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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022411 ID=TCONS_00022411|Name=TCONS_00022411|organism=Clytia hemisphaerica|type=transcript|length=1475bp
GGATATAGTTCTCACAAAGAAACCCAAGAACTTGCTAATCAGAAGACAAT
AGGACCGAAAAGGGGGTCCGAGGGAACAGATTTCATATAAATATTTCTGA
GGGTGATAAGTTGGTATAGACACTTCTCATTCCGGTTAAGATTCATTCCA
ATAAGACAGTACAAAGTCGAAGAGAAAGTCTAGAGATCTTAGAGAAAAAA
AGATGGAAACAAGTTTCACCCTTGAGCAATTTTGTACTGTATTTGAAGAT
ATTATCTCAAAGGAAAACTGCACATGCCGAAATCCGGAGGTATTCCAAGT
CGTTCCTAGTTGCGCTGATGGTATCCAATCTTCTACAACACCGGTCGTTA
TCCGAAGACAAACAGATGATTTTGCTTTCAGAATAGGTTACTCGTCAATC
TCCATATTATTGGGAGTATTTGGATTGCTTTGCAATAGCTATATCGTCAC
CAAACCTGGTCGAAAATGGAAAGAGTTGGCAAACTCACAACGTCTTATCC
TGTACTTGGCAATTACCAACATATTCTACacaattatttttctcataaga
acatccacaaaCTTTCTTTCATCTTCGTGGATACTTGGTGATCCACTATG
TAAATTGTTCATGTCCATAGCACCAGTTGGTTCGTCTCTATCCATTGGAT
TTGTGGCAATCATTGCGTATGAAAGATTTGTTGGCATAACCAGACCTTTA
TCTTCTTTGACCAATCGAATACTAAGCATTTTAACTCTCATTAATATTGT
CATTTCATTCGGAACAACAATCCCAAACTTCCTATACTCCGGTTTGCAGC
AAAATGGGAAATGCGAACAAAAATGGCAAAGTGATGTATTCGGATTAATT
TACAATACTTTGTATCTACTCATCCCAACACTTACCACAGTATCAATCAC
AACATTTTTTTACTACAAAATCAACATTAGtttaaaaaatgcaattttca
aggACAATTTTCTACAGAATTCCATCCAGAAGAAATCATATGAACATAAA
GTGAAACAAACATTGAGAATCggaaaaatcattaaattcaTTATCCTCAC
ATTCGGAATAATGGTGCCACCTTACCAAATCTGTTACATCATCCTTCTGG
CGACAGGTTTTGTGAATATCACATTGTTCAAGATTCTGACGTTCATTGCA
GTACCAATCTACCAAGCCCACGTGGTGTTACATCCTTTCCTATTCAGTGG
AATGCATAAAGAAGTCAACTGCTGGTTTCGATCTTTGTTTAGAAGAGCAA
GAAAGCATTTGGGTATTTCAAAAGCTTCATATGTAGTGAGCGGAAATACT
ACTCAAGTTTCAAGAACAACTGAGGCGAGTTGTATAAGCGAGACAAGAAC
AACTGATGCGAGTTGTATAAGCGAGAGTAGTCGAACAGACAGTTTCAATG
ACGAATCTTAAATCCTTTTAATCCTTTGACATATAATTGATTAAGAATTG
AACTTACATTTTTTCTGGCTCAGCG Run BLAST on NCBI protein sequence of TCONS_00022411-protein >TCONS_00022411-protein ID=TCONS_00022411-protein|Name=TCONS_00022411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
METSFTLEQFCTVFEDIISKENCTCRNPEVFQVVPSCADGIQSSTTPVVI
RRQTDDFAFRIGYSSISILLGVFGLLCNSYIVTKPGRKWKELANSQRLIL
YLAITNIFYTIIFLIRTSTNFLSSSWILGDPLCKLFMSIAPVGSSLSIGF
VAIIAYERFVGITRPLSSLTNRILSILTLINIVISFGTTIPNFLYSGLQQ
NGKCEQKWQSDVFGLIYNTLYLLIPTLTTVSITTFFYYKINISLKNAIFK
DNFLQNSIQKKSYEHKVKQTLRIGKIIKFIILTFGIMVPPYQICYIILLA
TGFVNITLFKILTFIAVPIYQAHVVLHPFLFSGMHKEVNCWFRSLFRRAR
KHLGISKASYVVSGNTTQVSRTTEASCISETRTTDASCISESSRTDSFND
ES Run BLAST on NCBI transcript from alignment at sc0000414:117348..118822 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022411 ID=TCONS_00022411|Name=TCONS_00022411|organism=Clytia hemisphaerica|type=transcript|length=1475bp|location=Sequence derived from alignment at sc0000414:117348..118822 (Clytia hemisphaerica)
CGCTGAGCCAGAAAAAATGTAAGTTCAATTCTTAATCAATTATATGTCAA
AGGATTAAAAGGATTTAAGATTCGTCATTGAAACTGTCTGTTCGACTACT
CTCGCTTATACAACTCGCATCAGTTGTTCTTGTCTCGCTTATACAACTCG
CCTCAGTTGTTCTTGAAACTTGAGTAGTATTTCCGCTCACTACATATGAA
GCTTTTGAAATACCCAAATGCTTTCTTGCTCTTCTAAACAAAGATCGAAA
CCAGCAGTTGACTTCTTTATGCATTCCACTGAATAGGAAAGGATGTAACA
CCACGTGGGCTTGGTAGATTGGTACTGCAATGAACGTCAGAATCTTGAAC
AATGTGATATTCACAAAACCTGTCGCCAGAAGGATGATGTAACAGATTTG
GTAAGGTGGCACCATTATTCCGAATGTGAGGATAAtgaatttaatgattt
ttccGATTCTCAATGTTTGTTTCACTTTATGTTCATATGATTTCTTCTGG
ATGGAATTCTGTAGAAAATTGTccttgaaaattgcattttttaaaCTAAT
GTTGATTTTGTAGTAAAAAAATGTTGTGATTGATACTGTGGTAAGTGTTG
GGATGAGTAGATACAAAGTATTGTAAATTAATCCGAATACATCACTTTGC
CATTTTTGTTCGCATTTCCCATTTTGCTGCAAACCGGAGTATAGGAAGTT
TGGGATTGTTGTTCCGAATGAAATGACAATATTAATGAGAGTTAAAATGC
TTAGTATTCGATTGGTCAAAGAAGATAAAGGTCTGGTTATGCCAACAAAT
CTTTCATACGCAATGATTGCCACAAATCCAATGGATAGAGACGAACCAAC
TGGTGCTATGGACATGAACAATTTACATAGTGGATCACCAAGTATCCACG
AAGATGAAAGAAAGtttgtggatgttcttatgagaaaaataattgtGTAG
AATATGTTGGTAATTGCCAAGTACAGGATAAGACGTTGTGAGTTTGCCAA
CTCTTTCCATTTTCGACCAGGTTTGGTGACGATATAGCTATTGCAAAGCA
ATCCAAATACTCCCAATAATATGGAGATTGACGAGTAACCTATTCTGAAA
GCAAAATCATCTGTTTGTCTTCGGATAACGACCGGTGTTGTAGAAGATTG
GATACCATCAGCGCAACTAGGAACGACTTGGAATACCTCCGGATTTCGGC
ATGTGCAGTTTTCCTTTGAGATAATATCTTCAAATACAGTACAAAATTGC
TCAAGGGTGAAACTTGTTTCCATCTTTTTTTCTCTAAGATCTCTAGACTT
TCTCTTCGACTTTGTACTGTCTTATTGGAATGAATCTTAACCGGAATGAG
AAGTGTCTATACCAACTTATCACCCTCAGAAATATTTATATGAAATCTGT
TCCCTCGGACCCCCTTTTCGGTCCTATTGTCTTCTGATTAGCAAGTTCTT
GGGTTTCTTTGTGAGAACTATATCC Coding sequence (CDS) from alignment at sc0000414:117348..118822 >TCONS_00022411 ID=TCONS_00022411|Name=TCONS_00022411|organism=Clytia hemisphaerica|type=CDS|length=1209bp|location=Sequence derived from alignment at sc0000414:117348..118822 (Clytia hemisphaerica)
TTAAGATTCGTCATTGAAACTGTCTGTTCGACTACTCTCGCTTATACAAC
TCGCATCAGTTGTTCTTGTCTCGCTTATACAACTCGCCTCAGTTGTTCTT
GAAACTTGAGTAGTATTTCCGCTCACTACATATGAAGCTTTTGAAATACC
CAAATGCTTTCTTGCTCTTCTAAACAAAGATCGAAACCAGCAGTTGACTT
CTTTATGCATTCCACTGAATAGGAAAGGATGTAACACCACGTGGGCTTGG
TAGATTGGTACTGCAATGAACGTCAGAATCTTGAACAATGTGATATTCAC
AAAACCTGTCGCCAGAAGGATGATGTAACAGATTTGGTAAGGTGGCACCA
TTATTCCGAATGTGAGGATAAtgaatttaatgatttttccGATTCTCAAT
GTTTGTTTCACTTTATGTTCATATGATTTCTTCTGGATGGAATTCTGTAG
AAAATTGTccttgaaaattgcattttttaaaCTAATGTTGATTTTGTAGT
AAAAAAATGTTGTGATTGATACTGTGGTAAGTGTTGGGATGAGTAGATAC
AAAGTATTGTAAATTAATCCGAATACATCACTTTGCCATTTTTGTTCGCA
TTTCCCATTTTGCTGCAAACCGGAGTATAGGAAGTTTGGGATTGTTGTTC
CGAATGAAATGACAATATTAATGAGAGTTAAAATGCTTAGTATTCGATTG
GTCAAAGAAGATAAAGGTCTGGTTATGCCAACAAATCTTTCATACGCAAT
GATTGCCACAAATCCAATGGATAGAGACGAACCAACTGGTGCTATGGACA
TGAACAATTTACATAGTGGATCACCAAGTATCCACGAAGATGAAAGAAAG
tttgtggatgttcttatgagaaaaataattgtGTAGAATATGTTGGTAAT
TGCCAAGTACAGGATAAGACGTTGTGAGTTTGCCAACTCTTTCCATTTTC
GACCAGGTTTGGTGACGATATAGCTATTGCAAAGCAATCCAAATACTCCC
AATAATATGGAGATTGACGAGTAACCTATTCTGAAAGCAAAATCATCTGT
TTGTCTTCGGATAACGACCGGTGTTGTAGAAGATTGGATACCATCAGCGC
AACTAGGAACGACTTGGAATACCTCCGGATTTCGGCATGTGCAGTTTTCC
TTTGAGATAATATCTTCAAATACAGTACAAAATTGCTCAAGGGTGAAACT
TGTTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022411-exon-sc0000414-1491911889:117348..118822 | TCONS_00022411-exon-sc0000414-1491911889:117348..118822 | Clytia hemisphaerica | exon |
| TCONS_00022411-exon-sc0000414-1510915933:117348..118822 | TCONS_00022411-exon-sc0000414-1510915933:117348..118822 | Clytia hemisphaerica | exon |
| TCONS_00022411-exon-sc0000414-1575043694:117348..118822 | TCONS_00022411-exon-sc0000414-1575043694:117348..118822 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000414 | supercontig | sc0000414:117348..118822 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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