TCONS_00022763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022763
Unique NameTCONS_00022763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022763 ID=TCONS_00022763|Name=TCONS_00022763|organism=Clytia hemisphaerica|type=transcript|length=550bp
AATCCAGTGGGGCtaatctaaaatgaaaaaataatcaacaaaATCATGTG
TAATTTTTTTGGCTAAAAGAGAACAAAAGGTGCTTCATAGAAGCAACGCT
ACAAATTCAACCGCAAGTAAGGAAAATTAGAAATTACTGACTTTCTTAAA
TGTGCTGACTTGTGAAATCTTCACTGCCACTTTCTCAATCTTTTTCTCAA
TcactttttttgtatttgaagACGACtgcaaaatctttttaaaacgcTTT
AGACTTTTTTTTGATGTATCACCATATTTGACAATCTTTTTGTTAAACAG
ATTATCATTACTGTTTCTTCAGTAAGCTTTTGTGTACTTTGATGCTGTTC
GATGTTTTTTCCTTCTCTTTTAAGATAAGAGTATTTGAATAATACATGTC
AACATCTCCTTTTCACACAAATCGAGCATTGCTTCATATGTGAGAATTTG
ATCATTTAAGGGCCTCTGAAGGCTTCTTTTGGCTACATATCGTTTCACCG
ATCTACCTACACCATCACATGGAGATTTACCATGGCTAGCGGCAAAAATA
Run BLAST on NCBI

transcript from alignment at sc0000432:57951..58566+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022763 ID=TCONS_00022763|Name=TCONS_00022763|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at sc0000432:57951..58566+ (Clytia hemisphaerica)
AATCCAGTGGGGCtaatctaaaatgaaaaaataatcaacaaaATCATGTG
TAATTTTTTTGGCTAAAAGAGAACAAAAGGTGCTTCATAGAAGCAACGCT
ACAAATTCAACCGCAAGTAAGGAAAATTAGAAATTACTGACTTTCTTAAA
TGTGCTGACTTGTGAAATCTTCACTGCCACTTTCTCAATCTTTTTCTCAA
TcactttttttgtatttgaagACGACtgcaaaatctttttaaaacgcTTT
AGACTTTTTTTTGATGTATCACCATATTTGACAATCTTTTTGTTAAACAG
ATTATCATTACTGTTTCTTCAGTAAGCTTTTGTGTACTTTGATGCTGTTC
GATGTTTTTTCCTTCTCTTTTAAGATAAGAGTATTTGAATAATACATGTC
AACATCTCCGAATTTGTCATGTGTATTGTCATCAGAAATGANTAGAGTAT
TTGAATAATACATGTCAACATCTCCTTTTCACACAAATCGAGCATTGCTT
CATATGTGAGAATTTGATCATTTAAGGGCCTCTGAAGGCTTCTTTTGGCT
ACATATCGTTTCACCGATCTACCTACACCATCACATGGAGATTTACCATG
GCTAGCGGCAAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012783XLOC_012783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022763-exon-sc0000432-1491911889:57951..58345TCONS_00022763-exon-sc0000432-1491911889:57951..58345Clytia hemisphaericaexon
TCONS_00022763-exon-sc0000432-1510915933:57951..58345TCONS_00022763-exon-sc0000432-1510915933:57951..58345Clytia hemisphaericaexon
TCONS_00022763-exon-sc0000432-1575043694:57951..58345TCONS_00022763-exon-sc0000432-1575043694:57951..58345Clytia hemisphaericaexon
TCONS_00022763-exon-sc0000432-1491911889:58412..58566TCONS_00022763-exon-sc0000432-1491911889:58412..58566Clytia hemisphaericaexon
TCONS_00022763-exon-sc0000432-1510915933:58412..58566TCONS_00022763-exon-sc0000432-1510915933:58412..58566Clytia hemisphaericaexon
TCONS_00022763-exon-sc0000432-1575043694:58412..58566TCONS_00022763-exon-sc0000432-1575043694:58412..58566Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:57951..58566 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.163243	0	0.145567	0	1.58803	0.273832	0.26752	0.42999	0.285177	0.322547	0.622741	0	0.238669	0.169366	0	0	0	0.261957	2.51392e-08	0.352743	0.873441	1.10762	0.0148954	0.56376	0.15387	0.299078	0.484843	0.064478	0.174385	0.132015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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