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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022293 ID=TCONS_00022293|Name=TCONS_00022293|organism=Clytia hemisphaerica|type=transcript|length=1690bp
GTTCGCAAAACCAGACGACGGCCCTTTCTCGATGTGTCTTTCACTCGTAG
TATTGATTAAACACATAAAACACGAGTATGAGCTTCTTAAAGACGTTCGC
AGACTAAATGAATGTACTCACCATTACAAGAGCTCTTGAAACTTCATTGG
GGTTGGAATCTTCAGATGGGTTGTATGGACGAACGATGCAATGTTTTGTG
TCGTCTTTATCGAATTTGCTGACAGCGATGCCCTTCGAGGATACAGTAGG
TGGAATAAATGAACATTGCTTTTTATTACTACACGTCTTGTATAAGAGAA
TATAAGGCTTTATGGccaaatattaagaaaaagtttagaacattttaagg
ctttatggactctaaaacatcccaatttcttagaaaattggaaaaaaact
cacaaaatggtgaaactaacaacattttaagaacaccttaggtttaaaac
tcaaaaatctaaaaacatccgaagggctcgaagattttggatgttcttat
aaaaaccggGTATGTCATTCAGGAAACACAAAGAATGTTTATCTGTATTC
TAACAAGTCCTCCCCTTTCAANAATTTGTGAAGCCCTCTGCAGTCAAATC
CTCCTTTTTGTAAGTCCATTGGACATTTGACCAAATATGTGCATGAGCTT
CGTCGGATTTTGCACTCAGCACGGAGTTTGTCACCAGGGCAAGTCATGAT
TTTCATGGTTGAGGCGTTTGTACAAGCGGTAAATTCACGAAGAACAGCTC
GCTTCTTGGAATTCTTCTTGGCagctgaaaagaaaaattaatgaattttT
CTTCCACTTGTGAATCATTTGAAAGGAGGTGGCCGCTACACTATTTCATG
TAACTAAAGGTACTGAGTTAGTATTGCAAATGTCTACATATTGGAGCAAT
TAATTAAAAAAGACATTGCACCACTAGGCATTACAAGGTATTCCACAGaa
gaaaaaacgtttttcataCCTTTAGCTTGTTTGACAGCGATTTCGGCGGC
TTGTTTCAAAGTGGTGACTACTTGTCTTGTCACGATAGCTCGTCCAGCGC
AGAAGTTCTTGATGTGTTGTGGTAAGGAAGCAGCGTTTTCGTAAGGTTCC
ATCAAAAACATATGTTTGATCTCTTCTACTTTATCGGGCATTTCGTTCTT
CGTCTGCAGgaagaggaaaaagaagaaaaaatttagtcgttaattttatt
ttgttaattcaTTGATTGAATATATTAGTAACCACTCCAGTATTTAACCG
ACAAAGGCTTCGCTCGTTGGCAGAATTAACCAAACAAATCATTCCAACAT
CTTTGAGGGGAGTACCGTGAAATAGAGTGATAATGTCAAACTACCGTAGG
TAGATAACTGATTTTATGGGATTTAATTACATAAAGATGTTCCATTTACC
ATTCAATTCACCAAGTTTAACCGTCTAAGGTccgtctcaatataatctgc
agtgaAGGCAAAGAAGGTCCTAACTTGATGGATAGCTTTGAAAAGGGGTC
CCGTGTttattaaaaatatattcaagaGTGGAATATCACCAAATAATGAA
AGATAAGCTACGTGCTGAGATAAATTtatccaaaatatattttttatcga
aaatcaGTCTCCGTCAAATTTTAGGTATTCCCCATttcgcatcattgtgc
aaaaaatcgaaataaagtAACGGGTCAATCCCGAAAAAAT Run BLAST on NCBI transcript from alignment at sc0000411:29829..31571+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022293 ID=TCONS_00022293|Name=TCONS_00022293|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at sc0000411:29829..31571+ (Clytia hemisphaerica)
GTTCGCAAAACCAGACGACGGCCCTTTCTCGATGTGTCTTTCACTCGTAG
TATTGATTAAACACATAAAACACGAGTATGAGCTTCTTAAAGACGTTCGC
AGACTAAATGAATGTACTCACCATTACAAGAGCTCTTGAAACTTCATTGG
GGTTGGAATCTTCAGATGGGTTGTATGGACGAACGATGCAATGTTTTGTG
TCGTCTTTATCGAATTTGCTGACAGCGATGCCCTTCGAGGATACAGTAGG
TGGAATAAATGAACATTGCTTTTTATTACTACACGTCTTGTATAAGAGAA
TATAAGGCTTTATGGCCTCTAAAACatcccaatttcttagaaaattggaa
aaaaactcACACNCATGGccaaatattaagaaaaagtttagaacatttta
aggctttatggactctaaaacatcccaatttcttagaaaattggaaaaaa
actcacaaaatggtgaaactaacaacattttaagaacaccttaggtttaa
aactcaaaaatctaaaaacatccgaagggctcgaagattttggatgttct
tataaaaaccggGTATGTCATTCAGGAAACACAAAGAATGTTTATCTGTA
TTCTAACAAGTCCTCCCCTTTCAANAATTTGTGAAGCCCTCTGCAGTCAA
ATCCTCCTTTTTGTAAGTCCATTGGACATTTGACCAAATATGTGCATGAG
CTTCGTCGGATTTTGCACTCAGCACGGAGTTTGTCACCAGGGCAAGTCAT
GATTTTCATGGTTGAGGCGTTTGTACAAGCGGTAAATTCACGAAGAACAG
CTCGCTTCTTGGAATTCTTCTTGGCagctgaaaagaaaaattaatgaatt
ttTCTTCCACTTGTGAATCATTTGAAAGGAGGTGGCCGCTACACTATTTC
ATGTAACTAAAGGTACTGAGTTAGTATTGCAAATGTCTACATATTGGAGC
AATTAATTAAAAAAGACATTGCACCACTAGGCATTACAAGGTATTCCACA
GaagaaaaaacgtttttcataCCTTTAGCTTGTTTGACAGCGATTTCGGC
GGCTTGTTTCAAAGTGGTGACTACTTGTCTTGTCACGATAGCTCGTCCAG
CGCAGAAGTTCTTGATGTGTTGTGGTAAGGAAGCAGCGTTTTCGTAAGGT
TCCATCAAAAACATATGTTTGATCTCTTCTACTTTATCGGGCATTTCGTT
CTTCGTCTGCAGgaagaggaaaaagaagaaaaaatttagtcgttaatttt
attttgttaattcaTTGATTGAATATATTAGTAACCACTCCAGTATTTAA
CCGACAAAGGCTTCGCTCGTTGGCAGAATTAACCAAACAAATCATTCCAA
CATCTTTGAGGGGAGTACCGTGAAATAGAGTGATAATGTCAAACTACCGT
AGGTAGATAACTGATTTTATGGGATTTAATTACATAAAGATGTTCCATTT
ACCATTCAATTCACCAAGTTTAACCGTCTAAGGTccgtctcaatataatc
tgcagtgaAGGCAAAGAAGGTCCTAACTTGATGGATAGCTTTGAAAAGGG
GTCCCGTGTttattaaaaatatattcaagaGTGGAATATCACCAAATAAT
GAAAGATAAGCTACGTGCTGAGATAAATTtatccaaaatatattttttat
cgaaaatcaGTCTCCGTCAAATTTTAGGTATTCCCCATttcgcatcattg
tgcaaaaaatcgaaataaagtAACGGGTCAATCCCGAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022293-exon-sc0000411-1491911889:29829..30139 | TCONS_00022293-exon-sc0000411-1491911889:29829..30139 | Clytia hemisphaerica | exon |
| TCONS_00022293-exon-sc0000411-1510915933:29829..30139 | TCONS_00022293-exon-sc0000411-1510915933:29829..30139 | Clytia hemisphaerica | exon |
| TCONS_00022293-exon-sc0000411-1575043694:29829..30139 | TCONS_00022293-exon-sc0000411-1575043694:29829..30139 | Clytia hemisphaerica | exon |
| TCONS_00022293-exon-sc0000411-1491911889:30193..31571 | TCONS_00022293-exon-sc0000411-1491911889:30193..31571 | Clytia hemisphaerica | exon |
| TCONS_00022293-exon-sc0000411-1510915933:30193..31571 | TCONS_00022293-exon-sc0000411-1510915933:30193..31571 | Clytia hemisphaerica | exon |
| TCONS_00022293-exon-sc0000411-1575043694:30193..31571 | TCONS_00022293-exon-sc0000411-1575043694:30193..31571 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000411 | supercontig | sc0000411:29829..31571 + |
Blast
The following BLAST results are available for this feature:
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