|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022771 ID=TCONS_00022771|Name=TCONS_00022771|organism=Clytia hemisphaerica|type=transcript|length=1414bp
ATGCCATGGTAGACCATCTTCTTTGCACTTTAAATATGATAATGATTATA
TATGTCTGTTGTATTTTAAAAAGTCTtaagaaataaataacaaaataaaa
aaataacaagaaaatctcacaaaataaatcatCTGCAGCTGTATACTTTA
TCTCCATTTTCGTCTTTTGAGCTGCGGGCATACTTTAGAAACAGGGAGCT
CAATTTTTGGTTAGGCCCCAAAACATTGACCAAATAAGGCGTTATATCCT
CCTCCTTCCATCTCGGGCGTGTTTTGAAGAGCATGGTGAACCTCTCAGCT
GGACTGTCCGGTAGATCATGCTCggaaaaatgccaaataacCGGTGGGTG
GTTCTTCATATCAACTAGAGCCACACCTTTGAGATGCCCAAGGGAGGTAG
TCATGCCGTCAGGAACACTTTCTTTCCACGCAGTCATAAACtcgtgaaaa
ttgaatttcccAAGAGCAGGTCTTAGAATGTATTCTGCATAATAAGTACA
TACTTGATCCTCGCTTAAACTAAAAACACGTTTCTCTGTATCTGTTTCCA
CTCCATAAGTTTTCAAACAATGCTCAAGAACGAATTCAGGGTAGAGCTCA
TTTAACATCTCGACAGTCTCTGGTAAAGGAATTTCTTTCCAGCTCCAACA
CTTCTCTTCCATAAGAGCTAAAATCTGACTGAAGGCTTTCTCCTGGTAAT
TGATCTCCAATAGTAACCATTGATTATCGACGTAAATAGCACCTAATTGC
TTCAATCCTTCCATAAGTTCTTCCTTACTGGCTTTCTCCTGGTAATTGAT
CTCCAATAGTAACCATTGATTATCGACGTAAATAGCACCTAATTGCTTCA
ATCCTTCCATAAGTTCTTCCTTACTGGCTTGCACAGCGTCTAACAAATCA
TCTGTAGTCAGTTTTTGTGACCCCTCTAGAGACTCGCCAGAAAAACAATG
CTCTTTGAGGATAAACTTCAATCTCCCAAGACGTGCACGAGATAGTTTGA
CCTCGAAATATGAATTAAAACTACTATAGACTGGAAGGTCCACCAAATGT
TTATCACATTGAAAATTGTGCGTTTTGGGTGTTTGAATGTGAGGTAACAG
AAGCAAGGCGTTGGAGGTGTCGGCAGCTTTGAGatcaaatgttttgtttt
gtgtgCATAAGACAGCTTCATCTTCACCTTCGCCACGAATGGTGAGAATG
TTACCTTCTTTCACCAGATTTGCCAATTCATCTGTAAGCTCCAACAGTTT
GTATTCTTCTTTCATCCACGTATCAGAGTAATGTAAACATTGGATTGGTC
CTTTAGATTGTTGCACACCTGCTACTGTAGCTAGCTCGTTTATCTTCTCC
ATTCTCTGCATGGTTGTTcgttaaatttaattttgttattttttaaacgT
AAGTTAGATGCTGA Run BLAST on NCBI transcript from alignment at sc0000432:20422..22061- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022771 ID=TCONS_00022771|Name=TCONS_00022771|organism=Clytia hemisphaerica|type=transcript|length=1640bp|location=Sequence derived from alignment at sc0000432:20422..22061- (Clytia hemisphaerica)
ATGCCATGGTAGACCATCTTCTTTGCACTTTAAATATGATAATGATTATA
TATGTCTGTTGTATTTTAAAAAGTCTTAAGAAATAAATAACAAAATAAAA
AAATAACAAGAAAATCTCACAAAATAAATCATCTGCAGCTGTATACTTTA
TCTCCATTTTCGTCTTTTGAGCTGCGGGCATACTTTAGAAACAGGGAGCT
CAATTTTTGGTTAGGCCCCAAAACATTGACCAAATAAGGCGTTATATCCT
CCTCCTTCCATCTCGGGCGTGTTTTGAAGAGCATGGTGAACCTCTCAGCT
GGACTGTCCGGTAGATCATGCTCGGAAAAATGCCAAATAACCGGTGGGTG
GTTCTTCATATCAACTAGAGCCACACCTTTGAGATGCCCAAGGGAGGTAG
TCATGCCGTCAGGAACACTTTCTTTCCACGCAGTCATAAACTCGTGAAAA
TTGAATTTCCCAAGAGCAGGTCTTAGAATGTATTCTGCATAATAAGTACA
TACTTGATCCTCGCTTAAACTAAAAACACGTTTCTCTGTATCTGTTTCCA
CTCCATAAGTTTTCAAACAATGCTCAAGAACGAATTCAGGGTAGAGCTCA
TTTAACATCTCGACAGTCTCTGGTAAAGGAATTTCTTTCCAGCTCCAACA
CTTCTCTTCCATAAGAGCTAAAATCTGACTGAAGGCTTTCTCCTGGTAAT
TGATCTCCAATAGTAACCATTGATTATCGACGTAAATAGCACCTAATTGC
TTCAATCCTTCCATAAGTTCTTCCTTACTGGCTTGCACAGCGTCTAACAA
ATCATCTGTAGTCAGTTTTTGTGACCCCTCTNTCGCTTAAACTAAAAAAA
CGTTTCTCTGTATCTGTTTCCACTCCATAAGTTTTCAAACAATGCTCAAG
AACGAATTCAGGGTAGAGCTCATTTAACATCTGGACAGTCTCTGGAAAAG
GAATTTCTTTCCAGCTCCAACACTTCTCTTCCATAAGAGCTAAAATCTGA
CTGAAGGCTTTCTCCTGGTAATTGATCTCCAATAGTAACCATTGATTATC
GACGTAAATAGCACCTAATTGCTTCAATCCTTCCATAAGTTCTTCCTTAC
TGGCTTGCACAGCGTCTAACAAATCATCTGTAGTCAGTTTTTGTGACCCC
TCTAGAGACTCGCCAGAAAAACAATGCTCTTTGAGGATAAACTTCAATCT
CCCAAGACGTGCACGAGATAGTTTGACCTCGAAATATGAATTAAAACTAC
TATAGACTGGAAGGTCCACCAAATGTTTATCACATTGAAAATTGTGCGTT
TTGGGTGTTTGAATGTGAGGTAACAGAAGCAAGGCGTTGGAGGTGTCGGC
AGCTTTGAGATCAAATGTTTTGTTTTGTGTGCATAAGACAGCTTCATCTT
CACCTTCGCCACGAATGGTGAGAATGTTACCTTCTTTCACCAGATTTGCC
AATTCATCTGTAAGCTCCAACAGTTTGTATTCTTCTTTCATCCACGTATC
AGAGTAATGTAAACATTGGATTGGTCCTTTAGATTGTTGCACACCTGCTA
CTGTAGCTAGCTCGTTTATCTTCTCCATTCTCTGCATGGTTGTTCGTTAA
ATTTAATTTTGTTATTTTTTAAACGTAAGTTAGATGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022771-exon-sc0000432-1575043694:21282..22061 | TCONS_00022771-exon-sc0000432-1575043694:21282..22061 | Clytia hemisphaerica | exon |
| TCONS_00022771-exon-sc0000432-1575043694:20422..21055 | TCONS_00022771-exon-sc0000432-1575043694:20422..21055 | Clytia hemisphaerica | exon |
| TCONS_00022771-exon-sc0000432-1510915933:21282..22061 | TCONS_00022771-exon-sc0000432-1510915933:21282..22061 | Clytia hemisphaerica | exon |
| TCONS_00022771-exon-sc0000432-1510915933:20422..21055 | TCONS_00022771-exon-sc0000432-1510915933:20422..21055 | Clytia hemisphaerica | exon |
| TCONS_00022771-exon-sc0000432-1491911889:21282..22061 | TCONS_00022771-exon-sc0000432-1491911889:21282..22061 | Clytia hemisphaerica | exon |
| TCONS_00022771-exon-sc0000432-1491911889:20422..21055 | TCONS_00022771-exon-sc0000432-1491911889:20422..21055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:20422..22061 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR019128 | Dcc1 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007064 | mitotic sister chromatid cohesion |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0031390 | Ctf18 RFC-like complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007064 |
mitotic sister chromatid cohesion |
| cellular_component |
GO:0031390 |
Ctf18 RFC-like complex |
Blast
BLAST of TCONS_00022771 vs. Swiss-Prot (Human)
Match: DCC1 (Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1 PE=1 SV=2) HSP 1 Score: 226.098 bits (575), Expect = 4.291e-68 Identity = 141/384 (36.72%), Postives = 216/384 (56.25%), Query Frame = -3
Query: 132 EYKLLELTDELANLVKEGNILTIRGEGEDEAVLCTQNKTFDLKAADTSNALLLLPHIQTP---KTHNFQCDKHLVDLPVYSSFNSYFEVKLSRARLGRLKFILKEHCFSG-----ESLEGSQKLTTDDLLDAVQASKEELMEGLKQLGAIYVDNQWLLLEINYQEKASKEELMEGLKQLGAIYVDNQWLLLEINYQEKAFSQILALMEEKCWSWKEIPLPETVEMLNELYPEFVLEHCLKTYGVETDTEKRV-FSLSEDQVCTYYAEYILRPALGKFNFHEFMTAWKESVPDGMTTSLGHLKGVALVDMKNHPPVIWHFSEHDLPDSPAERFTMLFKTRPRWKEEDITPYLVNVLGPNQKLSSLFLKYARSSKDENGDKVYSCR 1256
++ LLEL L +++G+ L IRG+ +++AVLC+++KT+DLK ADTSN LL +P +TP K + C+ ++ ++ N+Y+E++ R +L +LK +L E+ + G E S K TT+DLLD +QAS+EE +M L+ L A + W +LE +Y+ K + + L++ + WS+ ++PL ++ L L PE ++EHCLK YG + E V F L D++C A +L+ A+ KFN EF W++SVP+GM TSL LKG+ALVD + P +I+ DLP+ ERF LF R +W EEDI PY+ ++ G Q + +L KY+ SS +NG KVY+ R
Sbjct: 42 DFCLLELEPTLCQQLEDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPGCKTPDQLKKEDSHCN--IIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPYEGPDSQKEKDSNSSKYTTEDLLDQIQASEEE--------------------------------IMTQLQVLNACKIGGYWRILEFDYEMKLLNHVTQLVDSESWSFGKVPLNTCLQELGPLEPEEMIEHCLKCYGKKYVDEGEVYFELDADKICRAAARMLLQNAV-KFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEIIFLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSSM-QNGVKVYNSR 389
The following BLAST results are available for this feature:
|
