TCONS_00023560 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023560
Unique NameTCONS_00023560
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023560 ID=TCONS_00023560|Name=TCONS_00023560|organism=Clytia hemisphaerica|type=transcript|length=1594bp
AGAGGATTTATAAGAGGAGTTtccatgggaataaaatcataaGATGGTAT
CAGAATCAAAAAGTTATCAAATATTTGAAAGTCCTCGAGATATTTGGTTG
ATGTGTAGGTGTTTTATCAGACTATTGTTTTATGAGATCCCTATAAAACG
TCGAATGTTGAAAGCTGTGAGGTCACTTGGATTTGTCAAGCTCAGATAAC
TCAAGAATGAAGCTTCTCTTGTTATTCGCCTTCCTCTCCGTGGCTCTTGC
CACCGACGGTGTGCCACCGCTCCAATACCAACTCCACATCCCAGACAAAT
GTGAAGATGTTCTTGCCATCAAAGTGTGTGACAGTCTCCGTAAAACTGCC
ACCGCATTGAAATTGAAATCCGACGAAGTTAAGAATGCAGTTGTTGATGC
TTACCAAAAAGGATTGGCAACTACCACTGAGATTGCCAATGCTGCTGAAG
ATTTCTTGGTCAACAAAGTCATGACAAAGAAATGTGAAGACTTCACTAGT
GCTGATaacTGCCAAAAACTCCGTGACATGGCCGCCAAAGCCAAAGTCGA
AGCTTCAAAAGTCAAAGCTTACGTTTTAAAACAAGTCGCCgtgttgaaaa
caaaaacatgcgAAGATTTCATTATGTCCGTCGATAAATGCACCAAATTG
AGAGACTTGGCCGCCAAAGTGAAAGtcaagggtgaggaattcaaagtCAT
GGTTTTGGCTGCTCTCCAAGAAGCTCAACAGAAGGGTACTGATAAAGTGA
AGGAGGTTTACAACAACATCAAAAACTACATTGTTTCCACAAGATGTGAA
GATATGTTCAACCCAGACTTGTGCGCCGCCATGAGAAAATATGCTGCAAA
GACCAAAGTTGCACTTCCAAAGATTTTGGAAACCTCATTTGAAGTCTTGA
AGAAAGGAGTCAGCGTTGGAAAAGCtatggttgaaaaagttttcgaTATT
GTCGACTATTTTTATGATTGCGAAGATGTCTTTGATAAGGGATCTTGTGA
TCGTCTCAGAAACTGGGCTGCCACTTTGAAAATCAAAGCTGATGAATTCG
AAGTTGCCGTCCGAAAATACGTCCGTATTGCTGTCGAAAAAGCGACATCT
TTTTACAAAACTCTCAAAGATTTCATCAAAGAGAAATTCTACTGTAGAAT
CTGGCCATCATCCAGCAAATGTCAAATGTCTGACGCTGATGTCATTGCTA
TGATCGCTGAAGACGATATGGGAACAAAAGTTGAAGCATGGAAACAAAAG
ATCTTGGATATTCTCAACAAACGATTCCCTGGTTTGGACCAAAAAGTACG
TGAACACATCAAGACCATcatcgaaaaatcaaaatctttttggCAATTGA
TGAGAAATTTTgccaaagaaatcaaaaaccaAGGACAACAAGTCAGCCAA
AAAATCCGTGAAGCCCTCCGAAAATTAATGGTTGAAATCGCTACCATGTA
AATAAATTGGAAATATCTCTATCAACTATCATTTGAAAATACAATCTttc
attcagaaaaaaatttctctccATTGATCATTGGCATTTTAAATCCATAT
TAACTTTCATCCCATTCACGAAAATTCGTTAAAAGTCTAAAAGA
Run BLAST on NCBI

protein sequence of TCONS_00023560-protein

>TCONS_00023560-protein ID=TCONS_00023560-protein|Name=TCONS_00023560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MKLLLLFAFLSVALATDGVPPLQYQLHIPDKCEDVLAIKVCDSLRKTATA
LKLKSDEVKNAVVDAYQKGLATTTEIANAAEDFLVNKVMTKKCEDFTSAD
NCQKLRDMAAKAKVEASKVKAYVLKQVAVLKTKTCEDFIMSVDKCTKLRD
LAAKVKVKGEEFKVMVLAALQEAQQKGTDKVKEVYNNIKNYIVSTRCEDM
FNPDLCAAMRKYAAKTKVALPKILETSFEVLKKGVSVGKAMVEKVFDIVD
YFYDCEDVFDKGSCDRLRNWAATLKIKADEFEVAVRKYVRIAVEKATSFY
KTLKDFIKEKFYCRIWPSSSKCQMSDADVIAMIAEDDMGTKVEAWKQKIL
DILNKRFPGLDQKVREHIKTIIEKSKSFWQLMRNFAKEIKNQGQQVSQKI
REALRKLMVEIATM
Run BLAST on NCBI

transcript from alignment at sc0000456:180213..184026+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023560 ID=TCONS_00023560|Name=TCONS_00023560|organism=Clytia hemisphaerica|type=transcript|length=3814bp|location=Sequence derived from alignment at sc0000456:180213..184026+ (Clytia hemisphaerica)
AGAGGATTTATAAGAGGAGTTtccatgggaataaaatcataaGATGGTAT
CAGAATCAAAAAGTTATCAAATATTTGAAAGTCCTCGAGATATTTGGTTG
ATGTGTAGGTGTTTTATCAGACTATTGTTTTATGAGATCCCTATAAAACG
TCGAATGTTGAAAGCTGTGAGGTCACTTGGATTTGTCAAGCTCAGATAAC
TCAAGGTAAGTTGCCACAGTATTTGAAATATCTAATTCTCCTGCTGTCGA
AACTTTATTTTTGATTACCGATCTCTTTTAGTTACAATACAGGCATTTGG
ATAAGGATTTGGCTATGGCCCAATGTTCTGCTTATGCTTCATAAATTCGA
TCAAATTCATTTAAAACCTTTGTTTTTAGAATGAAGCTTCTCTTGTTATT
CGCCTTCCTCTCCGTGGCTCTTGCCACCGACGGTGTGCCACCGCTCCAAT
ACCAACTCCACATCCCAGACAAATGTGAAGATGTTCTTGCCATCAAAGTG
TGTGACAGTCTCCGTAAAACTGCCACCGCATTGAAATTGAAATCCGACGA
AGTTAAGAATGCAGTTGTTGATGCTTACCAAAAAGGATTGGCAACTACCA
CTGAGATTGCCAATGCTGCTGAAGATTTCTTGGTCAACAAAGTCATGACA
AAGAAATGTGAAGACTTCACTAGTGCTGATGTAAGTGATGATTTAGATTG
AAAGTTGAAACTTGGATATATAGATTTTATAACCCAcgatatgaaaaaaa
taactaaaacaCTTTGGCACTACTTACaccttttgaattttattttcctA
CCCTCAATAAACACACTCCACTGAGTCCAATGTCCAATGGCCAACTTCGC
CTAACGATTACCAGCCCAGCTGTTTCGTGAATTTGATATGAATATTTTgc
atttatattttctttttagaacTGCCAAAAACTCCGTGACATGGCCGCCA
AAGCCAAAGTCGAAGCTTCAAAAGTCAAAGCTTACGTTTTAAAACAAGTC
GCCgtgttgaaaacaaaaacatgcgAAGATTTCATTATGTCCGTCGATGT
AAGAACTTTTTCTTATTACACTTACAGctgtaaatttttttcattgcaat
cGCAGACTATTATTGGGAAAACATGAATTTTccgaatttgaaatgttaca
ttTTTACACATTAGAAATGCACCAAATTGAGAGACTTGGCCGCCAAAGTG
AAAGtcaagggtgaggaattcaaagtCATGGTTTTGGCTGCTCTCCAAGA
AGCTCAACAGAAGGGTACTGATAAAGTGAAGGAGGTTTACAACAACATCA
AAAACTACATTGTTTCCACAAGATGTGAAGATATGTTCAACCCAGACGTA
AGTAAAAATCTCTTATATATGGACCCGCTACTGGGGGACGACTCAGCGGC
TGGGATTAGGGATTAGATTAGATTAGAGTCTACGTTtaactgaactttgc
tttctggtGATTTTGATGGCGCTGTGTCCAGTGAAGTACCAGGTAATTGC
CATCTTGGAGATTTTCACTTTTCAGATtatatgaaaaaaacaaaataaat
cgatGAAATATATTCTAAAACCCAATCAATGCTTAtgaaactatataaaa
acatgataaacaaAATACCTCCAAGATTTGGTCTATTGGTTATCGTTTTC
TGGTTGTTTTCCTCAAAAAAGagactggatctagtggcaCGGATTTGCTA
GGACCTCAAGTAAAGACAAAAATGGAGTCTGTTAAATTACACCGGGCTAC
TTATCAGGCGTCTtcaagtctatcaaaaagctatgaGTGGCCCTGGGCTA
GGATTATATTGATCTTGACCCGGGCATAAAACGTGGAAATTCTTCACTTa
tcattcttttttcttttttaattcaattaaaagtggcataaaatagcact
ttgagtCCCTCACAAAAATCTCCCTGCTTTTCCAGGTATGGCCAACTAAT
ATTTGACCCGATAACTTTAGTTTCAAGCCGgtgaaaatattggaaaaagc
AAGACACCAAAAGTGCCTTTGTCAAGCAAGAGGGTCAAGATTTTCTAGCC
TCCTtcttcccaaatctctcatatCAAAATTCACGCGAAAAGCGAACTTC
CATGTTGTTGAAGATTACGCGTGTTTAAATTGTTGAATTATCTAATATCG
ATTTTCCTTTAGTTGTGCGCCGCCATGAGAAAATATGCTGCAAAGACCAA
AGTTGCACTTCCAAAGATTTTGGAAACCTCATTTGAAGTCTTGAAGAAAG
GAGTCAGCGTTGGAAAAGCtatggttgaaaaagttttcgaTATTGTCGAC
TATTTTTATGATTGCGAAGATGTCTTTGATAAGGGAGTAAGTATCTTGCT
TGCTTGATTTTTAAACATATACATTACTGATTTCATTACTTAGTCGGTCT
AGAATGTCCTAGAGNAATCTTAGCTTGATTTTTAAACAAATGCATTACTG
ATTTCATTACTAAGTCGGCCCAGAAGGTCCTAGAGGGTCGCCAACTATAA
ATTAAAATCTGCAATCAAGCTTTGTATAGTGGTCTACGAACCAACTTCTT
AAAACTGTCTAATTCTAATCCTCTCCTTTTCGTTTCAGTCTTGTGATCGT
CTCAGAAACTGGGCTGCCACTTTGAAAATCAAAGCTGATGAATTCGAAGT
TGCCGTCCGAAAATACGTCCGTATTGCTGTCGAAAAAGCGACATCTTTTT
ACAAAACTCTCAAAGATTTCATCAAAGAGAAATTCTACTGTAGAATCTGG
CCATCATCCAGCAAATGTCAAATGTCTGACGCTGATGTCATTGCTATGAT
CGCTGAAGACGATATGGGAACAAAAGTTGAAGCATGGAAACAAAAGATCT
TGGATAGTAAGTTTGCATATCACTTTTCCcacgttttttttatacaagaa
aatccaaaattatgtaagcctttgaatgttcttaactatttgcgttttaa
gcccaaaaatatttttagcatGTTATCTTCgccattttgtaattttgtcc
attttcccaagaaatggggtgttttagagtcggaaaagccttaaaatgct
cttgttcttaatattttggccatcgaagccttatgttacttatgttctca
tatagtttgttcatataaaaaacgtgtttaaTATTAGAGTATTATTCTCA
AAGCAAAAGGGCAACTTTAAAACCTAGACTTAAGCACGAGTTTACACAAG
AAACTTGAATGAAACTGTTTTACCAAAGTTCCTTGGTTTACAATAAGATT
TGTCGGATAGAATGGACCTCTGAACCCATGACCTTTGATGATATCACAAT
AAACCCCTGGGTTGGCCAAAGACAGACCACAAGGATAGGTTTTTCTGAGG
GTTACAAAAgcaacaaaatattaaaatgctAAAACCACTAATAGTTAGTC
TTTCTACCAACTGTAGTACTCCGGAAGCTACCTGTTtgataaattctaaa
aataatcGCCTTTAAAATTCTCTATTTCAGTTCTCAACAAACGATTCCCT
GGTTTGGACCAAAAAGTACGTGAACACATCAAGACCATcatcgaaaaatc
aaaatctttttggCAATTGATGAGAAATTTTgccaaagaaatcaaaaacc
aAGGACAACAAGTCAGCCAAAAAATCCGTGAAGCCCTCCGAAAATTAATG
GTTGAAATCGCTACCATGTAAATAAATTGGAAATATCTCTATCAACTATC
ATTTGAAAATACAATCTttcattcagaaaaaaatttctctccATTGATCA
TTGGCATTTTAAATCCATATTAACTTTCATCCCATTCACGAAAATTCGTT
AAAAGTCTAAAAGA

Coding sequence (CDS) from alignment at sc0000456:180213..184026+

>TCONS_00023560 ID=TCONS_00023560|Name=TCONS_00023560|organism=Clytia hemisphaerica|type=CDS|length=7470bp|location=Sequence derived from alignment at sc0000456:180213..184026+ (Clytia hemisphaerica)
ATGAAGCTTCTCTTGTTATTCGCCTTCCTCTCCGTGGCTCTTGCCACCGA
CGGTGTGCCACCGCTCCAATACCAACTCCACATCCCAGACAAATGTGAAG
ATGTTCTTGCCATCAAAGTGTGTGACAGTCTCCGTAAAACTGCCACCGCA
TTGAAATTGAAATCCGACGAAGTTAAGAATGCAGTTGTTGATGCTTACCA
AAAAGGATTGGCAACTACCACTGAGATTGCCAATGCTGCTGAAGATTTCT
TGGTCAACAAAGTCATGACAAAGAAATGTGAAGACTTCACTAGTGCTGAT
aacTGCCAAAAACTCCGTGACATGGCCGCCAAAGCCAAAGTCGAAGCTTC
AAAAGTCAAAGCTTACGTTTTAAAACAAGTCGCCgtgttgaaaacaaaaa
catgcgAAGATTTCATTATGTCCGTCGATAAATGCACCAAATTGAGAGAC
TTGGCCGCCAAAGTGAAAGtcaagggtgaggaattcaaagtCATGGTTTT
GGCTGCTCTCCAAGAAGCTCAACAGAAGGGTACTGATAAAGTGAAGGAGG
TTTACAACAACATCAAAAACTACATTGTTTCCACAAGATGTGAAGATATG
TTCAACCCAGACTTGTGCGCCGCCATGAGAAAATATGCTGCAAAGACCAA
AGTTGCACTTCCAAAGATTTTGGAAACCTCATTTGAAGTCTTGAAGAAAG
GAGTCAGCGTTGGAAAAGCtatggttgaaaaagttttcgaTATTGTCGAC
TATTTTTATGATTGCGAAGATGTCTTTGATAAGGGATCTTGTGATCGTCT
CAGAAACTGGGCTGCCACTTTGAAAATCAAAGCTGATGAATTCGAAGTTG
CCGTCCGAAAATACGTCCGTATTGCTGTCGAAAAAGCGACATCTTTTTAC
AAAACTCTCAAAGATTTCATCAAAGAGAAATTCTACTGTAGAATCTGGCC
ATCATCCAGCAAATGTCAAATGTCTGACGCTGATGTCATTGCTATGATCG
CTGAAGACGATATGGGAACAAAAGTTGAAGCATGGAAACAAAAGATCTTG
GATATTCTCAACAAACGATTCCCTGGTTTGGACCAAAAAGTACGTGAACA
CATCAAGACCATcatcgaaaaatcaaaatctttttggCAATTGATGAGAA
ATTTTgccaaagaaatcaaaaaccaAGGACAACAAGTCAGCCAAAAAATC
CGTGAAGCCCTCCGAAAATTAATGGTTGAAATCGCTACCATGTAAATGAA
GCTTCTCTTGTTATTCGCCTTCCTCTCCGTGGCTCTTGCCACCGACGGTG
TGCCACCGCTCCAATACCAACTCCACATCCCAGACAAATGTGAAGATGTT
CTTGCCATCAAAGTGTGTGACAGTCTCCGTAAAACTGCCACCGCATTGAA
ATTGAAATCCGACGAAGTTAAGAATGCAGTTGTTGATGCTTACCAAAAAG
GATTGGCAACTACCACTGAGATTGCCAATGCTGCTGAAGATTTCTTGGTC
AACAAAGTCATGACAAAGAAATGTGAAGACTTCACTAGTGCTGATaacTG
CCAAAAACTCCGTGACATGGCCGCCAAAGCCAAAGTCGAAGCTTCAAAAG
TCAAAGCTTACGTTTTAAAACAAGTCGCCgtgttgaaaacaaaaacatgc
gAAGATTTCATTATGTCCGTCGATAAATGCACCAAATTGAGAGACTTGGC
CGCCAAAGTGAAAGtcaagggtgaggaattcaaagtCATGGTTTTGGCTG
CTCTCCAAGAAGCTCAACAGAAGGGTACTGATAAAGTGAAGGAGGTTTAC
AACAACATCAAAAACTACATTGTTTCCACAAGATGTGAAGATATGTTCAA
CCCAGACTTGTGCGCCGCCATGAGAAAATATGCTGCAAAGACCAAAGTTG
CACTTCCAAAGATTTTGGAAACCTCATTTGAAGTCTTGAAGAAAGGAGTC
AGCGTTGGAAAAGCtatggttgaaaaagttttcgaTATTGTCGACTATTT
TTATGATTGCGAAGATGTCTTTGATAAGGGATCTTGTGATCGTCTCAGAA
ACTGGGCTGCCACTTTGAAAATCAAAGCTGATGAATTCGAAGTTGCCGTC
CGAAAATACGTCCGTATTGCTGTCGAAAAAGCGACATCTTTTTACAAAAC
TCTCAAAGATTTCATCAAAGAGAAATTCTACTGTAGAATCTGGCCATCAT
CCAGCAAATGTCAAATGTCTGACGCTGATGTCATTGCTATGATCGCTGAA
GACGATATGGGAACAAAAGTTGAAGCATGGAAACAAAAGATCTTGGATAT
TCTCAACAAACGATTCCCTGGTTTGGACCAAAAAGTACGTGAACACATCA
AGACCATcatcgaaaaatcaaaatctttttggCAATTGATGAGAAATTTT
gccaaagaaatcaaaaaccaAGGACAACAAGTCAGCCAAAAAATCCGTGA
AGCCCTCCGAAAATTAATGGTTGAAATCGCTACCATGTAAATGAAGCTTC
TCTTGTTATTCGCCTTCCTCTCCGTGGCTCTTGCCACCGACGGTGTGCCA
CCGCTCCAATACCAACTCCACATCCCAGACAAATGTGAAGATGTTCTTGC
CATCAAAGTGTGTGACAGTCTCCGTAAAACTGCCACCGCATTGAAATTGA
AATCCGACGAAGTTAAGAATGCAGTTGTTGATGCTTACCAAAAAGGATTG
GCAACTACCACTGAGATTGCCAATGCTGCTGAAGATTTCTTGGTCAACAA
AGTCATGACAAAGAAATGTGAAGACTTCACTAGTGCTGATaacTGCCAAA
AACTCCGTGACATGGCCGCCAAAGCCAAAGTCGAAGCTTCAAAAGTCAAA
GCTTACGTTTTAAAACAAGTCGCCgtgttgaaaacaaaaacatgcgAAGA
TTTCATTATGTCCGTCGATAAATGCACCAAATTGAGAGACTTGGCCGCCA
AAGTGAAAGtcaagggtgaggaattcaaagtCATGGTTTTGGCTGCTCTC
CAAGAAGCTCAACAGAAGGGTACTGATAAAGTGAAGGAGGTTTACAACAA
CATCAAAAACTACATTGTTTCCACAAGATGTGAAGATATGTTCAACCCAG
ACTTGTGCGCCGCCATGAGAAAATATGCTGCAAAGACCAAAGTTGCACTT
CCAAAGATTTTGGAAACCTCATTTGAAGTCTTGAAGAAAGGAGTCAGCGT
TGGAAAAGCtatggttgaaaaagttttcgaTATTGTCGACTATTTTTATG
ATTGCGAAGATGTCTTTGATAAGGGATCTTGTGATCGTCTCAGAAACTGG
GCTGCCACTTTGAAAATCAAAGCTGATGAATTCGAAGTTGCCGTCCGAAA
ATACGTCCGTATTGCTGTCGAAAAAGCGACATCTTTTTACAAAACTCTCA
AAGATTTCATCAAAGAGAAATTCTACTGTAGAATCTGGCCATCATCCAGC
AAATGTCAAATGTCTGACGCTGATGTCATTGCTATGATCGCTGAAGACGA
TATGGGAACAAAAGTTGAAGCATGGAAACAAAAGATCTTGGATATTCTCA
ACAAACGATTCCCTGGTTTGGACCAAAAAGTACGTGAACACATCAAGACC
ATcatcgaaaaatcaaaatctttttggCAATTGATGAGAAATTTTgccaa
agaaatcaaaaaccaAGGACAACAAGTCAGCCAAAAAATCCGTGAAGCCC
TCCGAAAATTAATGGTTGAAATCGCTACCATGTAAATGAAGCTTCTCTTG
TTATTCGCCTTCCTCTCCGTGGCTCTTGCCACCGACGGTGTGCCACCGCT
CCAATACCAACTCCACATCCCAGACAAATGTGAAGATGTTCTTGCCATCA
AAGTGTGTGACAGTCTCCGTAAAACTGCCACCGCATTGAAATTGAAATCC
GACGAAGTTAAGAATGCAGTTGTTGATGCTTACCAAAAAGGATTGGCAAC
TACCACTGAGATTGCCAATGCTGCTGAAGATTTCTTGGTCAACAAAGTCA
TGACAAAGAAATGTGAAGACTTCACTAGTGCTGATaacTGCCAAAAACTC
CGTGACATGGCCGCCAAAGCCAAAGTCGAAGCTTCAAAAGTCAAAGCTTA
CGTTTTAAAACAAGTCGCCgtgttgaaaacaaaaacatgcgAAGATTTCA
TTATGTCCGTCGATAAATGCACCAAATTGAGAGACTTGGCCGCCAAAGTG
AAAGtcaagggtgaggaattcaaagtCATGGTTTTGGCTGCTCTCCAAGA
AGCTCAACAGAAGGGTACTGATAAAGTGAAGGAGGTTTACAACAACATCA
AAAACTACATTGTTTCCACAAGATGTGAAGATATGTTCAACCCAGACTTG
TGCGCCGCCATGAGAAAATATGCTGCAAAGACCAAAGTTGCACTTCCAAA
GATTTTGGAAACCTCATTTGAAGTCTTGAAGAAAGGAGTCAGCGTTGGAA
AAGCtatggttgaaaaagttttcgaTATTGTCGACTATTTTTATGATTGC
GAAGATGTCTTTGATAAGGGATCTTGTGATCGTCTCAGAAACTGGGCTGC
CACTTTGAAAATCAAAGCTGATGAATTCGAAGTTGCCGTCCGAAAATACG
TCCGTATTGCTGTCGAAAAAGCGACATCTTTTTACAAAACTCTCAAAGAT
TTCATCAAAGAGAAATTCTACTGTAGAATCTGGCCATCATCCAGCAAATG
TCAAATGTCTGACGCTGATGTCATTGCTATGATCGCTGAAGACGATATGG
GAACAAAAGTTGAAGCATGGAAACAAAAGATCTTGGATATTCTCAACAAA
CGATTCCCTGGTTTGGACCAAAAAGTACGTGAACACATCAAGACCATcat
cgaaaaatcaaaatctttttggCAATTGATGAGAAATTTTgccaaagaaa
tcaaaaaccaAGGACAACAAGTCAGCCAAAAAATCCGTGAAGCCCTCCGA
AAATTAATGGTTGAAATCGCTACCATGTAAATGAAGCTTCTCTTGTTATT
CGCCTTCCTCTCCGTGGCTCTTGCCACCGACGGTGTGCCACCGCTCCAAT
ACCAACTCCACATCCCAGACAAATGTGAAGATGTTCTTGCCATCAAAGTG
TGTGACAGTCTCCGTAAAACTGCCACCGCATTGAAATTGAAATCCGACGA
AGTTAAGAATGCAGTTGTTGATGCTTACCAAAAAGGATTGGCAACTACCA
CTGAGATTGCCAATGCTGCTGAAGATTTCTTGGTCAACAAAGTCATGACA
AAGAAATGTGAAGACTTCACTAGTGCTGATaacTGCCAAAAACTCCGTGA
CATGGCCGCCAAAGCCAAAGTCGAAGCTTCAAAAGTCAAAGCTTACGTTT
TAAAACAAGTCGCCgtgttgaaaacaaaaacatgcgAAGATTTCATTATG
TCCGTCGATAAATGCACCAAATTGAGAGACTTGGCCGCCAAAGTGAAAGt
caagggtgaggaattcaaagtCATGGTTTTGGCTGCTCTCCAAGAAGCTC
AACAGAAGGGTACTGATAAAGTGAAGGAGGTTTACAACAACATCAAAAAC
TACATTGTTTCCACAAGATGTGAAGATATGTTCAACCCAGACTTGTGCGC
CGCCATGAGAAAATATGCTGCAAAGACCAAAGTTGCACTTCCAAAGATTT
TGGAAACCTCATTTGAAGTCTTGAAGAAAGGAGTCAGCGTTGGAAAAGCt
atggttgaaaaagttttcgaTATTGTCGACTATTTTTATGATTGCGAAGA
TGTCTTTGATAAGGGATCTTGTGATCGTCTCAGAAACTGGGCTGCCACTT
TGAAAATCAAAGCTGATGAATTCGAAGTTGCCGTCCGAAAATACGTCCGT
ATTGCTGTCGAAAAAGCGACATCTTTTTACAAAACTCTCAAAGATTTCAT
CAAAGAGAAATTCTACTGTAGAATCTGGCCATCATCCAGCAAATGTCAAA
TGTCTGACGCTGATGTCATTGCTATGATCGCTGAAGACGATATGGGAACA
AAAGTTGAAGCATGGAAACAAAAGATCTTGGATATTCTCAACAAACGATT
CCCTGGTTTGGACCAAAAAGTACGTGAACACATCAAGACCATcatcgaaa
aatcaaaatctttttggCAATTGATGAGAAATTTTgccaaagaaatcaaa
aaccaAGGACAACAAGTCAGCCAAAAAATCCGTGAAGCCCTCCGAAAATT
AATGGTTGAAATCGCTACCATGTAAATGAAGCTTCTCTTGTTATTCGCCT
TCCTCTCCGTGGCTCTTGCCACCGACGGTGTGCCACCGCTCCAATACCAA
CTCCACATCCCAGACAAATGTGAAGATGTTCTTGCCATCAAAGTGTGTGA
CAGTCTCCGTAAAACTGCCACCGCATTGAAATTGAAATCCGACGAAGTTA
AGAATGCAGTTGTTGATGCTTACCAAAAAGGATTGGCAACTACCACTGAG
ATTGCCAATGCTGCTGAAGATTTCTTGGTCAACAAAGTCATGACAAAGAA
ATGTGAAGACTTCACTAGTGCTGATaacTGCCAAAAACTCCGTGACATGG
CCGCCAAAGCCAAAGTCGAAGCTTCAAAAGTCAAAGCTTACGTTTTAAAA
CAAGTCGCCgtgttgaaaacaaaaacatgcgAAGATTTCATTATGTCCGT
CGATAAATGCACCAAATTGAGAGACTTGGCCGCCAAAGTGAAAGtcaagg
gtgaggaattcaaagtCATGGTTTTGGCTGCTCTCCAAGAAGCTCAACAG
AAGGGTACTGATAAAGTGAAGGAGGTTTACAACAACATCAAAAACTACAT
TGTTTCCACAAGATGTGAAGATATGTTCAACCCAGACTTGTGCGCCGCCA
TGAGAAAATATGCTGCAAAGACCAAAGTTGCACTTCCAAAGATTTTGGAA
ACCTCATTTGAAGTCTTGAAGAAAGGAGTCAGCGTTGGAAAAGCtatggt
tgaaaaagttttcgaTATTGTCGACTATTTTTATGATTGCGAAGATGTCT
TTGATAAGGGATCTTGTGATCGTCTCAGAAACTGGGCTGCCACTTTGAAA
ATCAAAGCTGATGAATTCGAAGTTGCCGTCCGAAAATACGTCCGTATTGC
TGTCGAAAAAGCGACATCTTTTTACAAAACTCTCAAAGATTTCATCAAAG
AGAAATTCTACTGTAGAATCTGGCCATCATCCAGCAAATGTCAAATGTCT
GACGCTGATGTCATTGCTATGATCGCTGAAGACGATATGGGAACAAAAGT
TGAAGCATGGAAACAAAAGATCTTGGATATTCTCAACAAACGATTCCCTG
GTTTGGACCAAAAAGTACGTGAACACATCAAGACCATcatcgaaaaatca
aaatctttttggCAATTGATGAGAAATTTTgccaaagaaatcaaaaacca
AGGACAACAAGTCAGCCAAAAAATCCGTGAAGCCCTCCGAAAATTAATGG
TTGAAATCGCTACCATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013243XLOC_013243Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023560-proteinTCONS_00023560-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023560-exon-sc0000456-1491911889:180213..180417TCONS_00023560-exon-sc0000456-1491911889:180213..180417Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:180213..180417TCONS_00023560-exon-sc0000456-1510915933:180213..180417Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:180213..180417TCONS_00023560-exon-sc0000456-1575043694:180213..180417Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1491911889:180592..180892TCONS_00023560-exon-sc0000456-1491911889:180592..180892Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:180592..180892TCONS_00023560-exon-sc0000456-1510915933:180592..180892Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:180592..180892TCONS_00023560-exon-sc0000456-1575043694:180592..180892Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1491911889:181132..181260TCONS_00023560-exon-sc0000456-1491911889:181132..181260Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:181132..181260TCONS_00023560-exon-sc0000456-1510915933:181132..181260Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:181132..181260TCONS_00023560-exon-sc0000456-1575043694:181132..181260Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1491911889:181377..181559TCONS_00023560-exon-sc0000456-1491911889:181377..181559Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:181377..181559TCONS_00023560-exon-sc0000456-1510915933:181377..181559Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:181377..181559TCONS_00023560-exon-sc0000456-1575043694:181377..181559Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1491911889:182375..182548TCONS_00023560-exon-sc0000456-1491911889:182375..182548Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:182375..182548TCONS_00023560-exon-sc0000456-1510915933:182375..182548Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:182375..182548TCONS_00023560-exon-sc0000456-1575043694:182375..182548Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1491911889:182801..183068TCONS_00023560-exon-sc0000456-1491911889:182801..183068Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:182801..183068TCONS_00023560-exon-sc0000456-1510915933:182801..183068Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:182801..183068TCONS_00023560-exon-sc0000456-1575043694:182801..183068Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1491911889:183693..184026TCONS_00023560-exon-sc0000456-1491911889:183693..184026Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1510915933:183693..184026TCONS_00023560-exon-sc0000456-1510915933:183693..184026Clytia hemisphaericaexon
TCONS_00023560-exon-sc0000456-1575043694:183693..184026TCONS_00023560-exon-sc0000456-1575043694:183693..184026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:180213..184026 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43448	1.24897	0.870102	0.595881	0.0690884	0.136486	0.065866	0.061663	0.0863434	0.0534751	0.0259521	0.324138	525.941	494.127	662.778	1804.74	126.108	138.224	1356.82	1220.72	503.879	576.957	735.612	864.638	1032.19	1178.57	3.82854	4.08592	141.19	200.308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023560 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top