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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023170 ID=TCONS_00023170|Name=TCONS_00023170|organism=Clytia hemisphaerica|type=transcript|length=894bp
CTACAACTTCCTCCACGTAATCTTTGTCACCGGCCCGCTGTTCCTCTTTG
TTCTCATCTTTATTTTCACCTAAATGATGGACAATGATGTTACATCTAGT
TAAGATCTTCCAGCGATCGtcttctctttcttctttttcatttttgataa
atttcttgaTGATAACCTCCTGTTTCTTCATCTCTTCCTTTGTGATATCT
GCATATGTTGCCCGTTTTGGTTCTTTAGCGACGTCTTCTTTGTTCATAGC
TATAAGTTCCTCCATTTTCTTCTCTAGATTATGCAATCTAGTGTTGAAAA
CAGATTCAAATATTTGCTGACCTCCATCTCGACATTCTGCTTCCGTTATT
GTTTGCGTTATTTGGTTACTTCTGACTCTTTGcttacttgttttgatttt
ttccaaaagtatTGGTGTGACTGTAACacattttttacattcgaaGCGTC
GGCTTTTGTATTGCAGACAAAGCTGAATTTGGTATGCGGGAAGCTCCGAA
CAAGCATAATGAACGANNNNNNNNNNNNNNNNNTTTTCCAAAAGTATTGG
CGTGACTGTAACacattttttacattcgaaGCGTCGGCTTTTGTATTGCA
GACAAAGCTGAATTTGGTATGCGGGAAGCTCCAAACAAGCATAATGAACG
AATCTCTGGCATTTCCTACATTGTAATATGTCATTATCCTTTATTATTTC
ATTCGTGAAGCATTTATTGGCGGTACAGGATccatatttttcagcatttt
cagtgggtttttcatcgattgttgccattctttttcattcattcgCAAGA
GCGTGGCCGTACATattgtatttgacgtcaaaaattaaatgtctcaaaaa
tcgatattttctgGTGAAAAGAATTGATAATGTGGTGAGTTGAC Run BLAST on NCBI protein sequence of TCONS_00023170-protein >TCONS_00023170-protein ID=TCONS_00023170-protein|Name=TCONS_00023170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MATIDEKPTENAEKYGSCTANKCFTNEIIKDNDILQCRKCQRFVHYACLE
LPAYQIQLCLQYKSRRFECKKCVTVTPILLEXXXXXXXVHYACSELPAYQ
IQLCLQYKSRRFECKKCVTVTPILLEKIKTSKQRVRSNQITQTITEAECR
DGGQQIFESVFNTRLHNLEKKMEELIAMNKEDVAKEPKRATYADITKEEM
KKQEVIIKKFIKNEKEEREDDRWKILTRCNIIVHHLGENKDENKEEQRAG
DKDYVEEVV Run BLAST on NCBI transcript from alignment at sc0000444:15560..16453 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023170 ID=TCONS_00023170|Name=TCONS_00023170|organism=Clytia hemisphaerica|type=transcript|length=894bp|location=Sequence derived from alignment at sc0000444:15560..16453 (Clytia hemisphaerica)
GTCAACTCACCACATTATCAATTCTTTTCACcagaaaatatcgatttttg
agacatttaatttttgacgtcaaatacaatATGTACGGCCACGCTCTTGc
gaatgaatgaaaaagaatggcaacaatcgatgaaaaacccactgaaaatg
ctgaaaaatatggATCCTGTACCGCCAATAAATGCTTCACGAATGAAATA
ATAAAGGATAATGACATATTACAATGTAGGAAATGCCAGAGATTCGTTCA
TTATGCTTGTTTGGAGCTTCCCGCATACCAAATTCAGCTTTGTCTGCAAT
ACAAAAGCCGACGCttcgaatgtaaaaaatgtGTTACAGTCACGCCAATA
CTTTTGGAAAANNNNNNNNNNNNNNNNNTCGTTCATTATGCTTGTTCGGA
GCTTCCCGCATACCAAATTCAGCTTTGTCTGCAATACAAAAGCCGACGCt
tcgaatgtaaaaaatgtGTTACAGTCACACCAatacttttggaaaaaatc
aaaacaagtaagCAAAGAGTCAGAAGTAACCAAATAACGCAAACAATAAC
GGAAGCAGAATGTCGAGATGGAGGTCAGCAAATATTTGAATCTGTTTTCA
ACACTAGATTGCATAATCTAGAGAAGAAAATGGAGGAACTTATAGCTATG
AACAAAGAAGACGTCGCTAAAGAACCAAAACGGGCAACATATGCAGATAT
CACAAAGGAAGAGATGAAGAAACAGGAGGTTATCAtcaagaaatttatca
aaaatgaaaaagaagaaagagaagaCGATCGCTGGAAGATCTTAACTAGA
TGTAACATCATTGTCCATCATTTAGGTGAAAATAAAGATGAGAACAAAGA
GGAACAGCGGGCCGGTGACAAAGATTACGTGGAGGAAGTTGTAG Coding sequence (CDS) from alignment at sc0000444:15560..16453 >TCONS_00023170 ID=TCONS_00023170|Name=TCONS_00023170|organism=Clytia hemisphaerica|type=CDS|length=777bp|location=Sequence derived from alignment at sc0000444:15560..16453 (Clytia hemisphaerica)
atggcaacaatcgatgaaaaacccactgaaaatgctgaaaaatatggATC
CTGTACCGCCAATAAATGCTTCACGAATGAAATAATAAAGGATAATGACA
TATTACAATGTAGGAAATGCCAGAGATTCGTTCATTATGCTTGTTTGGAG
CTTCCCGCATACCAAATTCAGCTTTGTCTGCAATACAAAAGCCGACGCtt
cgaatgtaaaaaatgtGTTACAGTCACGCCAATACTTTTGGAAAANNNNN
NNNNNNNNNNNNTCGTTCATTATGCTTGTTCGGAGCTTCCCGCATACCAA
ATTCAGCTTTGTCTGCAATACAAAAGCCGACGCttcgaatgtaaaaaatg
tGTTACAGTCACACCAatacttttggaaaaaatcaaaacaagtaagCAAA
GAGTCAGAAGTAACCAAATAACGCAAACAATAACGGAAGCAGAATGTCGA
GATGGAGGTCAGCAAATATTTGAATCTGTTTTCAACACTAGATTGCATAA
TCTAGAGAAGAAAATGGAGGAACTTATAGCTATGAACAAAGAAGACGTCG
CTAAAGAACCAAAACGGGCAACATATGCAGATATCACAAAGGAAGAGATG
AAGAAACAGGAGGTTATCAtcaagaaatttatcaaaaatgaaaaagaaga
aagagaagaCGATCGCTGGAAGATCTTAACTAGATGTAACATCATTGTCC
ATCATTTAGGTGAAAATAAAGATGAGAACAAAGAGGAACAGCGGGCCGGT
GACAAAGATTACGTGGAGGAAGTTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023170-exon-sc0000444-1491911889:15560..16453 | TCONS_00023170-exon-sc0000444-1491911889:15560..16453 | Clytia hemisphaerica | exon |
| TCONS_00023170-exon-sc0000444-1510915933:15560..16453 | TCONS_00023170-exon-sc0000444-1510915933:15560..16453 | Clytia hemisphaerica | exon |
| TCONS_00023170-exon-sc0000444-1575043694:15560..16453 | TCONS_00023170-exon-sc0000444-1575043694:15560..16453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000444 | supercontig | sc0000444:15560..16453 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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