TCONS_00023688 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023688
Unique Name	TCONS_00023688
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2768

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000458:184378..189584+
coding sequence from alignment at sc0000458:184378..189584+

transcript sequence

>TCONS_00023688 ID=TCONS_00023688|Name=TCONS_00023688|organism=Clytia hemisphaerica|type=transcript|length=2768bp
cagagaaaaaaaaagtacaaaaaaaaacaaaaattctttaCAAAATGCAT
CTTTGGATTGACAAGGACTGAAACAATTTGGAAGAAATCATAATGTAAGA
AATATCGAGACACACAGTAGACACACATTCAGACGAAGATGCAAGTTGCA
ATTCATTTTTTGGTTCAATCATTTATCAGTTCATCTGTTGTGGTGAAATC
AGCATGCGGAGTTATTGTGACGGCTTATCTGATTGGATTGATCCCTAATG
CTTACGGTGTACTGTCTATCACTCCGGCACTATTACTACCACCAAATTTT
CAAGTGTGGACACTTGTTACTGGTCTCGTCGTAGAGAGAAGTATCATAAA
TGTACTGATTAATTTACCCGCTATCATTTTATGTGGACAACATTTGGAAC
CGTTATGGGGTGCCTTAGAACTTTTAAAATTTATCACGATTACGTCAGTC
GGGACGgcactgatgacgtcatttgtaTCATTAGCGGCTTACGCGATTAC
GCATCGCTTCACGTTTTGGGCGGTGCAATTTTCAGGGATGGCAGGAGTTC
TTGGTGGACTTACTGTAGCATTCAAACAATTAAGACCTGATCAAAGATTT
AATATGAAGTATAAAGAACTACGTGTTCATgatTTACCAATATCATGCAT
AATAATATTCACATTATTGGCAATCTTTCGATTGCTACCCTACACACAAC
CGATCATGATGGCGTGTGGCGTTATCGTAGGGTGGACTTACCTGCGTTTC
TATCAATCTCATGGTAAAGGGATGAGGGGGGATATGAGCGAAGGTTTTTC
AGCTGCCACGCTACTACCAACTCCTATCAGgCCAGCAGCGAGTGTTCTTT
CAGATATTTTATATCGAATCCTGGTCAGGTTTGGTTTGTGTCAAAATCCA
GTACGCACGTACGATGTCGGCGGCCCGTCGTCAATCACCATCAGCCTGCC
GGGCTCCGATCCTGCCGACGCTGAACGAAGAAGgAAAAAAGCTTTACGTG
CATTGAACGAACGTTTAACACAAATGCAACAAAAATCTTCACAACAAGAG
ATGGAAACAATCGACGGGTGGCCTTtattagaaaacgaaagcacGCCCTC
TTCGACGCCTTCAGCCTCTGTTTCAGAAACGAACAATAAAGAATCACACG
AGAATGAGGCTGATTCAGATTCAGACAAAAACAGTCAAGAGAGCTTTGTG
AAAGTACCGAAAGGAACGGATAGTGATTCAATATCAGATTAATGGTGCAT
TTGTTTCTGGTTTCCCTTACACTGCAATTACTTGAATCGTTGGATCGTCT
TGATTATGATATGGGGCTAACTTCGCGCTTGTATGACATCAATGCAGTGA
CATAGTGAACTGTAATTTGATCTACTGCGTGCGCCAGAAGTTCCCTCTTT
GAAGTGTTTTTTTGCGAGTTTCGCTAGTTTTAAGGGAATTAAAAATCCTT
TTTATTGGAAAGAGAAAGAGTAGACTTGAATTTTGATCGGCTTTTGCatt
aaatttagtctatttaaATCAGAAAGTTACGTTCAAGTGAATAAGAAAAT
GAAATCAAGCTATCCGTCTTCAAGCCAAAGTAAACCAACAACGAGAACAA
TTTACATTAACCTCCAGTTCCCACTAAGGTTATATTATGTCTGTAACTAA
GAAGCGCTAAACCTTACGATAAAGACTATTTGAATATTGATATCATATTC
CAAATGAAACAATGTTTCGGAAGTCATGTTGTTCATACACTTTTATTTTT
GtacaaatttaaaacattagAAATTAGCAAGTAGATCTTTCACGCCATCG
TACTTCAAGTTGATTCGTAATATAGTAGGCCCGATTTGTAACAAATTCCA
TAAAAATCGTGCACATTTTGAACAAAGCACCAAATTTGAAACAAAGCACc
aaatttggaacaaagcacCAGATTTGGACCAGATTTGGACCAGACATGCC
TAATACCCTATGGATTGATATTAGAAGGGCGGCCCGGAAAATTTTTAAGG
GCAgtctttatttattatttatttttggaCCCATTTATTGAAAACCTAGG
CTAGCCGAGGGctcattttttatggaaatttcaaactcattttaggccaa
aaccaTTTATAGAATCTAAAAGCTCttgaaaaactaaataaaagaCTTTT
AAGCGAGTATGGCCGATTTCTGTACTAAACGGGAGTTATTTGATGAAGAA
GTGGTGGTTTCCCCTCTCATTTTGGTCATAAGTCGCTTCTAAAATGACAC
TTCTACATCAAATAACTCCCGTTCATGtttggtcaaaatttgttgctttg
ttccaaatttgcacgataattacaccaatcaggccTACTATTATacccat
tttgttttgatgtaatataatttagtttttttctttgtagtAGTTCGGTT
TTAATCAGGTGGCGGTTTGCATATAAAAAGGATTTGCTACTCAAACTAAG
TTAGACTCATCAAATAATCACTCGACCTTTTTTTCTTTACATATTAActg
gttatttttcaaaagttaataTTTATTATACGTGTTTTGGTAATTTTATG
CGAATATCTTTAAATGTTTTTGGaattaaatatcaaatttaaaaatcatt
acAGTCTGAATTTCTGATTTTAAATGAAAAGCTCTAGTGAACCTAGGCTG
CAtatccccaaattagttttgatataggggatgcgaatcaggctctgata
tcgcttccgagaaaattaccgaatagctatgtattttgcagaattttggc
gacttgtatttttcaaaa

Run BLAST on NCBI

protein sequence of TCONS_00023688-protein

>TCONS_00023688-protein ID=TCONS_00023688-protein|Name=TCONS_00023688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MQVAIHFLVQSFISSSVVVKSACGVIVTAYLIGLIPNAYGVLSITPALLL
PPNFQVWTLVTGLVVERSIINVLINLPAIILCGQHLEPLWGALELLKFIT
ITSVGTALMTSFVSLAAYAITHRFTFWAVQFSGMAGVLGGLTVAFKQLRP
DQRFNMKYKELRVHDLPISCIIIFTLLAIFRLLPYTQPIMMACGVIVGWT
YLRFYQSHGKGMRGDMSEGFSAATLLPTPIRPAASVLSDILYRILVRFGL
CQNPVRTYDVGGPSSITISLPGSDPADAERRRKKALRALNERLTQMQQKS
SQQEMETIDGWPLLENESTPSSTPSASVSETNNKESHENEADSDSDKNSQ
ESFVKVPKGTDSDSISD

Run BLAST on NCBI

transcript from alignment at sc0000458:184378..189584+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023688 ID=TCONS_00023688|Name=TCONS_00023688|organism=Clytia hemisphaerica|type=transcript|length=5207bp|location=Sequence derived from alignment at sc0000458:184378..189584+ (Clytia hemisphaerica)
cagagaaaaaaaaagtacaaaaaaaaacaaaaattctttaCAAAATGCAT
CTTTGGATTGACAAGGACTGAAACAATTTGGAAGAAATCATAATGTAAGA
AATATCGAGACACACAGTAGACACACATTCAGACGAAGATGCAAGTTGCA
ATTCATTTTTTGGTTCAATCATTTATCAGTTCATCTGTTGTGGTGAAATC
AGCATGCGGAGTTATTGTGACGGCTTATCTGATTGGATTGATCCCTAATG
CTTACGGTGTACTGTCTATCACTCCGGCACTGTTAGTTTTATTTCttcaa
ttctcaacttcagttgaacTAGAATCTGAATGTCTGTCAGTGTGTCTGCC
AAAGTTTTTGGGGTAGCCTGAAATTTGAAACACTttttccttgggtgaat
atctgggggcgttttctttcatttttcaaaaaattttgaggcCTGGGTTT
GGTTTGCTACAATCGGGCCATAGGCCATAGTTACTGAaattgagcccagt
gcgttgtgCATGTTCGACTATTTGTATAATTCCCTTGAATCCTTTTACAT
TTACCATCAGTGAGTCGGCTTTGCCCGAGACGTTAGTTTCAACATTCTTA
TAaggttatatggacgttatgaatgttagATAGGCAAGAAGCAACATTTT
GTGACAGTTGGGTGAGTGTCAAACTCAAAATACACAATTTCCAAGTCATT
CTGATCGTCTATTATTTTTAAGAAGTTCGAGTACAGTAATAGATAGAGAA
ATTCCATTCAGACAAATTGgcatttatttttatatttgtaGATTACTACC
ACCAAATTTTCAAGTGTGGACACTTGTTACTGGTCTCGTCGTAGAGAGAA
GTATCATAAATGTAAGAATGATTTacacagtttttttataagaacaaaat
ataagaacacgaggcttcgatggccaaaatgttatgaacaagttaagaat
attttaaggctttgcggaccctaaaacacctattttcttaggaaaattga
caaaaatacccacaaatGGTGaagaagaacatgttaagaacatttttagg
ctttaaactcaaaaagttaagagcatccaaaGGCTTTTGAAAAACGTGTA
ATTGTTGTTATAATTGTAATCTTTTGTTTCATGTATTGTGGATAATCTCT
GCAAcgtttttttactcttttttagGTACTGATTAATTTACCCGCTATCA
TTTTATGTGGACAACATTTGGAACCGTTATGGGGTGCCTTAGAACTTTTA
GTAAGcctcattttttttgtaaaagtacaGGGGGTTTGATGATACTTGAC
ATAACATTTTGCGTAGTCGCTTCATCAAAACAATGTAATATCACTGGAAG
ATGGTGCTGAATTTGTACAAGTTTTGATAACTTGTTTTGTAGCATAAGTT
TCGGTCTTTTTGAGTCAAAACCATCATTTTCAAAcgggtattttcaaaaa
atcttaagaatctGTTGAAAATTACTTTTCTTCTCATAGAAATTTATCAC
GATTACGTCAGTCGGGACGgcactgatgacgtcatttgtaTCATTAGCGG
CTTACGCGATTACGCATCGCTTCACGTTTTGGTAAGATTCTTGTCGTCAC
TTAAATCGAATGGATCAAATGCTGCTTATTTGGTTCTTTCGCCAGGTTTT
ACTATTTCGATTCTAGTTTAAATACTAGATTCTTCTATCGGAATCCTTGT
TCTTTCTCGTCCAAGATAAATATATTTAATAATCCTCCCTTATTTTTAGG
GCGGTGCAATTTTCAGGGATGGCAGGAGTTCTTGGTGGACTTACTGTAGC
ATTCAAACAATTAAGACCTGATCAAAGATTTAATATGAAGTATAAAGAAC
TACGTGTTCATGTAAGTAGTTTTGCTTTGAGTCAGTTttattttcggtca
ttttctcATAATATGTTTCCGTTGAAAATATTGCTCTCCTATCTAGCTCC
TTTCTATAAAGATTAATTTAAAAATCTACCTACTCGTGTAAGTATTCAGC
AAGCACCCCTACCTTGTCAATTCGATTTCTGGACATAGTTCAAGAATTCC
TTTGCTTTCTGTCAGAAATCTGTTTAAATAACATGTTCTAATTTGTTATA
TCCGACCATGACAtggcatgaacccccccccagcccgcaggggggggggc
tacaaccaaaatcttcctgaaaaaggctgggggctggattttttttcaat
ttcagggggtacctatgatctctggggGTATCTAACTTATATAcagtaag
gtctgggggcttgggaactatattttatcttgcttttatctaactatcat
tattctttttaattgtaaaaatatacaatttttttcatttcttgacattc
aagtcacagggggtaccaatcacagggggtacctactaacATCTGTTCTT
tggggtacctaaaattcagggggtacctattttcttagggggtacctaaa
cccctggtccatgccatgcATGAATGTTATAATCGAATGTTAATCGAATT
AATGTTTTTGgtgcattttctttttttatttcaggatTTACCAATATCAT
GCATAATAATATTCACATTATTGGCAATCTTTCGATTGCTACCCTACACA
CAACCGATCATGATGGCGTGTGGCGTTATCGTAGGGTGGACTTACCTGCG
TTTCTATCAATCTCATGGTAAAGGGATGAGGGGGGATATGAGCGAAGGTT
TTTCAGCTGCCACGCTACTACCAACTCCTATCAGGTGATTTTTTAGACTA
TTTGCTTGAGATAATTTTAAGGTTATTGTACACAAGCATTGTTAGAAACG
TTTCCCTGACTCTGGCTAAAGGTTAGTTAATTTTCTCTTCAACAGTAAGT
CAGAGGCGACCCGAAAGCTTCTTTTTCGATAGCTATTTACCAGAAGGTAG
GAGAGGGTGACACTCTTTCTCTACTTGGGGTTTTTCTTAAATAATAACCT
TAAATGAtacattttccttttattttaggCCAGCAGCGAGTGTTCTTTCA
GATATTTTATATCGAATCCTGGTCAGGTTTGGTTTGTGTCAAAATCCAGT
ACGCACGTACGATGTCGGCGGCCCGTCGTCAATCACCATCAGCCTGCCGG
GCTCCGATCCTGCCGACGCTGAACGAAGAAGGTACATTCTTGTTTCTGCA
CATAAAAACTTATAACAATTAAAGCTCTGTTCTGCCATTGGTTGACGGAG
AAGCATAAAAGTGTTTGAGATGTTTTATTTAAGTTCATCCGAACCCGTAA
TATCATTGGTCTTGAAGGAATCAATAATTTAACATTTCTAAAATTGGGTA
ATTTTGACTTCCTCAACGTTTCGAggattctaatgtttttttgttttttt
tttcgaacatGGCAAAATGATTTTGAAGCAATTTGACCGCAATTTATAAT
AttgttttccatctctttacaggAAAAAAGCTTTACGTGCATTGAACGAA
CGTTTAACACAAATGCAACAAAAATCTTCACAACAAGAGATGGAAACAAT
CGACGGGTGGCCTTtattagaaaacgaaagcacGCCCTCTTCGACGCCTT
CAGCCTCTGTTTCAGAAACGAACAATAAAGAATCACACGAGAATGAGGCT
GATTCAGATTCAGACAAAAACAGTCAAGAGAGCTTTGTGAAAGTACCGAA
AGGAACGGATAGTGATTCAATATCAGATTAATGGTGCATTTGTTTCTGGT
TTCCCTTACACTGCAATTACTTGAATCGTTGGATCGTCTTGATTATGATA
TGGGGCTAACTTCGCGCTTGTATGACATCAATGCAGTGACATAGTGAACT
GTAATTTGATCTACTGCGTGCGCCAGAAGTTCCCTCTTTGAAGTGTTTTT
TTGCGAGTTTCGCTAGTTTTAAGGGAATTAAAAATCCTTTTTATTGGAAA
GAGAAAGAGTAGACTTGAATTTTGATCGGCTTTTGCattaaatttagtct
atttaaATCAGAAAGTTACGTTCAAGTGAATAAGAAAATGAAATCAAGCT
ATCCGTCTTCAAGCCAAAGTAAACCAACAACGAGAACAATTTACATTAAC
CTCCAGTTCCCACTAAGGTTATATTATGTCTGTAACTAAGAAGCGCTAAA
CCTTACGATAAAGACTATTTGAATATTGATATCATATTCCAAATGAAACA
ATGTTTCGGAAGTCATGTTGTTCATACACTTTTATTTTTGtacaaattta
aaacattagAAATTAGCAAGTAGATCTTTCACGCCATCGTACTTCAAGTT
GATTCGTAATATAGTAGGCCCGATTTGTAACAAATTCCATAAAAATCGTG
CACATTTTGAACAAAGCACCAAATTTGAAACAAAGCACcaaatttggaac
aaagcacCAGATTTGGACCAGATTTGGACCAGACATGCCTAATACCCTAT
GGATTGATATTAGAAGGGCGGCCCGGAAAATTTTTAAGGGCAgtctttat
ttattatttatttttggaCCCATTTATTGAAAACCTAGGCTAGCCGAGGG
ctcattttttatggaaatttcaaactcattttaggccaaaaccaTTTATA
GAATCTAAAAGCTCttgaaaaactaaataaaagaCTTTTAAGCGAGTATG
GCCGATTTCTGTACTAAACGGGAGTTATTTGATGAAGAAGTGGTGGTTTC
CCCTCTCATTTTGGTCATAAGTCGCTTCTAAAATGACACTTCTACATCAA
ATAACTCCCGTTCATGtttggtcaaaatttgttgctttgttccaaatttg
cacgataattacaccaatcaggccTACTATTATacccattttgttttgat
gtaatataatttagtttttttctttgtagtAGTTCGGTTTTAATCAGGTG
GCGGTTTGCATATAAAAAGGATTTGCTACTCAAACTAAGTTAGACTCATC
AAATAATCACTCGACCTTTTTTTCTTTACATATTAActggttatttttca
aaagttaataTTTATTATACGTGTTTTGGTAATTTTATGCGAATATCTTT
AAATGTTTTTGGaattaaatatcaaatttaaaaatcattacAGTCTGAAT
TTCTGATTTTAAATGAAAAGCTCTAGTGAACCTAGGCTGCAtatccccaa
attagttttgatataggggatgcgaatcaggctctgatatcgcttccgag
aaaattaccgaatagctatgtattttgcagaattttggcgacttgtattt
ttcaaaa

Coding sequence (CDS) from alignment at sc0000458:184378..189584+

>TCONS_00023688 ID=TCONS_00023688|Name=TCONS_00023688|organism=Clytia hemisphaerica|type=CDS|length=8832bp|location=Sequence derived from alignment at sc0000458:184378..189584+ (Clytia hemisphaerica)
ATGCAAGTTGCAATTCATTTTTTGGTTCAATCATTTATCAGTTCATCTGT
TGTGGTGAAATCAGCATGCGGAGTTATTGTGACGGCTTATCTGATTGGAT
TGATCCCTAATGCTTACGGTGTACTGTCTATCACTCCGGCACTATTACTA
CCACCAAATTTTCAAGTGTGGACACTTGTTACTGGTCTCGTCGTAGAGAG
AAGTATCATAAATGTACTGATTAATTTACCCGCTATCATTTTATGTGGAC
AACATTTGGAACCGTTATGGGGTGCCTTAGAACTTTTAAAATTTATCACG
ATTACGTCAGTCGGGACGgcactgatgacgtcatttgtaTCATTAGCGGC
TTACGCGATTACGCATCGCTTCACGTTTTGGGCGGTGCAATTTTCAGGGA
TGGCAGGAGTTCTTGGTGGACTTACTGTAGCATTCAAACAATTAAGACCT
GATCAAAGATTTAATATGAAGTATAAAGAACTACGTGTTCATgatTTACC
AATATCATGCATAATAATATTCACATTATTGGCAATCTTTCGATTGCTAC
CCTACACACAACCGATCATGATGGCGTGTGGCGTTATCGTAGGGTGGACT
TACCTGCGTTTCTATCAATCTCATGGTAAAGGGATGAGGGGGGATATGAG
CGAAGGTTTTTCAGCTGCCACGCTACTACCAACTCCTATCAGgCCAGCAG
CGAGTGTTCTTTCAGATATTTTATATCGAATCCTGGTCAGGTTTGGTTTG
TGTCAAAATCCAGTACGCACGTACGATGTCGGCGGCCCGTCGTCAATCAC
CATCAGCCTGCCGGGCTCCGATCCTGCCGACGCTGAACGAAGAAGgAAAA
AAGCTTTACGTGCATTGAACGAACGTTTAACACAAATGCAACAAAAATCT
TCACAACAAGAGATGGAAACAATCGACGGGTGGCCTTtattagaaaacga
aagcacGCCCTCTTCGACGCCTTCAGCCTCTGTTTCAGAAACGAACAATA
AAGAATCACACGAGAATGAGGCTGATTCAGATTCAGACAAAAACAGTCAA
GAGAGCTTTGTGAAAGTACCGAAAGGAACGGATAGTGATTCAATATCAGA
TTAAATGCAAGTTGCAATTCATTTTTTGGTTCAATCATTTATCAGTTCAT
CTGTTGTGGTGAAATCAGCATGCGGAGTTATTGTGACGGCTTATCTGATT
GGATTGATCCCTAATGCTTACGGTGTACTGTCTATCACTCCGGCACTATT
ACTACCACCAAATTTTCAAGTGTGGACACTTGTTACTGGTCTCGTCGTAG
AGAGAAGTATCATAAATGTACTGATTAATTTACCCGCTATCATTTTATGT
GGACAACATTTGGAACCGTTATGGGGTGCCTTAGAACTTTTAAAATTTAT
CACGATTACGTCAGTCGGGACGgcactgatgacgtcatttgtaTCATTAG
CGGCTTACGCGATTACGCATCGCTTCACGTTTTGGGCGGTGCAATTTTCA
GGGATGGCAGGAGTTCTTGGTGGACTTACTGTAGCATTCAAACAATTAAG
ACCTGATCAAAGATTTAATATGAAGTATAAAGAACTACGTGTTCATgatT
TACCAATATCATGCATAATAATATTCACATTATTGGCAATCTTTCGATTG
CTACCCTACACACAACCGATCATGATGGCGTGTGGCGTTATCGTAGGGTG
GACTTACCTGCGTTTCTATCAATCTCATGGTAAAGGGATGAGGGGGGATA
TGAGCGAAGGTTTTTCAGCTGCCACGCTACTACCAACTCCTATCAGgCCA
GCAGCGAGTGTTCTTTCAGATATTTTATATCGAATCCTGGTCAGGTTTGG
TTTGTGTCAAAATCCAGTACGCACGTACGATGTCGGCGGCCCGTCGTCAA
TCACCATCAGCCTGCCGGGCTCCGATCCTGCCGACGCTGAACGAAGAAGg
AAAAAAGCTTTACGTGCATTGAACGAACGTTTAACACAAATGCAACAAAA
ATCTTCACAACAAGAGATGGAAACAATCGACGGGTGGCCTTtattagaaa
acgaaagcacGCCCTCTTCGACGCCTTCAGCCTCTGTTTCAGAAACGAAC
AATAAAGAATCACACGAGAATGAGGCTGATTCAGATTCAGACAAAAACAG
TCAAGAGAGCTTTGTGAAAGTACCGAAAGGAACGGATAGTGATTCAATAT
CAGATTAAATGCAAGTTGCAATTCATTTTTTGGTTCAATCATTTATCAGT
TCATCTGTTGTGGTGAAATCAGCATGCGGAGTTATTGTGACGGCTTATCT
GATTGGATTGATCCCTAATGCTTACGGTGTACTGTCTATCACTCCGGCAC
TATTACTACCACCAAATTTTCAAGTGTGGACACTTGTTACTGGTCTCGTC
GTAGAGAGAAGTATCATAAATGTACTGATTAATTTACCCGCTATCATTTT
ATGTGGACAACATTTGGAACCGTTATGGGGTGCCTTAGAACTTTTAAAAT
TTATCACGATTACGTCAGTCGGGACGgcactgatgacgtcatttgtaTCA
TTAGCGGCTTACGCGATTACGCATCGCTTCACGTTTTGGGCGGTGCAATT
TTCAGGGATGGCAGGAGTTCTTGGTGGACTTACTGTAGCATTCAAACAAT
TAAGACCTGATCAAAGATTTAATATGAAGTATAAAGAACTACGTGTTCAT
gatTTACCAATATCATGCATAATAATATTCACATTATTGGCAATCTTTCG
ATTGCTACCCTACACACAACCGATCATGATGGCGTGTGGCGTTATCGTAG
GGTGGACTTACCTGCGTTTCTATCAATCTCATGGTAAAGGGATGAGGGGG
GATATGAGCGAAGGTTTTTCAGCTGCCACGCTACTACCAACTCCTATCAG
gCCAGCAGCGAGTGTTCTTTCAGATATTTTATATCGAATCCTGGTCAGGT
TTGGTTTGTGTCAAAATCCAGTACGCACGTACGATGTCGGCGGCCCGTCG
TCAATCACCATCAGCCTGCCGGGCTCCGATCCTGCCGACGCTGAACGAAG
AAGgAAAAAAGCTTTACGTGCATTGAACGAACGTTTAACACAAATGCAAC
AAAAATCTTCACAACAAGAGATGGAAACAATCGACGGGTGGCCTTtatta
gaaaacgaaagcacGCCCTCTTCGACGCCTTCAGCCTCTGTTTCAGAAAC
GAACAATAAAGAATCACACGAGAATGAGGCTGATTCAGATTCAGACAAAA
ACAGTCAAGAGAGCTTTGTGAAAGTACCGAAAGGAACGGATAGTGATTCA
ATATCAGATTAAATGCAAGTTGCAATTCATTTTTTGGTTCAATCATTTAT
CAGTTCATCTGTTGTGGTGAAATCAGCATGCGGAGTTATTGTGACGGCTT
ATCTGATTGGATTGATCCCTAATGCTTACGGTGTACTGTCTATCACTCCG
GCACTATTACTACCACCAAATTTTCAAGTGTGGACACTTGTTACTGGTCT
CGTCGTAGAGAGAAGTATCATAAATGTACTGATTAATTTACCCGCTATCA
TTTTATGTGGACAACATTTGGAACCGTTATGGGGTGCCTTAGAACTTTTA
AAATTTATCACGATTACGTCAGTCGGGACGgcactgatgacgtcatttgt
aTCATTAGCGGCTTACGCGATTACGCATCGCTTCACGTTTTGGGCGGTGC
AATTTTCAGGGATGGCAGGAGTTCTTGGTGGACTTACTGTAGCATTCAAA
CAATTAAGACCTGATCAAAGATTTAATATGAAGTATAAAGAACTACGTGT
TCATgatTTACCAATATCATGCATAATAATATTCACATTATTGGCAATCT
TTCGATTGCTACCCTACACACAACCGATCATGATGGCGTGTGGCGTTATC
GTAGGGTGGACTTACCTGCGTTTCTATCAATCTCATGGTAAAGGGATGAG
GGGGGATATGAGCGAAGGTTTTTCAGCTGCCACGCTACTACCAACTCCTA
TCAGgCCAGCAGCGAGTGTTCTTTCAGATATTTTATATCGAATCCTGGTC
AGGTTTGGTTTGTGTCAAAATCCAGTACGCACGTACGATGTCGGCGGCCC
GTCGTCAATCACCATCAGCCTGCCGGGCTCCGATCCTGCCGACGCTGAAC
GAAGAAGgAAAAAAGCTTTACGTGCATTGAACGAACGTTTAACACAAATG
CAACAAAAATCTTCACAACAAGAGATGGAAACAATCGACGGGTGGCCTTt
attagaaaacgaaagcacGCCCTCTTCGACGCCTTCAGCCTCTGTTTCAG
AAACGAACAATAAAGAATCACACGAGAATGAGGCTGATTCAGATTCAGAC
AAAAACAGTCAAGAGAGCTTTGTGAAAGTACCGAAAGGAACGGATAGTGA
TTCAATATCAGATTAAATGCAAGTTGCAATTCATTTTTTGGTTCAATCAT
TTATCAGTTCATCTGTTGTGGTGAAATCAGCATGCGGAGTTATTGTGACG
GCTTATCTGATTGGATTGATCCCTAATGCTTACGGTGTACTGTCTATCAC
TCCGGCACTATTACTACCACCAAATTTTCAAGTGTGGACACTTGTTACTG
GTCTCGTCGTAGAGAGAAGTATCATAAATGTACTGATTAATTTACCCGCT
ATCATTTTATGTGGACAACATTTGGAACCGTTATGGGGTGCCTTAGAACT
TTTAAAATTTATCACGATTACGTCAGTCGGGACGgcactgatgacgtcat
ttgtaTCATTAGCGGCTTACGCGATTACGCATCGCTTCACGTTTTGGGCG
GTGCAATTTTCAGGGATGGCAGGAGTTCTTGGTGGACTTACTGTAGCATT
CAAACAATTAAGACCTGATCAAAGATTTAATATGAAGTATAAAGAACTAC
GTGTTCATgatTTACCAATATCATGCATAATAATATTCACATTATTGGCA
ATCTTTCGATTGCTACCCTACACACAACCGATCATGATGGCGTGTGGCGT
TATCGTAGGGTGGACTTACCTGCGTTTCTATCAATCTCATGGTAAAGGGA
TGAGGGGGGATATGAGCGAAGGTTTTTCAGCTGCCACGCTACTACCAACT
CCTATCAGgCCAGCAGCGAGTGTTCTTTCAGATATTTTATATCGAATCCT
GGTCAGGTTTGGTTTGTGTCAAAATCCAGTACGCACGTACGATGTCGGCG
GCCCGTCGTCAATCACCATCAGCCTGCCGGGCTCCGATCCTGCCGACGCT
GAACGAAGAAGgAAAAAAGCTTTACGTGCATTGAACGAACGTTTAACACA
AATGCAACAAAAATCTTCACAACAAGAGATGGAAACAATCGACGGGTGGC
CTTtattagaaaacgaaagcacGCCCTCTTCGACGCCTTCAGCCTCTGTT
TCAGAAACGAACAATAAAGAATCACACGAGAATGAGGCTGATTCAGATTC
AGACAAAAACAGTCAAGAGAGCTTTGTGAAAGTACCGAAAGGAACGGATA
GTGATTCAATATCAGATTAAATGCAAGTTGCAATTCATTTTTTGGTTCAA
TCATTTATCAGTTCATCTGTTGTGGTGAAATCAGCATGCGGAGTTATTGT
GACGGCTTATCTGATTGGATTGATCCCTAATGCTTACGGTGTACTGTCTA
TCACTCCGGCACTATTACTACCACCAAATTTTCAAGTGTGGACACTTGTT
ACTGGTCTCGTCGTAGAGAGAAGTATCATAAATGTACTGATTAATTTACC
CGCTATCATTTTATGTGGACAACATTTGGAACCGTTATGGGGTGCCTTAG
AACTTTTAAAATTTATCACGATTACGTCAGTCGGGACGgcactgatgacg
tcatttgtaTCATTAGCGGCTTACGCGATTACGCATCGCTTCACGTTTTG
GGCGGTGCAATTTTCAGGGATGGCAGGAGTTCTTGGTGGACTTACTGTAG
CATTCAAACAATTAAGACCTGATCAAAGATTTAATATGAAGTATAAAGAA
CTACGTGTTCATgatTTACCAATATCATGCATAATAATATTCACATTATT
GGCAATCTTTCGATTGCTACCCTACACACAACCGATCATGATGGCGTGTG
GCGTTATCGTAGGGTGGACTTACCTGCGTTTCTATCAATCTCATGGTAAA
GGGATGAGGGGGGATATGAGCGAAGGTTTTTCAGCTGCCACGCTACTACC
AACTCCTATCAGgCCAGCAGCGAGTGTTCTTTCAGATATTTTATATCGAA
TCCTGGTCAGGTTTGGTTTGTGTCAAAATCCAGTACGCACGTACGATGTC
GGCGGCCCGTCGTCAATCACCATCAGCCTGCCGGGCTCCGATCCTGCCGA
CGCTGAACGAAGAAGgAAAAAAGCTTTACGTGCATTGAACGAACGTTTAA
CACAAATGCAACAAAAATCTTCACAACAAGAGATGGAAACAATCGACGGG
TGGCCTTtattagaaaacgaaagcacGCCCTCTTCGACGCCTTCAGCCTC
TGTTTCAGAAACGAACAATAAAGAATCACACGAGAATGAGGCTGATTCAG
ATTCAGACAAAAACAGTCAAGAGAGCTTTGTGAAAGTACCGAAAGGAACG
GATAGTGATTCAATATCAGATTAAATGCAAGTTGCAATTCATTTTTTGGT
TCAATCATTTATCAGTTCATCTGTTGTGGTGAAATCAGCATGCGGAGTTA
TTGTGACGGCTTATCTGATTGGATTGATCCCTAATGCTTACGGTGTACTG
TCTATCACTCCGGCACTATTACTACCACCAAATTTTCAAGTGTGGACACT
TGTTACTGGTCTCGTCGTAGAGAGAAGTATCATAAATGTACTGATTAATT
TACCCGCTATCATTTTATGTGGACAACATTTGGAACCGTTATGGGGTGCC
TTAGAACTTTTAAAATTTATCACGATTACGTCAGTCGGGACGgcactgat
gacgtcatttgtaTCATTAGCGGCTTACGCGATTACGCATCGCTTCACGT
TTTGGGCGGTGCAATTTTCAGGGATGGCAGGAGTTCTTGGTGGACTTACT
GTAGCATTCAAACAATTAAGACCTGATCAAAGATTTAATATGAAGTATAA
AGAACTACGTGTTCATgatTTACCAATATCATGCATAATAATATTCACAT
TATTGGCAATCTTTCGATTGCTACCCTACACACAACCGATCATGATGGCG
TGTGGCGTTATCGTAGGGTGGACTTACCTGCGTTTCTATCAATCTCATGG
TAAAGGGATGAGGGGGGATATGAGCGAAGGTTTTTCAGCTGCCACGCTAC
TACCAACTCCTATCAGgCCAGCAGCGAGTGTTCTTTCAGATATTTTATAT
CGAATCCTGGTCAGGTTTGGTTTGTGTCAAAATCCAGTACGCACGTACGA
TGTCGGCGGCCCGTCGTCAATCACCATCAGCCTGCCGGGCTCCGATCCTG
CCGACGCTGAACGAAGAAGgAAAAAAGCTTTACGTGCATTGAACGAACGT
TTAACACAAATGCAACAAAAATCTTCACAACAAGAGATGGAAACAATCGA
CGGGTGGCCTTtattagaaaacgaaagcacGCCCTCTTCGACGCCTTCAG
CCTCTGTTTCAGAAACGAACAATAAAGAATCACACGAGAATGAGGCTGAT
TCAGATTCAGACAAAAACAGTCAAGAGAGCTTTGTGAAAGTACCGAAAGG
AACGGATAGTGATTCAATATCAGATTAAATGCAAGTTGCAATTCATTTTT
TGGTTCAATCATTTATCAGTTCATCTGTTGTGGTGAAATCAGCATGCGGA
GTTATTGTGACGGCTTATCTGATTGGATTGATCCCTAATGCTTACGGTGT
ACTGTCTATCACTCCGGCACTATTACTACCACCAAATTTTCAAGTGTGGA
CACTTGTTACTGGTCTCGTCGTAGAGAGAAGTATCATAAATGTACTGATT
AATTTACCCGCTATCATTTTATGTGGACAACATTTGGAACCGTTATGGGG
TGCCTTAGAACTTTTAAAATTTATCACGATTACGTCAGTCGGGACGgcac
tgatgacgtcatttgtaTCATTAGCGGCTTACGCGATTACGCATCGCTTC
ACGTTTTGGGCGGTGCAATTTTCAGGGATGGCAGGAGTTCTTGGTGGACT
TACTGTAGCATTCAAACAATTAAGACCTGATCAAAGATTTAATATGAAGT
ATAAAGAACTACGTGTTCATgatTTACCAATATCATGCATAATAATATTC
ACATTATTGGCAATCTTTCGATTGCTACCCTACACACAACCGATCATGAT
GGCGTGTGGCGTTATCGTAGGGTGGACTTACCTGCGTTTCTATCAATCTC
ATGGTAAAGGGATGAGGGGGGATATGAGCGAAGGTTTTTCAGCTGCCACG
CTACTACCAACTCCTATCAGgCCAGCAGCGAGTGTTCTTTCAGATATTTT
ATATCGAATCCTGGTCAGGTTTGGTTTGTGTCAAAATCCAGTACGCACGT
ACGATGTCGGCGGCCCGTCGTCAATCACCATCAGCCTGCCGGGCTCCGAT
CCTGCCGACGCTGAACGAAGAAGgAAAAAAGCTTTACGTGCATTGAACGA
ACGTTTAACACAAATGCAACAAAAATCTTCACAACAAGAGATGGAAACAA
TCGACGGGTGGCCTTtattagaaaacgaaagcacGCCCTCTTCGACGCCT
TCAGCCTCTGTTTCAGAAACGAACAATAAAGAATCACACGAGAATGAGGC
TGATTCAGATTCAGACAAAAACAGTCAAGAGAGCTTTGTGAAAGTACCGA
AAGGAACGGATAGTGATTCAATATCAGATTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013303	XLOC_013303	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00023688-protein	TCONS_00023688-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000458	supercontig	sc0000458:184378..189584 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
47.0772	46.6775	49.7486	49.3319	32.5814	23.5601	36.4392	37.0413	30.5978	32.6777	27.6416	25.7382	20.0137	19.9492	19.5423	22.2561	29.2661	29.8496	16.2605	20.1848	17.8664	19.1801	24.3595	25.0319	27.7971	28.3709	15.3497	11.5731	22.999	19.2965

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR013861	DUF1751_Mem_euk
IPR022764	Peptidase_S54_rhomboid_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006890	retrograde vesicle-mediated transport, Golgi to ER
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004252	serine-type endopeptidase activity

Blast

[Close]

BLAST of TCONS_00023688 vs. Swiss-Prot (Human)
Match: TM115 (Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.623e-51
Identity = 104/265 (39.25%), Postives = 161/265 (60.75%), Query Frame = 1

Query:  178 SSSVVVKSACGVIVTAYLIGLIPNAYGVLSITPALLLPPNFQVWTLVTGLVVERSIINVLINLPAIILCGQHLEPLWGALELLKFITITSVGTALMTSFVSLAAYAITHRFTF-WAVQFSGMAGVLGGLTVAFKQLRPDQRFNMKYKELRVHDLPISCIIIFTLLAIFRLLPYTQPIMMACGVIVGWTYLRFYQSHGKGMRGDMSEGFSAATLLPTPIRPAASVLSDILYRILVRFGLCQNPVRTYDVGGPSSITISLPGSDPAD 969
            S+SVVVK+ C  ++  YL+    +  G L++TP  L PPNF +WTL T  ++E+ + +V I+L  +++ G+ LEPLWGALELL F ++ +V   L+ +F  L  Y  +    + + V+  G  G LGG+ VA KQ   D    ++  ++RV  +P+  + +  LL +  LL          G++  W YLRFYQ H +G RGDM++ F+ AT  P  ++P   +L+++++ +LV+  +CQ  V+ YDVG PSSITISLPG+DP D
Sbjct:   18 SASVVVKALCAAVLFLYLLSFAVDT-GCLAVTPGYLFPPNFWIWTLATHGLMEQHVWDVAISLTTVVVAGRLLEPLWGALELLIFFSVVNVSVGLLGAFAYLLTYMASFNLVYLFTVRIHGALGFLGGVLVALKQTMGDC-VVLRVPQVRVSVMPMLLLALLLLLRLATLLQSPALASYGFGLLSSWVYLRFYQRHSRG-RGDMADHFAFATFFPEILQPVVGLLANLVHSLLVKVKICQKTVKRYDVGAPSSITISLPGTDPQD 279

The following BLAST results are available for this feature:

BLAST of TCONS_00023688 vs. Swiss-Prot (Human)

BLAST of TCONS_00023688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TM115	2.623e-51	39.25	Transmembrane protein 115 OS=Homo sapiens GN=TMEM1...	[more]

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TCONS_00023688 (transcript) - C. hemisphaerica