TCONS_00023697 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023697
Unique NameTCONS_00023697
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023697 ID=TCONS_00023697|Name=TCONS_00023697|organism=Clytia hemisphaerica|type=transcript|length=1256bp
TTTTGTAATTCGCGACCTGATTGGTTAATCAGGATATATGAGGAAGTTTG
ATTGGTCTCCTATTTTGGGGTTTTCACTGAGAGATTTCTAcatcaaaaaa
attcttgagaGACGTTGAAATTGAAGGGGCTGGAAGTTGAACGTAGACGA
AACTGGACAAGATATAAACTTATCGTTTTATATCCTGAAATCCTTCGAAA
AATAATGTCTTCTGCACAGATTATGATATTCGATATGGATCTACAGATTG
ATAAGAAGAAATTTCTGCAAGGAGAAAGCTCAGTTCCAACTGCTCCACCA
CCAAGTCCAAATTCGAGTAACCGTAGAAAATTTGCAAATCCAACAGTACT
TCCTATGTCTAGACTTATTGGGTGTTGTGAAGAACTTGTATCGAAACAAA
CTTTAGACTCTACAAACCTATATAAAAGCAAGCCAGTATCAATGAAAAGA
AAGACGAGCGATAGTGATGGTTTTTCTTCCTGTTCTACATCATCTTCAGC
AGGAACTTCACCTGGAGCTACATCAGACTATTCTTGCTCTTTTGGCAAAC
GTAGTAGATCTTCTTTTGAAGTTGGAAgtaattcttttaaaagattgGAC
TTTTCAATGAGTGAACTATCAGCAGCCATTAATGCTAGCCAATCTAATGA
TGCGGCAATGGAATTTTGAATGGTAGTTGTTTAACATCGcagatttaaat
tttaaaagagTTATTCAGTTGCTGCTTCATATAACAAGCAAGTGCCTGGT
GCTTTTTAAAATACAAATGATTGCGCATATTGCCAAAGCATGTTGACTAT
AAAAAATCTTGCAGTCTATCTACTGTCAAAGACCATGAAAGACCCTGTTT
GGGGtgatatcttttctttttctgcaAAAGATTTTCCTAAAACTTATGCT
GAGAGCTTTGCAACCAGACCAATAATTAAGCATTGCATCTTGAAAAGaaa
gtgttttttctttattttatttttgtaaataatgaATTATCTAGTTAGAA
ACCTGTTAAAATATGATAAGCAGGAAGAATCTTAAcaatattattatatt
tttcagaGATTTTACGTATTTTAAATCACGTTTAAAAGCTAtttgaatct
taaattttaaagttttctatTAGATTAAGCTTTAGCCATAGCTAGCCCTT
GATAGGAACTATATGTAAATATGTACTGAATTTCCACTtagtttaattta
tttttatgtaCATTAGTTACATTTATGTACAATTAATTACTTTCTTTGAA
GGAAAG
Run BLAST on NCBI

protein sequence of TCONS_00023697-protein

>TCONS_00023697-protein ID=TCONS_00023697-protein|Name=TCONS_00023697-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MSSAQIMIFDMDLQIDKKKFLQGESSVPTAPPPSPNSSNRRKFANPTVLP
MSRLIGCCEELVSKQTLDSTNLYKSKPVSMKRKTSDSDGFSSCSTSSSAG
TSPGATSDYSCSFGKRSRSSFEVGSNSFKRLDFSMSELSAAINASQSNDA
AMEF
Run BLAST on NCBI

transcript from alignment at sc0000458:254098..256235-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023697 ID=TCONS_00023697|Name=TCONS_00023697|organism=Clytia hemisphaerica|type=transcript|length=2138bp|location=Sequence derived from alignment at sc0000458:254098..256235- (Clytia hemisphaerica)
TTTTGTAATTCGCGACCTGATTGGTTAATCAGGATATATGAGGAAGTTTG
ATTGGTCTCCTATTTTGGGGTTTTCACTGAGAGATTTCTACATCAAAAAA
ATTCTTGAGAGACGTTGAAATTGAAGGGGCTGGAAGTTGAACGTAGACGA
AACTGGACAAGATATAAACTTATCGTTTTATATCCTGAAATCCTTCGAAA
AATAATGTCTTCTGCACAGATTATGATATTCGATATGGATCTACAGATTG
ATAAGAAGAAATTTCTGCAAGGAGAAAGCTCAGTTCCAACTGCTCCACCA
CCAAGTCCAAATTCGAGTAACCGTAGAAAATTTGCAAATCCAACAGTACT
TCCTATGTCTAGACTTATTGGGTGTTGTGAAGAACTTGTATCGAAACAAA
CTTTAGACTCTACAAACCTATATAAAAGCAAGCCAGTATCAATGAAAAGA
AAGACGAGCGATAGTGATGGTTTTTCTTCCTGTTCTACATCATCTTCAGC
AGGAACTTCACCTGGAGCTACATCAGACTATTCTTGCTCTTTTGGCAAAC
GTAGTAGATCTTCTTTTGAAGTTGGAAGTAATTCTTTTAAAAGATTGGAC
TTTTCAATGAGTGAACTATCAGCAGCCATTAATGCTAGCCAATCTAATGA
TGCGGCAATGGAATTTTGAATGGTAGTTGTTTAACATCGCAGATTTAAAT
TTTAAAAGAGGTTTTATATTTTTTGGAGCTTTGCACAATTCTTTTCTCTT
TTAATGACTAGGATGAAAGTTCGAGACTAAAGCCTTGATTTTCTCAAGTA
AACTTTGAAACTCGTTTCTGAGAAAAGTTTCCAGGGTGGTAGATTACTTT
ATCGCTGTATTGCTTTGGTTCTTTGATTTAAAGTCTAAATACCTTTGTCA
ATGGGCTATTCCATTTTTAAACCATACAGGGGTATTAACGAACTTTTCCA
GGGGGTCTGAGCCTTGATTTTCCAAGGGGTTTTTGTTCATTTTTCAGATT
TTCCAAGGGGGATATTAAAGGTTTCCAGGGGGTTCTCTCCTCCTAAACTG
ACATCAATAGTTATTTTCCGGGCCGTTTTTCACTAAATTTCACTTTCCAG
GGGTGTCGACCCCTAATTTCCAGGGGATGGTTTGTTATCCAAAATTTCCA
GAGGGGTTAGTGAAAAAAGTTCGTCAATACCCCTGTATAGACAATTTTTT
TTTTGGAATAGCCCAATGGGCATTTGTTGATAAACTCCAATGTGAGAGAG
TATGTTCAGATTGAGAATGAGCTTCATTTGCCCTTTTAAATTTAAGTACG
GGAAATTCTACATGGAAAAAAATTAAGGTTTGGGAAAGAAGTGGGTGAAA
TATTGATTTCAAGATTTCGCAATGGCTATAGGCTATAGCCCTGTAGATAA
ACCTTTCATTGTCAGAACTAGAACAATACAATTTAAAAGTTGTCAATTCA
TCTCATTCTCATGAAAAATGTAAATACTGAATTTTTCTACATTCACAAAC
ACTGTTTTTTTTCATAATTGAAGAATAGGGTGTAGCTTTATTAAAATAGG
TTATATTTGAGATTTTAATAAATATTATATTTATGTTTATAGTTATTCAG
TTGCTGCTTCATATAACAAGCAAGTGCCTGGTGCTTTTTAAAATACAAAT
GATTGCGCATATTGCCAAAGCATGTTGACTATAAAAAATCTTGCAGTCTA
TCTACTGTCAAAGACCATGAAAGACCCTGTTTGGGGTGATATCTTTTCTT
TTTCTGCAAAAGATTTTCCTAAAACTTATGCTGAGAGCTTTGCAACCAGA
CCAATAATTAAGCATTGCATCTTGAAAAGAAAGTGTTTTTTCTTTATTTT
ATTTTTGTAAATAATGAATTATCTAGTTAGAAACCTGTTAAAATATGATA
AGCAGGAAGAATCTTAACAATATTATTATATTTTTCAGAGATTTTACGTA
TTTTAAATCACGTTTAAAAGCTATTTGAATCTTAAATTTTAAAGTTTTCT
ATTAGATTAAGCTTTAGCCATAGCTAGCCCTTGATAGGAACTATATGTAA
ATATGTACTGAATTTCCACTTAGTTTAATTTATTTTTATGTACATTAGTT
ACATTTATGTACAATTAATTACTTTCTTTGAAGGAAAG

Coding sequence (CDS) from alignment at sc0000458:254098..256235-

>TCONS_00023697 ID=TCONS_00023697|Name=TCONS_00023697|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0000458:254098..256235- (Clytia hemisphaerica)
ATGTCTTCTGCACAGATTATGATATTCGATATGGATCTACAGATTGATAA
GAAGAAATTTCTGCAAGGAGAAAGCTCAGTTCCAACTGCTCCACCACCAA
GTCCAAATTCGAGTAACCGTAGAAAATTTGCAAATCCAACAGTACTTCCT
ATGTCTAGACTTATTGGGTGTTGTGAAGAACTTGTATCGAAACAAACTTT
AGACTCTACAAACCTATATAAAAGCAAGCCAGTATCAATGAAAAGAAAGA
CGAGCGATAGTGATGGTTTTTCTTCCTGTTCTACATCATCTTCAGCAGGA
ACTTCACCTGGAGCTACATCAGACTATTCTTGCTCTTTTGGCAAACGTAG
TAGATCTTCTTTTGAAGTTGGAAGTAATTCTTTTAAAAGATTGGACTTTT
CAATGAGTGAACTATCAGCAGCCATTAATGCTAGCCAATCTAATGATGCG
GCAATGGAATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013310XLOC_013310Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023697-proteinTCONS_00023697-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023697-exon-sc0000458-1575043694:255526..256235TCONS_00023697-exon-sc0000458-1575043694:255526..256235Clytia hemisphaericaexon
TCONS_00023697-exon-sc0000458-1575043694:254098..254643TCONS_00023697-exon-sc0000458-1575043694:254098..254643Clytia hemisphaericaexon
TCONS_00023697-exon-sc0000458-1510915933:255526..256235TCONS_00023697-exon-sc0000458-1510915933:255526..256235Clytia hemisphaericaexon
TCONS_00023697-exon-sc0000458-1510915933:254098..254643TCONS_00023697-exon-sc0000458-1510915933:254098..254643Clytia hemisphaericaexon
TCONS_00023697-exon-sc0000458-1491911889:255526..256235TCONS_00023697-exon-sc0000458-1491911889:255526..256235Clytia hemisphaericaexon
TCONS_00023697-exon-sc0000458-1491911889:254098..254643TCONS_00023697-exon-sc0000458-1491911889:254098..254643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000458supercontigsc0000458:254098..256235 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60331	2.24274	0.0888103	0	13.0261	10.525	9.87933	11.7905	12.9603	14.6426	11.2266	17.1109	18.0957	12.8276	16.5932	24.2172	14.8085	26.4984	7.08013	12.5768	10.8714	9.36654	7.66704	10.2658	29.3616	19.682	9.5212	6.26206	13.4236	11.1338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023697 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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