TCONS_00023184 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023184
Unique NameTCONS_00023184
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023184 ID=TCONS_00023184|Name=TCONS_00023184|organism=Clytia hemisphaerica|type=transcript|length=343bp
TATCACATACAAATTTCCCTAAGGACATAAAAAAGCCTCGTAATGAAGAT
AATAAACAATGCTTCCAAGTTGATCATAATGATGATGTAATTAAGAATCT
TTTACAGTATTTTTCAATCTTCAGTATGAGTCGGCTAAGGTTTAAACCAA
AAATTTACAGCCTTAAGAAAAGGGTCGCCCTAAACTGCGGTAGCAAATTT
ACtaactttatttatttcaaaCTTCACAGGTCGATAGAGGATGGAGATAG
CTATGCTGCCAACTTCTTGATCAAACAAGGAGCAGACGTGAAGGCAATCA
CTAGCGACAAGAACGAAACAACATTACACTTAGCTGCTTCCTT
Run BLAST on NCBI

transcript from alignment at sc0000446:39289..39631+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023184 ID=TCONS_00023184|Name=TCONS_00023184|organism=Clytia hemisphaerica|type=transcript|length=343bp|location=Sequence derived from alignment at sc0000446:39289..39631+ (Clytia hemisphaerica)
TATCACATACAAATTTCCCTAAGGACATAAAAAAGCCTCGTAATGAAGAT
AATAAACAATGCTTCCAAGTTGATCATAATGATGATGTAATTAAGAATCT
TTTACAGTATTTTTCAATCTTCAGTATGAGTCGGCTAAGGTTTAAACCAA
AAATTTACAGCCTTAAGAAAAGGGTCGCCCTAAACTGCGGTAGCAAATTT
ACtaactttatttatttcaaaCTTCACAGGTCGATAGAGGATGGAGATAG
CTATGCTGCCAACTTCTTGATCAAACAAGGAGCAGACGTGAAGGCAATCA
CTAGCGACAAGAACGAAACAACATTACACTTAGCTGCTTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013036XLOC_013036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023184-exon-sc0000446-1491911889:39289..39631TCONS_00023184-exon-sc0000446-1491911889:39289..39631Clytia hemisphaericaexon
TCONS_00023184-exon-sc0000446-1510915933:39289..39631TCONS_00023184-exon-sc0000446-1510915933:39289..39631Clytia hemisphaericaexon
TCONS_00023184-exon-sc0000446-1575043694:39289..39631TCONS_00023184-exon-sc0000446-1575043694:39289..39631Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:39289..39631 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.49819	3.38956	1.04284	3.34428	1.01519	1.74313	7.20924	2.2503	0.57555	0	1.16048	0.594351	0	1.28146	1.37483	0.534869	0.600902	0	0	0	0.798272	0	0.789399	0.627704	1.66313	1.92988	0	0.580912	0.590034	1.13084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023184 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top