TCONS_00023115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023115
Unique NameTCONS_00023115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2860

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023115 ID=TCONS_00023115|Name=TCONS_00023115|organism=Clytia hemisphaerica|type=transcript|length=2860bp
TTCCAGTCAATCATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTAC
GCTCATAATTGTGGAAGGCCTACCAATATACACGCATTCGAAGTTTCGGA
CGAGAATGGAATCACAGATGACGATACATGTATCCCAATCAGCACTGGTC
CTTCAGTTGCCAACACTGTCAAAGAATTCAATCAAAGAGCAATGCAGTAT
TACAAAGACCATATCGACGTCAAAACCTTCCCACCCTCGTATTACgtaca
aaatgaaaacattaaagAAGTTATCGCGAGTCTTGAAAAACATTCATCAC
TTCTTGGAGGAAAAATTCTCGTCGGATATAACCCCATAAACCATCTCAGA
ATACTTGGACTCGATTATCAAAAGATTGAGAGTGTTCTGCAATTTTCTGA
AAAGCCTGATCACTATGACAACACAATCGTTTGTATTTATCCCAATCATA
GCTTGATGTTTGTTTACGTGGTTGGTGAAAACGAAAAACATCTTGACAAG
GATTTGGCGAAAGTCAATGCTGTCTTGAAAACATGGTGTTATGTTCACAG
GCAGATTCTCCAAAATGAACAGTTTACTATTGTTGGAGTTCTCGTCTTAC
CGGCTTCAAGCGActtgaacaaaatgtttaagCAACATCCTTGCTTAAAT
CTAAACACAGAGAGTCAGGATTTTGTCATTTCTTACGATAAAAGTTTTGG
ACAGTGGTTAACCAACTTCTTANTGAAGCAGCATCCTTGCTTGAATCTAA
ACACAAAGAGTCAGGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAA
TGGTTGACCAGCTTCTTAAAATTAATCCGGGATAATCGAAAGCTTTCATC
ACCCTCAACACCAGAAGTAATGGAAAATATTACAGGCAACATGATGGCGA
GCATGGCACAAACCAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACT
ATGAACGTTAAGACCNTCATCGCCAGAAATAATGGAAAACATTACAGGTA
ACATGATGGCAAGTATGGCACAAACCAAAATCTACCTTCCTCGTGTTTCA
GGAAATGACACTATTAACGTTAAGACGATCCTGTTAACTGAACCTCAAAT
CTCCTGCATCGAAAGCCAGTCAAATTGGAAGCTGATCCAAGCTTCCTATG
GCGCTGGAAAATCAATCACTTTACACGAAATTGCAAGGAAACTGCTGAAA
ATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCATTCAGTGC
ACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTTGTGAACAAGAAA
AATTGACACGAAAACGAGAAAATCTCATCTCTTTATCGCTTTCTGAAGCT
GTTGGTGAAAGAAAGAATGTCACCGATTTTTATAACTGTTCCTCATTACC
ATCCAAAAATATTGCTGACGTCATGCTTCTCTTAAAAACCAAATACAAAC
ATCGAACATTACATTTCCTCTTTGATGAAGTTCCACAAGAGATGTTCACG
AAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAATTTCGAGA
ATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAAAATAA
CCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAATAAGCTCA
GACATGGAACTTTTCAAACTACCAACCACAATAAGGATGAGCAGTTGCTT
ACATAAATTGAACGAAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCT
CCTTAAACTTAGAAGTTCGATCAAAAGgaAACGTTTTGCTAACAAAAGAC
GAATCTAACAAGGCCATAATCCACGAAACTCAACCAAATGGAGATGGCGA
AAATAGACCAGATGACTCTCAATCGACAACAGAAGTCGAATGTCAGCGAA
AAGAAGATCAAGAAGCAAGCGAATCATTTGACCCAACGAAGCTACGCGAC
CCCGAAAACGTTTTTAAGTCGCAGCCACAGACGAGTGGAAATGAAGAAGT
CGTGAAAGAACTGTCCACTACATATACCTATATGAAAGGGAAATGTGGGC
ATTCTTTCATGAGCTCCTTAAAACCACGAATCTTTCATTTCACCAAAGCT
TTCACACCTTTATTTGCTTGGTTCCTTCCGATGCTAGCAGCAATCCTCCA
GTTCTGTTTGAATGAGAGAAAGGAGGATGAAGTCGTGGTATTATGCGAAG
ATATCTGTCAAGTACAAATGGTTCAGTATGCCCTGGAAAGGATACACAAG
CGTCCAATTGCATATGCACCTTACCTTACCGGAGAATATCCTCAAGACAT
CCACAAGATGAaggaaaaattcatcaaaaatttagaCGAGATGGAGACAG
TTCTGATATCCGATTATCGGTCTGTTCGTGGATTGGAAATGGCCCATACA
ATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCACATTTTCTCATCGA
AGCAATCACACGAACCATAACAAATCTTGATGTCATTTCAACAAAACCTT
TTCCACAAAATCCTTCCACGAGTATCgaaagagcttttcaaaaatatgtc
gATGGGACTTTAGCTATTAAGACACACGTTGAATCAAGCAAAGACGCAGA
AGATCTTCTGAAAGTACGATTCCAATACAACAAAAAGGACGGCTCAcaac
aaacaaaaattatttcacagaAATTTACCGATTTCAGTTTCGACGTTTCA
CAATCTCTAgatgattttaacaaaaatgaagAGCTATGGCAAAACTATTT
CAGgAAGGCGTTTACTCTTTCAACTTCCATTTCATCTTTGGGAACCAACA
AATGGGATGGCAAAACCATGGAAAGTGTGACCTTGAATGATGGAACTACA
CTCAGTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000443:244782..251726+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023115 ID=TCONS_00023115|Name=TCONS_00023115|organism=Clytia hemisphaerica|type=transcript|length=6945bp|location=Sequence derived from alignment at sc0000443:244782..251726+ (Clytia hemisphaerica)
TTCCAGTCAATCATCATCATACAAGTAGGAAAGGAGAAACATTAGTCTAC GCTCATAATTGTGGAAGGCCTACCAATATACACGCATTCGAAGTTTCGGA CGAGAATGGAATCACAGATGACGATACATGTATCCCAATCAGCACTGGTC CTTCAGTTGCCAACACTGTCAAAGAATTCAATCAAAGAGCAATGCAGTAT TACAAAGACCATATCGACGTCAAAACCTTCCCACCCTCGTATTACgtaca aaatgaaaacattaaagAAGTTATCGCGAGTCTTGAAAAACATTCATCAC TTCTTGGAGGAAAAATTCTCGTCGGATATAACCCCATAAACCATCTCAGA ATACTTGGACTCGATTATCAAAAGATTGAGAGTGTTCTGCAATTTTCTGA AAAGCCTGATCACTATGACAACACAATCGTTTGTATTTATCCCAATCATA GCTTGATGTTTGTTTACGTGGTTGGTGAAAACGAAAAACATCTTGACAAG GATTTGGCGAAAGTCAATGCTGTCTTGAAAACATGGTGTTATGTTCACAG GCAGATTCTCCAAAATGAACAGTTTACTATTGTTGGAGTTCTCGTCTTAC CGGCTTCAAGCGActtgaacaaaatgtttaagCAACATCCTTGCTTAAAT CTAAACACAGAGAGTCAGGATTTTGTCATTTCTTACGATAAAAGTTTTGG ACAGTGGTTAACCAACTTCTTANTGAAGCAGCATCCTTGCTTGAATCTAA ACACAAAGAGTCAGGACTTTGTCATTTCTTTCGATGAAAACTTTGGACAA TGGTTGACCAGCTTCTTAAAATTAATCCGGGATAATCGAAAGCTTTCATC ACCCTCAACACCAGAAGTAATGGAAAATATTACAGGCAACATGATGGCGA GCATGGCACAAACCAAAATCTACCTTCCTCGTGTTTCAGGAAATGACACT ATGAACGTTAAGACCNTCATCGCCAGAAATAATGGAAAACATTACAGGTA ACATGATGGCAAGTATGGCACAAACCAAAATCTACCTTCCTCGTGTTTCA GGAAATGACACTATTAACGTTAAGACGATCCTGTTAACTGAACCTCAAAT CTCCTGCATCGAAAGCCAGTCAAATTGGAAGCTGATCCAAGCTTCCTATG GCGCTGGAAAATCAATCACTTTACACGAAATTGCAAGGAAACTGCTGAAA ATGAGCAACCAAGACTTGATTATAAACGTTACTTTCGACCCATTCAGTGC ACTAGATAAGAAAGTCGACCATTCATTTAACGAGCTTTGTGAACAAGAAA AATTGACACGAAAACGAGAAAATCTCATCTCTTTATCGCTTTCTGAAGCT GTTGGTGAAAGAAAGAATGTCACCGATTTTTATAACTGTTCCTCATTACC ATCCAAAAATATTGCTGACGTCATGCTTCTCTTAAAAACCAAATACAAAC ATCGAACATTACATTTCCTCTTTGATGAAGTTCCACAAGAGATGTTCACG AAGACCTACTCAGAAACACTACGTGGCCGTTTGGAGAGTGAATTTCGAGA ATCAGTTGTCGTGATTGCCCTCCAAAGTGTACAGAAATCTCGAAAAATAA CCGAGGAAGGCAAGGTCACCAATTCACAGGAGATTGATTTAATAAGCTCA GACATGGAACTTTTCAAACTACCAACCACAATAAGGATGAGCAGTTGCTT ACATAAATTGAACGAAGTTTTGGAAGGTGAAATCGAAAGTTCGCCCTGCT CCTTAAACTTAGAAGTTCGATCAAAAGGTATAACATACCATTTACGTAAC ATTCTTTTATAATCGTGTTCAATTGCAACAGTGTGCAAGTAAAATATGCT CATTTCCATTTATTAccgaaatattttcttacattttgatttttcaggaA ACGTTTTGCTAACAAAAGACGAATCTAACAAGGCCATAATCCACGAAACT CAACCAAATGGAGATGGCGAAAATAGACCAGATGACTCTCAATCGACAAC AGAAGTCGAATGTCAGGTTACCGAGATATTTTTGTTAACGAGCGCACTGT TTACAATTAGCTTACCATTGAAATTGAATAATGAAGCTATTATCTCTTTG TCAGAACCGATCTTTTTAGAAATTCTTCagactgattttttttgattttc ttttctcaGACTAGGACACTTTTCGTGTTGGATATTACAGCTTATTTTTT AAAGTCCATTCAAATTATCTTCACCGGATGTAATTTGCTTCTCTATAACT TGTGAAAAAAAACGTGCTCTCCTTGGCAACACACCCTCCTCATAGACCCG CTAGCAGGATCTTTCAGGCAGTTGGGGTTAAAATAAAGGACTAAAACTCA ATTGGGAAGATTGGTTGATATCCCATGTTTAGAGAGAATAGAAAAAGAGA AGCTgaccctccgatatcatcggaccgggccctattccgggatagtttcc tacccctagatacggaaatcacagcgcttaccagacattgtactctgtgc tcgcgacacatcagagccatgctgtatcgatgatgatactcGAACGGCAC GGGAAAACCTTGCGTTCTCGCAGGTACTGAACATATGAGTACCATCACCA CTCCACATTCAATGTCCAGCATATCTctccatactcttgtatcagagtaa tggtaccctATTCCCCTTACATGGTATGGGTTTACCCGGGCCAAGGTACg ctcacttgccaagtgaattgcagcaccgagtgggaatcgaaccctgacct ccagcacggaagtcaagaacgatgaccactacactactgcgcatgttttc gagccagaaaattcagtggggatggaaaaaatagcccaataatattttgc aatgacgatttgcttatctgatcaTTTTATGGGTGACAAaattataattt tccactgaggACGATGTTTCATCAATTTATCCAATAAGAAGGGtccctac cgggtctgtgagaaggaggtaaTTGCCATTGATTCCGAAATCCCGAATTG ACTAATTCCGAAACTCCTTGATGGGAAGAGAAGCCACTTATTTAAACTgc agaaagaaaaacaagcatgaattttttaaattgtttttattcacgtcttt ttttttaagaaactagttttaacaagcagcctcaatgtttcttaagaaat cggccttttgagccttaaatgtttcttatatgtttctaaactttttgaca taatcagcctcatggaaggctagactgaaaagttcttaaaaaaccgaatt taaaaatgttattttctcattctcagcctcagcatgtttttgttagatgt ttcttagtttttaggcattctgagcctagtgtttcttaaaagtgtgtttc ttaaaaaaaaaaacgggtaCTAGAttagttccatttatactgagacagaa aaatcgtctgagacgagtagtttgtaaaaAGTGATCTGCggaggagatcc tatttattgaaacatgaatggaaagttacactcctccataatgctcattt tctaaattgctcgtATCAGATAAATTAATCGTCtcacaatcatggacaaa aggttgtagacaaatgaaatttcagtgaaatatgataagaaatataatag agcaaaatgactcttcaatgtgtctgaaaaaggagtgaagttaagaaaaa cacttttgaagtcgttgcattgcttttaaATTGCTTTTGAAGGAACCACC AGCAAAAAAGCGAAAAGAAGATCAAGAAGCAAGCGAATCATTTGACCCAA CGAAGCTACGCGACCCCGAAAACGTTTTTAAGTCGCAGCCACAGACGAGT GGAAATGAAGAAGTCGTGAAAGAACTGTCCACTACATATACCTATATGAA AGGGAAATGTGGGCATTCTTTCATGAGCTCCTTAAAACCACGAATCTTTC ATTTCACCAAAGCTTTCACACCTTTATTTGCTTGGTTCCTTCCGATGCTA GCAGCAATCCTCCAGTTCTGTTTGAATGAGAGAAAGGAGGATGAAGTCGT GGTATTATGCGAAGATATCTGTCAAGTACAAATGGTTCAGTATGCCCTGG AAAGGATACACAAGCGTCCAATTGCATATGCACCTTACCTTACCGGAGAA TATCCTCAAGACATCCACAAGATGAaggaaaaattcatcaaaaatttaga CGAGATGGAGACAGTTCTGATATCCGATTATCGGTCTGTTCGTGGATTGG AAATGGCCCATACAATCATCTTTGTGGATCCAGAAAACGAGGCCAACGCA CATTTTCTCATCGAAGCAATCACACGAACCATAACAAATCTTGATGTCAT TTCAACAAAACCTTTTCCACAAAATCCTTCCACGAGTATCgaaagagctt ttcaaaaatatgtcgATGGGACTTTAGCTATTAAGACACACGTTGAATCA AGCAAAGACGCAGAAGATCTTCTGAAAGTACGATTCCAATACAACAAAAA GGACGGCTCAcaacaaacaaaaattatttcacagaAATTTACCGATTTCA GTTTCGACGTTTCACAATCTCTAgatgattttaacaaaaatgaagAGCTA TGGCAAAACTATTTCAGGTATAatttttctgttgaaattttcaattttta atgatCTTTATTATTACAAAAAGCTCAATGAGAGGATAAgtcatattttc caaaattaggcGCCCGCTAATCCTTTAGCCAAATATACTCCAGACTAAaa aaagtacatatttttttcctttaggAAGGCGTTTACTCTTTCAACTTCCA TTTCATCTTTGGGAACGTAAGTCAATACAGCTGATGTCCTCTGATTCGGC ATTCTGTTATTCGACAAGCTCCCATTGTCAATCAACTAACAgtcattttt gacaaatttcctttaaatttcTCATAAAAGATACCTCATCGGGGAAAAca tcgtcggggaaaagtgacgaaattttggctaaatgacgaatatttttccc cgacgaaaattttccccggccttaatgcgtttaccaactaccagcaagtg acgaatatttttccccgacaaaaagtttccccgacgaagttttccccgat aaggtacttttTTATCGGACATTCTATCGCTATCATCTTCTTGGGGTTGG TTTAATTTGAGATTCACGATTTAATCATTCATCGTAATGGACGATTCGCG ATTCATGTTCCATGCATAAATTATGTTGATCATGCGAAATCATGCTAATC ATGACAAAATGttttaggcaatttacaaagTTTTATTCGCAGAAACCAAC GACAAACTCAANGATCATGCGAAATCATGCTAATCATGACAAAATGtttt aggcaatttacaaagTTTGAAACCAACGacaaactcaattatttttaaaa acataatttatgtaagattatacaaattatattcaACGAAGCTTTCATTG CATTCTCCCGACTGTACCATGATCCTtaaggccgctacccactcagcatt ttatggtgaACAAGGCGCACAGCTTGGGAGCTTTGGTCGCTGAACGCTTT TCCTATTCCACTGATCCAAAATAAAGGGGAGATGTTctgcacattttttt cttttttctattgttgatacttttttgcacacggtacaagaaatgtctct tctgattggctatttaaaaaagaacaatagggaaGCCGCACAGCTTAGCT tagcgaaaaaagttgaaaagtttcaactcttgttgcgctcaaagcgacag cctttgaaggcttgatttatgtaatttatgcaataattaagcTGCGCGTC TTGTTCGcagaccataaaatgctgagtggatAGCGACctttaaaaagaaa gtaaatcACGTGCAGACACTTTCTGCGCTCTCTTTATTCATATCTGTtct ttacttcgtacattacggtccgcaaaccatggTGCTGAGAATATTGTTCG TCagtatattgtgtagtctaagtaatACCCTTAATTAGTTGTAGTTTTAT TGCTTACTGATTAGTTTTTTGCGTAAATTTACCGTcgtaaacaaaagcga gaaaagattatgccattgttttggAAATATGTTACATAGTTTAAGTTTTA TGTAAAATATTAAGGAATAAttagcatactttatgcatgggtCGCGAATC GTGCATCCTAAATTGTTAGACCGTCCATCTTAAATTGCACCAAACCGTCT CTCTGGGAGAGTTTTGATTTCTAGCATATGAAAGGGTTTTTGGAATATAG TATGAACTTTAGACGATCCTATCCTCAACACAATGTCACAACAAAAGGAA TAATTCGGGAAACgagataaatttgaaataacAGAGTTTAGTTCGGAGGG TTCGACATTCGTGAAAGATTCCCTATGAAGACTGAATGTTCTATTTCCTC GATTTTGCAATACTATATAAACTTCAAGTGTAGTAAAAAATTACCCTCGT TAGCAATGTAATATTCCAATCTccataaattttgtttttgctgtTCTGAA AGGTAAGtaataagtaagtctgcgaccgcagtcggaggcgacccgaaggc tcctctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNgagaggcatcaagtaccattttgggaatct ttggtatgacccggctgggggttgaacccacaaccttgcgaaccgtagcc ggatgctctaccactgtactacggtctgAAAGGTAAAGCTTCTATGGATG ATATATATTAATAATTTCTCTTGCATATAGCAACAAATGGGATGGCAAAA CCATGGAAAGTGTGACCTTGAATGATGGAACTACACTCAGTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012989XLOC_012989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023115-exon-sc0000443-1491911889:244782..246558TCONS_00023115-exon-sc0000443-1491911889:244782..246558Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1510915933:244782..246558TCONS_00023115-exon-sc0000443-1510915933:244782..246558Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1575043694:244782..246558TCONS_00023115-exon-sc0000443-1575043694:244782..246558Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1491911889:246679..246797TCONS_00023115-exon-sc0000443-1491911889:246679..246797Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1510915933:246679..246797TCONS_00023115-exon-sc0000443-1510915933:246679..246797Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1575043694:246679..246797TCONS_00023115-exon-sc0000443-1575043694:246679..246797Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1491911889:248492..249348TCONS_00023115-exon-sc0000443-1491911889:248492..249348Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1510915933:248492..249348TCONS_00023115-exon-sc0000443-1510915933:248492..249348Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1575043694:248492..249348TCONS_00023115-exon-sc0000443-1575043694:248492..249348Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1491911889:249506..249547TCONS_00023115-exon-sc0000443-1491911889:249506..249547Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1510915933:249506..249547TCONS_00023115-exon-sc0000443-1510915933:249506..249547Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1575043694:249506..249547TCONS_00023115-exon-sc0000443-1575043694:249506..249547Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1491911889:251662..251726TCONS_00023115-exon-sc0000443-1491911889:251662..251726Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1510915933:251662..251726TCONS_00023115-exon-sc0000443-1510915933:251662..251726Clytia hemisphaericaexon
TCONS_00023115-exon-sc0000443-1575043694:251662..251726TCONS_00023115-exon-sc0000443-1575043694:251662..251726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000443supercontigsc0000443:244782..251726 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141366 0.169686 0.159973 0.11385 0.948093 1.06921 2.22723 1.07043 0.903937 2.34609 1.12269 0.529021 0.654743 0.548331 1.47016 4.25124e-10 0 0 2.4788 0.335615 0.106091 2.88004 0 1.77563e-05 2.9942 0.616928 5.66495 5.34519 0.0403315 2.10554e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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