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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023681 ID=TCONS_00023681|Name=TCONS_00023681|organism=Clytia hemisphaerica|type=transcript|length=3468bpRun BLAST on NCBI protein sequence of TCONS_00023681-protein >TCONS_00023681-protein ID=TCONS_00023681-protein|Name=TCONS_00023681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1011bp MSLRDLAMELFCQFDDENKGYITQDQLLNGSCKDGLFSEFSEGQILSIFERun BLAST on NCBI transcript from alignment at sc0000458:100314..116716+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023681 ID=TCONS_00023681|Name=TCONS_00023681|organism=Clytia hemisphaerica|type=transcript|length=16403bp|location=Sequence derived from alignment at sc0000458:100314..116716+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000458:100314..116716+ >TCONS_00023681 ID=TCONS_00023681|Name=TCONS_00023681|organism=Clytia hemisphaerica|type=CDS|length=36432bp|location=Sequence derived from alignment at sc0000458:100314..116716+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023681 vs. Swiss-Prot (Human)
Match: RAB6B (Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 3.661e-34 Identity = 66/161 (40.99%), Postives = 100/161 (62.11%), Query Frame = 1
Query: 2485 FKVIFCGDANVGKSSIIQRICFDSFSEEREPTMQIDSYSKTVPHGENIVNLSIWDTLGQERFNSIPRSYYRKSDIVLVGYDITDEMSFSNLQTWLLDIKEFTDDNVLVIIVGNKVDSEGDRKISCAKAEQYAKAHNAMFMEVSAKSGQNIQSLLHIMSSTL 2967
FK++F G+ +VGK+S+I R +DSF + T+ ID SKT+ + V L +WDT GQERF S+ SY R S + +V YDIT+ SF W+ D++ +V++++VGNK D R+I+ + EQ AK + MF+E SAK+G N++ L ++S L
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 174 The following BLAST results are available for this feature:
BLAST of TCONS_00023681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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