTTATAATCTCCCATCCGT
TATTCGTCCTAGACATGATCTTATATACATTAGTTATAGCAGTACTTATA
ACCAAAACACCTTCGGATGTCATTTCTCTAGCTTTATCTAAACCTTCATC
AAGAGAATCTACTGTGATTGTAAGACATCCACGTGGAAAGTTCTTTGGAG
GCATGGATAAACATTCTTTGGATATACGTgctatttttttctttgcttcT
AACACTATCTCTCTACTATTGCGAAGGTTTTTGTTGAGATTGACCTCGGT
AAAAGATTCAATGCGCATGTCTTGTAATTGAGCATCTAGTGCAATCCATA
TAACATCAACGATATATAATAATTCGTTTAATGTACTGGTTTCATAGAAT
TCGTCAATCAAAAAGGCTTTAGGTCTTTTCgcaatttccatttttttcat
ACCTTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013389XLOC_013389Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023832-proteinTCONS_00023832-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023832-exon-sc0000462-1491911889:126530..127309TCONS_00023832-exon-sc0000462-1491911889:126530..127309Clytia hemisphaericaexon
TCONS_00023832-exon-sc0000462-1510915933:126530..127309TCONS_00023832-exon-sc0000462-1510915933:126530..127309Clytia hemisphaericaexon
TCONS_00023832-exon-sc0000462-1575043694:126530..127309TCONS_00023832-exon-sc0000462-1575043694:126530..127309Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000462supercontigsc0000462:126530..127309 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.837894	0.529692	1.75739	1.27133	0.618249	0.535396	0.314743	0.464685	2.44632	0.959801	1.2541	1.51394	0.379259	0.756891	1.09539	0.586622	0.183897	0.271289	0	0.194303	0.0667091	0	0	0.183788	0.558185	0.64878
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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