TCONS_00023341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023341
Unique NameTCONS_00023341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023341 ID=TCONS_00023341|Name=TCONS_00023341|organism=Clytia hemisphaerica|type=transcript|length=988bp
AAGGAGTTTGGGAGTATGATCCCGTGAAGCAATACGTTACCCCTAAAGAA
CACAAGAAGCTGTACACGACCTGTCCTTACCGAGGTTGCCCTACTGGGTT
CAATGGAGTAAATATTGCTACCTACCTCACGAGCAAGCACCACTTGTGGG
ATAAGGAAATGGCTCAGATGGAGCAAAAATATCGCCACAGGATGTACAAT
TGGTGCACGCGATTAAAGGCCTATGGTAGCTCAAGACCGAAGTTGTGCCG
GAGCTGCAAAACGTTTTACCACCGTCTAGATACTCATTTACGAAGCAAAA
TACATAAAATCAAGGAAGCAGCCCAGATTAACATTGAAACCCAAGCCTGC
CAACGCACGATGAAGGATTTCCTCAACTTTCGTGATTCATTTCAAAGTAT
GAAACACAACACGTTACCACCAACTCTATCTTCAATCGAAACAAGTACGT
CTAGGCGTAGATCAATTTCAACGGCAAACGAACATATCAAGtccaaagaa
aagaaagacTGGGTGCAGATTAATATGGATAATGAATCAAGAGATACTGA
AGAAAAGTCGTAAAATCACATACACATCATTGAAGTTTTCATCATGTCAG
AAACGAGATGACTCACTAGATTAACTGCAAAACATCATCTTCAAATAAAT
TGGGAATTTATCATAGCTTGGATCACCAGATTTATATCTGGTTACATTTC
GAGAGATACTTTTCCCATCATCGAGTAAATAGGAGGGTGATGAAAATGCA
ATTGAAGGATGATTGTAACGCAGGTGTAAGGTAAATTTacattttgatgt
tatgtgaTTACTCATTATCTTTGTTTTTGTCTTGCATGTCTGTTCGAACG
TTCAATATTCATCATTTTCAACCTTTGCTCAACCCTATTTACTTTTTGTA
CTGGGGCTTAACGTTTGACCAGCTGAACTGAAATCTTCGAGATTATAACC
AGGTTGTGATCTGacttttgtcttttattttGTACAGC
Run BLAST on NCBI

transcript from alignment at sc0000452:45482..48096+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023341 ID=TCONS_00023341|Name=TCONS_00023341|organism=Clytia hemisphaerica|type=transcript|length=2615bp|location=Sequence derived from alignment at sc0000452:45482..48096+ (Clytia hemisphaerica)
AAGGAGTTTGGGAGTATGATCCCGTGAAGGTAAGGGATAAGGTCTTGCTT
TCACCCTTTTCgttttcactttcatgtcatCCTTGCATAAtctaatttct
aattttatcTTGTCACTTCCGTTCTAGTTTtcagtttgtttgtttattta
tttttttcatttatttatttgtcaTCTTTCGCAGTGAACTGGATGAGACC
GTGACTGAGTTGCTCAAAAAGAATAGTTCGTATTCCATGGCAGGTcactt
taaatttaaaatcttgttattattgttattacagCAATACGTTACCCCTA
AAGAACACAAGAAGCTGTACACGACCTGTCCTTACCGAGGTTGCCCTACT
GGGTTCAATGGAGTAAATATTGCTACCTACCTCACGAGCAAGCACCACTT
GTGGGATAAGGAAATGGCTCAGATGGAGCAAAAATATCGCCACAGGTact
tcattttaatttaatcgaaaacAGACACACGTGGTATCGAGATAACTGTA
ACTTCTATTACTAATGTACTCATAACATTGGCGCCTCAGAAGTGAGCTCA
GCgctaatatttttatttatacaaagaAAGAATGTAATCTCGATCTCCTT
TGTAGGATAAGTATTTCATATTACTGTATAAgatcattttttttcaagat
ataTTTCATTCTTTACACAGGATGTACAATTGGTGCACGCGATTAAAGGC
CTATGGTAGCTCAAGACCGAAGTTGTGCCGGAGCTGCAAAACGTTTTACC
ACCGTCTAGATACTCATTTACGAAGCAAAATACATAAAATCAAGGAAGCA
GCCCAGATTAACATTGAAACCCAAGCCTGCCAACGCACGATGAAGGATTT
CCTCAACTTTCGTGATTCATTTCAAAGTATGAAACACAACACGTAAGTGT
atgaattttcttcattttctgttTCGCAAAACTTGTAAATAAACTTTTAA
GAGTGCAGATGGGCTTGGTTTAGCTATTAttactttttttcctttttcca
atGGAAAGTATTGAGTTAGTAACTGACCTAATATATTCATTGATCTTATT
GGAAAGAAAcacattttgtatttttaatctTTATATAGGTTACCACCAAC
TCTATCTTCAATCGAAACAAGTACGTCTAGGCGTAGATCAATTTCAACGG
CAAACGAACATATCAAGtccaaagaaaagaaagacTGGGTATGTCATAAT
TTAAGGGTCACTGCTTTCTTCTTATACAGTTAATTGAAATCTTTATCGAC
GGTAACATCAAGTTCGCGGTCATATCATCAACAAAAAAGCACGTCTCCAT
CTCCAAGATGTGGTTCAGCCTCACCAGAGTAAATGAAAAATggaatggaa
aataaaaaacacaTTCAGAATAAGTGCATCTTCTCaagtttaaaattcaa
attatcaCTTAAAGTTTCTTCTGGaagatttgaattttaaagTTGAAAAG
ATGCACTTATTCGGAATTTGCTTTTTGTTTtatatcttgaatttttttgg
ctGCAAAAAAGGATTTTGGTTGTATCTGTTAAAAGTCAACTTTGTTTCTA
TACTTCTAGACTTTTTTCTGTATTGGTTCTTGTtttatatcatattttca
actCTGTaccaaaatattgcaaaaaaaaatttggacttTGACCGGTTCca
ccattatgaaattttggatttttaggAAATGTTTTTTCCCGACACTAAAT
ACATACCTATTTGTGAGTAATTACAGAAAACAGAAGTCAAAAAGCTTATT
TTTACAAAGTTCTATGCCTTTTTGAAAATACCGCCTATTTTCCTCGATTT
CGATCaatttttcggcattttcgaaTTTGTGTGTGACGTCATCACCCGAA
TAAagggaaatttggaaaaaaaattatgcaaacttcTTTCCCTTTATACA
AAGTCTCtatgtaccaaatttcatgcaaaaaatccaAACCAGTCTTGAGT
TATGGGGCAACTCCAGACCCCTAATACCCCGGGGCGGATAGGGTTAAAGA
ACTTGATGGTTCCTACTACTTCTTTTTACATGATGATTTTATTATCAACT
TGCGAAgtaaaatttgagcaaaattttctttttattaaaaacatttttga
tgtaaagacaaacaaattatttttcatactCTCTGTTAGGTGCAGATTAA
TATGGATAATGAATCAAGAGATACTGAAGAAAAGTCGTAAAATCACATAC
ACATCATTGAAGTTTTCATCATGTCAGAAACGAGATGACTCACTAGATTA
ACTGCAAAACATCATCTTCAAATAAATTGGGAATTTATCATAGCTTGGAT
CACCAGATTTATATCTGGTTACATTTCGAGAGATACTTTTCCCATCATCG
AGTAAATAGGAGGGTGATGAAAATGCAATTGAAGGATGATTGTAACGCAG
GTGTAAGGTAAATTTacattttgatgttatgtgaTTACTCATTATCTTTG
TTTTTGTCTTGCATGTCTGTTCGAACGTTCAATATTCATCATTTTCAACC
TTTGCTCAACCCTATTTACTTTTTGTACTGGGGCTTAACGTTTGACCAGC
TGAACTGAAATCTTCGAGATTATAACCAGGTTGTGATCTGacttttgtct
tttattttGTACAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013127XLOC_013127Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023341-exon-sc0000452-1491911889:45482..45510TCONS_00023341-exon-sc0000452-1491911889:45482..45510Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1510915933:45482..45510TCONS_00023341-exon-sc0000452-1510915933:45482..45510Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1575043694:45482..45510TCONS_00023341-exon-sc0000452-1575043694:45482..45510Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1491911889:45766..45926TCONS_00023341-exon-sc0000452-1491911889:45766..45926Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1510915933:45766..45926TCONS_00023341-exon-sc0000452-1510915933:45766..45926Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1575043694:45766..45926TCONS_00023341-exon-sc0000452-1575043694:45766..45926Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1491911889:46152..46373TCONS_00023341-exon-sc0000452-1491911889:46152..46373Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1510915933:46152..46373TCONS_00023341-exon-sc0000452-1510915933:46152..46373Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1575043694:46152..46373TCONS_00023341-exon-sc0000452-1575043694:46152..46373Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1491911889:46570..46669TCONS_00023341-exon-sc0000452-1491911889:46570..46669Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1510915933:46570..46669TCONS_00023341-exon-sc0000452-1510915933:46570..46669Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1575043694:46570..46669TCONS_00023341-exon-sc0000452-1575043694:46570..46669Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1491911889:47621..48096TCONS_00023341-exon-sc0000452-1491911889:47621..48096Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1510915933:47621..48096TCONS_00023341-exon-sc0000452-1510915933:47621..48096Clytia hemisphaericaexon
TCONS_00023341-exon-sc0000452-1575043694:47621..48096TCONS_00023341-exon-sc0000452-1575043694:47621..48096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:45482..48096 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0206664	0.0766934	0.282118	0.100898	0	0	0	0	0	0	0	0	0	0.157277	0	0	0	0	0.0968257	0	0	0	0.0522183	0	0.34228	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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