TCONS_00023426 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023426
Unique NameTCONS_00023426
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length471

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023426 ID=TCONS_00023426|Name=TCONS_00023426|organism=Clytia hemisphaerica|type=transcript|length=471bp
NNTATGACGGCCAGCTGGGGTTGTGGAGAGCGCTATGGGCAATCTTGGCG
ATTGTTAGATCAACCATCTCAGAAACTGGTAACCATTCGAGATCGATTAC
GTCACTGGTTCTGGCATAACTTTTGAGCACGAAGCCAGCGGCGGCGTTCT
GGACTTTCTGAAGACGCTCAACCTAGGCTTTTGTAGCATCGGATAGTAAA
GCGATGCCATATGTCAGTTTACTGAGAACCAGTGACTCCATAAGCATCTT
GCGCTGCTGCCATGATGCGATGTTCTTGAATCGTTTTAAGCTGCGTAACG
TGGCAAAACAAGATCTCATGGTATGTTTGACATGTTCAGTCCAGTCTAGA
TGCTTATTAAATCTAACAccgagaattttgaaatttttgacctGTTCAAT
ATCCTGCCCAGCGCTTTTGATAACCGTGACGAGTTCCGCGAGGGAATGGC
GTTGTGCAAGTTGTCTGGTCG
Run BLAST on NCBI

transcript from alignment at sc0000453:74999..75469

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023426 ID=TCONS_00023426|Name=TCONS_00023426|organism=Clytia hemisphaerica|type=transcript|length=471bp|location=Sequence derived from alignment at sc0000453:74999..75469 (Clytia hemisphaerica)
CGACCAGACAACTTGCACAACGCCATTCCCTCGCGGAACTCGTCACGGTT
ATCAAAAGCGCTGGGCAGGATATTGAACaggtcaaaaatttcaaaattct
cggTGTTAGATTTAATAAGCATCTAGACTGGACTGAACATGTCAAACATA
CCATGAGATCTTGTTTTGCCACGTTACGCAGCTTAAAACGATTCAAGAAC
ATCGCATCATGGCAGCAGCGCAAGATGCTTATGGAGTCACTGGTTCTCAG
TAAACTGACATATGGCATCGCTTTACTATCCGATGCTACAAAAGCCTAGG
TTGAGCGTCTTCAGAAAGTCCAGAACGCCGCCGCTGGCTTCGTGCTCAAA
AGTTATGCCAGAACCAGTGACGTAATCGATCTCGAATGGTTACCAGTTTC
TGAGATGGTTGATCTAACAATCGCCAAGATTGCCCATAGCGCTCTCCACA
ACCCCAGCTGGCCGTCATANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013177XLOC_013177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023426-exon-sc0000453-1491911889:74999..75469TCONS_00023426-exon-sc0000453-1491911889:74999..75469Clytia hemisphaericaexon
TCONS_00023426-exon-sc0000453-1510915933:74999..75469TCONS_00023426-exon-sc0000453-1510915933:74999..75469Clytia hemisphaericaexon
TCONS_00023426-exon-sc0000453-1575043694:74999..75469TCONS_00023426-exon-sc0000453-1575043694:74999..75469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000453supercontigsc0000453:74999..75469 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.855636	0	0	0.470749	5.30991	1.97404	1.50863	2.07475	0.219519	0.906313	0.822683	0.231282	3.50708	1.89993	2.07171	0.96911	1.19609	0.874184	4.63795	4.2312	1.43095	2.12846	0.358623	0	1.94598	1.81134	7.5127	4.70393	1.27727	0.88547
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023426 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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