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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022390 ID=TCONS_00022390|Name=TCONS_00022390|organism=Clytia hemisphaerica|type=transcript|length=10401bp protein sequence of TCONS_00022390-protein >TCONS_00022390-protein ID=TCONS_00022390-protein|Name=TCONS_00022390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1113bp MLRYNFRPSLVDHAQIMILVRSFYNCSDQDHNFVLRKLGVFSYATIKDSDRun BLAST on NCBI transcript from alignment at sc0000414:22188..61113- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022390 ID=TCONS_00022390|Name=TCONS_00022390|organism=Clytia hemisphaerica|type=transcript|length=38926bp|location=Sequence derived from alignment at sc0000414:22188..61113- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000414:22188..61113- >TCONS_00022390 ID=TCONS_00022390|Name=TCONS_00022390|organism=Clytia hemisphaerica|type=CDS|length=66840bp|location=Sequence derived from alignment at sc0000414:22188..61113- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022390 vs. Swiss-Prot (Human)
Match: TPPC9 (Trafficking protein particle complex subunit 9 OS=Homo sapiens GN=TRAPPC9 PE=1 SV=2) HSP 1 Score: 355.525 bits (911), Expect = 2.646e-100 Identity = 275/927 (29.67%), Postives = 448/927 (48.33%), Query Frame = 2
Query: 2504 DHAQIMILVRSFYNCSDQDHNFVLRKLGVFSYATIKDSDRRLLLRFTKGYNRDVLEWGRIQLHRRPLGFIGVA-CLSNDPVQQPKDYDRIVHRFDNLISQYESFLYDSRCIIVGPENPSIENLRKDIIYLPITELDITDGFEKAVADFISSLFVILESKRVEKISE-NFERMVMPSAPCEQEQTIS-DADTRQMKRKCLGRNKKILADLCLMAGLYPESLVHYNNSVEHLRNVNDYLWMGAGLEGVCAASNIM-----TIGDQALK-----------ASRYTRG---LVIDQTNIQINVTTDSAFEEQLRNMTILDDNGMIAKYSECLSCFKRFSSTGPLEMESHFKFIRALIRMQKKLEVAQVIQCLLLLPISSNLNEVEKIDFSSVLSSIHEQLSLHXXXXXXXXXXXXXXVQSNPGKPALAKAMSYLQEVCPSYKLQMEQPTNVEKKHDSNKGWPSIQLIILLDMLNITRKLGNKLDSVRLLCFILERYGDHLNPETHSELVDLLEEFSDDTSPLVNETKDDVVQLIRP------LPIIRDFAAKRLAHYLQPLKVKK-----AESDGPFIFSALSSKMKKDEG----DIIWVSGDVSEVAMVVDNPLPAEIKVNNMTLITEGTEFEAHPATLALPADSGSFPFMLLGTPIKPGSLSIKGYRVEVLGISNVVLL-------PEPITVEVTPMLPILKLSSTLPRAPNSSSLNPEDKHYQTLFTSANLYRGHSCTGQVTLENAGKVAVTKLDIKLNKPKEVNVIFNE------EQVQKQLPLAPGD--------SIHLDV----------------------------VIMPEASWKL-----------YNNKDKIETMLIMSYSCEEGEQGGYTREIYWVTIIKVMPSLEFSNLELFEI--ERQPDLCLICFDVENMTSISMNV 4987
DH ++++V+ S+++ + +++ S +++DS R L +R+ Y + EWG Q HR+ +G I + C S KD+ + +F Y S LYDSR + G + +E R D+ + P E T EK + DFI SLF++LESKR+++ ++ + +++ + P E++ + D D+R K++C GR +K + DLCL AG+ +SLVHY+ SVE LR+VND+LW+GA LEG+C+AS I T G + A+R+ G ++ID + N E R L +I KY E +S + ++ + G +E+E+ K +R L ++ +E ++ +Q + + + L+E EKI S+LS ++E + HRK+AF++R AAM V + +P L E P Y L ++ P + + +++GW ++Q+ +L +++ +R++GN SVR L F+L+ D L+ + ++ LE ++ P E L P LPI+R L L+P K+K + PFI+S + + + +E D WV GDV EV ++V NP+P E++V NM L+T G EFE+ PA L+LPA+SG +P L+G P G++++ GY V G+ + LL TVEV P LP L++S++LPR+ + SL P + S LY G S + LEN G + KL++ ++ + E+ Q PL PG + LD V+ P K Y++ +E +L YS G GY R + ++V PS+ F+ + RQ C + DV N T + V
Sbjct: 12 DHQTLLVVVQPVGIVSEENFFRIYKRICSVSQISVRDSQRVLYIRYRHHYPPENNEWGDFQTHRKVVGLITITDCFS------AKDWPQTFEKFHVQKEIYGSTLYDSRLFVFGLQGEIVEQPRTDVAFYPNYEDCQT--VEKRIEDFIESLFIVLESKRLDRATDKSGDKIPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLRSVNDFLWLGAALEGLCSASVIYHYPGGTGGKSGARRFQGSTLPAEAANRHRPGAQEVLIDPGALTTNGINPDTSTEIGRAKNCLSPEDIIDKYKEAISYYSKYKNAGVIELEACIKAVRVLAIQKRSMEASEFLQNAVYINLR-QLSEEEKIQRYSILSELYELIGFHRKSAFFKRVAAMQCVAPSIAEPGWRACYKLLLETLPGYSLSLD-PKDFSR--GTHRGWAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVAQSLENYTSKC-PGTMEPIALPGGLTLPPVPFTKLPIVRHVKLLNLPASLRPHKMKSLLGQNVSTKSPFIYSPIIAHNRGEERNKKIDFQWVQGDVCEVQLMVYNPMPFELRVENMGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVNGYHTTVFGVFSDCLLDNLPGIKTSGSTVEVIPALPRLQISTSLPRS--AHSLQPSSGDEISTNVSVQLYNGESQQLIIKLENIGMEPLEKLEVTSKVLTTKEKLYGDFLSWKLEETLAQFPLQPGKVATFTINIKVKLDFSCQENLLQDLSDDGISVSGFPLSSPFRQVVRPRVEGKPVNPPESNKAGDYSHVKTLEAVLNFKYSGGPGHTEGYYRNLSLGLHVEVEPSVFFTRVSTLPATSTRQ---CHLLLDVFNSTEHELTV 920 The following BLAST results are available for this feature:
BLAST of TCONS_00022390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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