TCONS_00023653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023653
Unique NameTCONS_00023653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length940

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023653 ID=TCONS_00023653|Name=TCONS_00023653|organism=Clytia hemisphaerica|type=transcript|length=940bp
ATCAGGAAAAACTCTTCATAAATATCTACGACAACACAGTGATGTCACAC
TCTCTGTGATAAACTTTGAATTGAAGAATATTCAAGTTGCTAATGTTCCA
AGCGaatatCAAACCTCTAGTCAATGGACATTATTGGAAATACCACAATT
GAAACTTGAATGGATACTCCATCTAAAAGTGAAAGTGTTTTCTTTTGACA
TCACTACCGGCAACATTGTGGTGATCGAGGGCCTGTTCAAACTCGCTTAC
AATATCAATGCTGATAAACACAAATACCAGGTGAGAACGATAGACGAGAA
AGGCAAGCTCTTAACAACCTACAAACTCTACGTTGACGATGTTGAACGGG
AAAAATTTCAAGAGTTCACACTAATCCAACAATTCGATGCAAGTTTGGCA
GCTCATGttgtgaaagttattgtgaacAAGAATGTGGTGTACGTTGGAAA
AACCAAAGCTACAGCCTACAGAAACGCTCAATTAAAAACAGGAGTTATTG
AAACTAAGATAGCAGATTTTTACATGTTTAATCTTTGACTGTCTCCGAAA
TTTTTACGTTTATgaaaaatggggggggggggggggggggttNTAGATTA
CCGTAAAACCTTTTTCCGGGGGATATGTTTTTGATTTGCATCAGTATTTT
CAGCCTAAGACACAGAAGGTATTGGTAATTCTTGCCCCCTGATGAGTGTC
CATGACTTAATATAGATTTTAACATTAGGCTGCGGGAAAATTACGCATCT
CTCCACATTGAATTTTGAGTGATCGTCATCTTTCTAATTTGTggtatttt
aaagaaaaaaggctTCTCTACTATTTCTCAGGTTATGgaagattattttg
aaattagaatTCTACGAGAAACAGTTCCAACGATTTTCAAACATGTTCAA
AGTATTTTTAGAGTCCTTCAAAGTCACAATTAAATGTCTA
Run BLAST on NCBI

protein sequence of TCONS_00023653-protein

>TCONS_00023653-protein ID=TCONS_00023653-protein|Name=TCONS_00023653-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
SGKTLHKYLRQHSDVTLSVINFELKNIQVANVPSEYQTSSQWTLLEIPQL
KLEWILHLKVKVFSFDITTGNIVVIEGLFKLAYNINADKHKYQVRTIDEK
GKLLTTYKLYVDDVEREKFQEFTLIQQFDASLAAHVVKVIVNKNVVYVGK
TKATAYRNAQLKTGVIETKIADFYMFNL
Run BLAST on NCBI

transcript from alignment at sc0000457:240368..242858-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023653 ID=TCONS_00023653|Name=TCONS_00023653|organism=Clytia hemisphaerica|type=transcript|length=2491bp|location=Sequence derived from alignment at sc0000457:240368..242858- (Clytia hemisphaerica)
ATCAGGAAAAACTCTTCATAAATATCTACGACAACACAGTGATGTCACAC
TCTCTGTGATAAACTTTGAATTGAAGAATATTCAAGTTGCTAATGTTCCA
AGCGGTAAGATTGAAAGATTTCCAAATTATAAATGCTAAGTGTTTTGCAT
TTCATTTCTTTCATTTGGATGCAAATTTTTCAGAAAATGAGCTAAAACGC
TAAGTAAACCAAGCCCTGATTCGTAAATTGAAGTCATTTATAAAGAAAAT
GTGTATCGACATATTGACTGTAAACTAATGTTTTTTTTTACAGAATATCA
AACCTCTAGTCAATGGACATTATTGGAAATACCACAATTGAAACTTGAAT
GGATACTCCATCTAAAAGTGAAAGTGTTTTCTTTTGACATCACTACCGGC
AACATTGTGGTGATCGAGGGCCTGTTCAAACTCGCTTACAATATCAATGC
TGATAAACACAAATACCAGGTAGGACAAGTGGCTTTTTATACTTTTGTAG
TTTCTTTGGTGATTTTTTATAATTATTGTGATTGTGTGACTTACATTATC
ACTTTTTACCCGGGGGTAAAAACGAGCATACGTGCAGATGGGCTTTTCCA
GAAAAAAATTGAATATGGGGGTGGAGGAGATTTACCCCTCGGACATTGTG
ACTTTTGACCCCCTGGACAGCAGGTCCAACCCCCCCNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CCCCCCCCCCGGACAAGCATTAGTTGACCCTCTGGACACTCAAAGTTACC
CCCATACAAAGTTTACCCCCGGACAAGGCAAATTTTGTAGATTTTTCACT
ACCCCCCCGGACACTATATCCTCCAACCCCCATTGTACAAACATTTTCTG
GAAGAGCCCAATACACCTTTCCTGTATTTCGCGAAACAGCTGCGCGCGCA
TATTTTGTTGCTCTCTACCATTTGGTCTTTTGGGTAAAAAAGCCCCTTTT
TGCCTGCGTTTCCTCAGTGATAAAAATGGTTTTTTGAGCTTTTCTTAAGT
TCTGTCCGACAGAATCCTCTCAAATATTGATATGTTCTTTCCTTTTATGA
TATTATTCCAAAAACATATCGCAAGGGTTAGAAGCTGAAAACCAACTTTC
CCTAACCCCTAGCAGGTAAAAAAGCGTTTGTCTACCTCCCAGACAATTTC
ATACACAACGGTGGAGCAGGCATTTTCTCGGGCTATTTCTGAGAAGTTGG
AATATCGGGAAAAGTGTATTAACAATATTCAAATTTTGAAAAGCCTGGGA
AAGCCTGAAGAAATTATTCAAAAATGCTTTAAAATATGTTTTCACATTTT
ATTGCACTTTGTCTTTTGGAAATACTTTAAGGTGAGAACGATAGACGAGA
AAGGCAAGCTCTTAACAACCTACAAACTCTACGTTGACGATGTTGAACGG
GAAAAATTTCAAGAGTTCACACTAATCCAACAATTCGATGCAAGTTTGGC
AGCTCATGTTGTGAAAGTTATTGTGAACAAGAATGTGGTGTACGTTGGAA
AAACCAAAGCTACAGCCTACAGAAACGCTCAATTAAAAACAGGAGTTATT
GAAACTAAGATAGCAGATTTTTACATGTTTAATCTTTGACTGTCTCCGAA
ATTTTTACGTTTATGAAAAATGGGGGGGGGGGGGGGGGGGGTTNTAGATT
ACCGTAAAACCTTTTTCCGGGGGATATGTTTTTGATTTGCATCAGTATTT
TCAGCCTAAGACACAGAAGGTATTGGTAATTCTTGCCCCCTGATGAGTGT
CCATGACTTAATATAGATTTTAACATTAGGCTGCGGGAAAATTACGCATC
TCTCCACATTGAATTTTGAGTGATCGTCATCTTTCTAATTTGTGGTATTT
TAAAGAAAAAAGGCTTCTCTACTATTTCTCAGGTTATGGAAGATTATTTT
GAAATTAGAATTCTACGAGAAACAGTTCCAACGATTTTCAAACATGTTCA
AAGTATTTTTAGAGTCCTTCAAAGTCACAATTAAATGTCTA

Coding sequence (CDS) from alignment at sc0000457:240368..242858-

>TCONS_00023653 ID=TCONS_00023653|Name=TCONS_00023653|organism=Clytia hemisphaerica|type=CDS|length=1611bp|location=Sequence derived from alignment at sc0000457:240368..242858- (Clytia hemisphaerica)
GTGAGAACGATAGACGAGAAAGGCAAGCTCTTAACAACCTACAAACTCTA
CGTTGACGATGTTGAACGGGAAAAATTTCAAGAGTTCACACTAATCCAAC
AATTCGATGCAAGTTTGGCAGCTCATGTTGTGAAAGTTATTGTGAACAAG
AATGTGGTGTACGTTGGAAAAACCAAAGCTACAGCCTACAGAAACGCTCA
ATTAAAAACAGGAGTTATTGAAACTAAGATAGCAGATTTTTACATGTTTA
ATCTTTGAAATATCAAACCTCTAGTCAATGGACATTATTGGAAATACCAC
AATTGAAACTTGAATGGATACTCCATCTAAAAGTGAAAGTGTTTTCTTTT
GACATCACTACCGGCAACATTGTGGTGATCGAGGGCCTGTTCAAACTCGC
TTACAATATCAATGCTGATAAACACAAATACCAGTCAGGAAAAACTCTTC
ATAAATATCTACGACAACACAGTGATGTCACACTCTCTGTGATAAACTTT
GAATTGAAGAATATTCAAGTTGCTAATGTTCCAAGCGGTGAGAACGATAG
ACGAGAAAGGCAAGCTCTTAACAACCTACAAACTCTACGTTGACGATGTT
GAACGGGAAAAATTTCAAGAGTTCACACTAATCCAACAATTCGATGCAAG
TTTGGCAGCTCATGTTGTGAAAGTTATTGTGAACAAGAATGTGGTGTACG
TTGGAAAAACCAAAGCTACAGCCTACAGAAACGCTCAATTAAAAACAGGA
GTTATTGAAACTAAGATAGCAGATTTTTACATGTTTAATCTTTGAAATAT
CAAACCTCTAGTCAATGGACATTATTGGAAATACCACAATTGAAACTTGA
ATGGATACTCCATCTAAAAGTGAAAGTGTTTTCTTTTGACATCACTACCG
GCAACATTGTGGTGATCGAGGGCCTGTTCAAACTCGCTTACAATATCAAT
GCTGATAAACACAAATACCAGTCAGGAAAAACTCTTCATAAATATCTACG
ACAACACAGTGATGTCACACTCTCTGTGATAAACTTTGAATTGAAGAATA
TTCAAGTTGCTAATGTTCCAAGCGGTGAGAACGATAGACGAGAAAGGCAA
GCTCTTAACAACCTACAAACTCTACGTTGACGATGTTGAACGGGAAAAAT
TTCAAGAGTTCACACTAATCCAACAATTCGATGCAAGTTTGGCAGCTCAT
GTTGTGAAAGTTATTGTGAACAAGAATGTGGTGTACGTTGGAAAAACCAA
AGCTACAGCCTACAGAAACGCTCAATTAAAAACAGGAGTTATTGAAACTA
AGATAGCAGATTTTTACATGTTTAATCTTTGAAATATCAAACCTCTAGTC
AATGGACATTATTGGAAATACCACAATTGAAACTTGAATGGATACTCCAT
CTAAAAGTGAAAGTGTTTTCTTTTGACATCACTACCGGCAACATTGTGGT
GATCGAGGGCCTGTTCAAACTCGCTTACAATATCAATGCTGATAAACACA
AATACCAGTCAGGAAAAACTCTTCATAAATATCTACGACAACACAGTGAT
GTCACACTCTCTGTGATAAACTTTGAATTGAAGAATATTCAAGTTGCTAA
TGTTCCAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013280XLOC_013280Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023653-proteinTCONS_00023653-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023653-exon-sc0000457-1575043694:242755..242858TCONS_00023653-exon-sc0000457-1575043694:242755..242858Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1575043694:242390..242565TCONS_00023653-exon-sc0000457-1575043694:242390..242565Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1575043694:240368..241027TCONS_00023653-exon-sc0000457-1575043694:240368..241027Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1510915933:242755..242858TCONS_00023653-exon-sc0000457-1510915933:242755..242858Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1510915933:242390..242565TCONS_00023653-exon-sc0000457-1510915933:242390..242565Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1510915933:240368..241027TCONS_00023653-exon-sc0000457-1510915933:240368..241027Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1491911889:242755..242858TCONS_00023653-exon-sc0000457-1491911889:242755..242858Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1491911889:242390..242565TCONS_00023653-exon-sc0000457-1491911889:242390..242565Clytia hemisphaericaexon
TCONS_00023653-exon-sc0000457-1491911889:240368..241027TCONS_00023653-exon-sc0000457-1491911889:240368..241027Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000457supercontigsc0000457:240368..242858 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0970663	0	0.0549517	0	0.261799	0.103438	0.187191	0.350492	0.122694	0.101317	0.0491706	0.0323228	0.0322779	0.0335209	0	0	0.0728673	0.0746867	0.0515918	0	0.0938492	0	0.946002	2.17543	3.12647	5.81313	0.133097	0.0710225	0	0.054883
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top