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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022290 ID=TCONS_00022290|Name=TCONS_00022290|organism=Clytia hemisphaerica|type=transcript|length=2568bp
CTCTCAGAAGATTTATCGTTTGGAAAAGGGATAGCAAGAGATTAAATTCA
ATATCCCAGTAAATTTTAAACCAAGGAGTCCAAAATCTTAATCCAAAATG
ATTCCCCTTTAGAATGTCTGAATTtgttaagttttcaaaatggTATTCGG
AAAATTCAGCCCGAGCGTGCAAGTTTTTaaatacacattgttttttttaa
gaaactagttctACTAATAAGCAGCctaaatgtttcttaagaaatcggcc
ttttgagccttaaatgtttcttacatgtttctaaacttcttgacataatc
agcctcatggaaggctggattggaaggttcttaaaaaacaaattgaaaaa
tgttattttctcattctcagccttagcatgtttcttagatgtttcttagt
ttttaggcattctgagcctcatgtttcttaaaagtgtgtttcttaaaaaa
acctaTCTAAATTTGTACGCTTAAATCGGGGTgtggggggtacttaggca
aatggaggatACGGTACCTTTTCTGGACTTTTAAAGTCCGGCTaggggtc
ggaaaaatcagaaaatcaaatttcagccccactaagggtcagaaaaatag
gaaaacttaaactttttaccccctgaaagatcgaaatttggtcaaaattg
gtcaaatttgcgggacaaagggtcgtaaaattcccaaaattttcctttgt
tttctcttttttatttccGGTAAGGGTCCacagttcgaaagtcgggcggc
atccCCGTCAGCTTGcagccctagtacccccccccccggggcttaAATAA
AACGAATGAGAATAATTTCCAAAAGTTGAAAGTCCTAAAATcgagaaaat
tcaaattttaataatttgtaaatttctcaacttcatgcaaaaaataaatc
atctaacatttttctttcaagcatgtcttcatcttttttcaaagatttgg
tTTTCGAGTTAGTAGTAGTTCTTTTTCCATAAACTTTATCAAGCCCTTTA
GGCTTTGTTTTCGAGTAACTGTTTGAAGATGTGGTAGACCTTGACTTGAG
AGAACTACTTCGTTTCATGCTGTATTGATCGACAGATGTACTTGTGGACC
GAGGCTGTATTCCTTCAATTAACTCTAACATAGATGAGGGTTTGAAATGT
TTACGTTGAAGAGGTGACACCAGGATCATTTCCTCATGTTCAGCATCTTC
ATCTGATGTTGTTGATTTCGAAAAACAAACACTCTTTTGTGGTGGTGGGC
TCGAGTGTACTGATGTCCTTTTATACGCTTTCAATGATCTATTTGAAGTA
CCTTGCCTTGTTGGTTTCGAGTCAACGTCAAACTTCTCTTTGGTACTACG
TTCTTCTAACATTCTTGCATCTCTAGAGGAAGAGCATTTCATCTGACTTG
AAAAAGCTTTGTTTTGATGTCTGTAGCTTGATTTTATAACTAATGGTGAA
TCTTTCAAAGTAGGTTCTCGAGGTGTCTCGGTTTGTACTTCCATATCCAC
AGTATGCTTCACTGGTTGTTTTATCTTTTTAGTCTGTTCATTGTTGTATG
TTTCAAGTTGAGTTGATTTAGGACTGTTTTTAACGAGTTCAGCTTTGTTT
CCCTTTAGGTCGTGGCTTTCAGTTTGCATGGATAAATCAGCGAGGGTGCT
ATTTGTGTGTTTAGATGCTGATTGTTGAAGGTAAGATTCAAGTTTTTTGC
TATTCAAACCAACAGTAGGCTTCTTTGGAGTTTTTTCAGTTTGTTGTTTG
ATGACAGATTCTTGTAGTTTTTGAAGCTGTTCAATTTGCTCTTGTAAGAT
ATTTTGTTGGCgttcaaacttcttttcttgCTCTAGGAAAAGGTCTGAAA
AGTTGTCAATCAGACTGGTTTCAGATTTAGCATCAAGATCCATAATACTT
TGTGCATTTTGTTGGTTTGATTTCATTTCCTCCACCAGTATTTGATATTC
TGTCAGTTTATCTTTCATTAAATTGTGTTGATGGATAGCTTCTTCTTTCT
CACGCTGAAGTTGCATTTTCAAAGAACTATAATTTTCTTTCACGTCATTT
AATTCTTTGACAGCCTTTTGTTTTTCACTTCCAAATTTAGCAAGTTCTTG
AATGagctttgttattttttgtttgtccTCTGAATTGAGGTCCTTAATAC
CAACAGACCTGGTGTATACCTTTGGGGAGGTAAATGATGCCacactttct
ttcttttctggaacttttgatttattttggtTAGCAATCATGACATTGAC
ATCTGGAATCTCTTTCTCTTTTGCATTGACAGTCTTAACTTTGGATCTTG
GAACATTCTTTGCAAGCCACGGTTTTGGTCGTGCTGTAACTTCAGTTGAA
TTCAAAATCTTACTTGGTTCTTGAAATTTGGTTGGATCCAGCACATTACG
AAATTGATCTGAGTTCTGTGGAAAATCTTCCCAATAAATCTTCACGGGAt
ctattttcttcatttctatttctttttctgttttcactactgaaatcaaa
aagttaacaaacatgtataaatcattttgattagaagaaaaaattcttaa
gtctaaaatctctaaaat Run BLAST on NCBI protein sequence of TCONS_00022290-protein >TCONS_00022290-protein ID=TCONS_00022290-protein|Name=TCONS_00022290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp
ILEILDLRIFSSNQNDLYMFVNFLISVVKTEKEIEMKKIDPVKIYWEDFP
QNSDQFRNVLDPTKFQEPSKILNSTEVTARPKPWLAKNVPRSKVKTVNAK
EKEIPDVNVMIANQNKSKVPEKKESVASFTSPKVYTRSVGIKDLNSEDKQ
KITKLIQELAKFGSEKQKAVKELNDVKENYSSLKMQLQREKEEAIHQHNL
MKDKLTEYQILVEEMKSNQQNAQSIMDLDAKSETSLIDNFSDLFLEQEKK
FERQQNILQEQIEQLQKLQESVIKQQTEKTPKKPTVGLNSKKLESYLQQS
ASKHTNSTLADLSMQTESHDLKGNKAELVKNSPKSTQLETYNNEQTKKIK
QPVKHTVDMEVQTETPREPTLKDSPLVIKSSYRHQNKAFSSQMKCSSSRD
ARMLEERSTKEKFDVDSKPTRQGTSNRSLKAYKRTSVHSSPPPQKSVCFS
KSTTSDEDAEHEEMILVSPLQRKHFKPSSMLELIEGIQPRSTSTSVDQYS
MKRSSSLKSRSTTSSNSYSKTKPKGLDKVYGKRTTTNSKTKSLKKDEDML
ERKMLDDLFFA Run BLAST on NCBI transcript from alignment at sc0000410:210483..213050 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022290 ID=TCONS_00022290|Name=TCONS_00022290|organism=Clytia hemisphaerica|type=transcript|length=2568bp|location=Sequence derived from alignment at sc0000410:210483..213050 (Clytia hemisphaerica)
attttagagattttagacttaagaattttttcttctaatcaaaatgattt
atacatgtttgttaactttttgatttcagtagtgaaaacagaaaaagaaa
tagaaatgaagaaaatagaTCCCGTGAAGATTTATTGGGAAGATTTTCCA
CAGAACTCAGATCAATTTCGTAATGTGCTGGATCCAACCAAATTTCAAGA
ACCAAGTAAGATTTTGAATTCAACTGAAGTTACAGCACGACCAAAACCGT
GGCTTGCAAAGAATGTTCCAAGATCCAAAGTTAAGACTGTCAATGCAAAA
GAGAAAGAGATTCCAGATGTCAATGTCATGATTGCTAaccaaaataaatc
aaaagttccagaaaagaaagaaagtgtGGCATCATTTACCTCCCCAAAGG
TATACACCAGGTCTGTTGGTATTAAGGACCTCAATTCAGAggacaaacaa
aaaataacaaagctCATTCAAGAACTTGCTAAATTTGGAAGTGAAAAACA
AAAGGCTGTCAAAGAATTAAATGACGTGAAAGAAAATTATAGTTCTTTGA
AAATGCAACTTCAGCGTGAGAAAGAAGAAGCTATCCATCAACACAATTTA
ATGAAAGATAAACTGACAGAATATCAAATACTGGTGGAGGAAATGAAATC
AAACCAACAAAATGCACAAAGTATTATGGATCTTGATGCTAAATCTGAAA
CCAGTCTGATTGACAACTTTTCAGACCTTTTCCTAGAGcaagaaaagaag
tttgaacGCCAACAAAATATCTTACAAGAGCAAATTGAACAGCTTCAAAA
ACTACAAGAATCTGTCATCAAACAACAAACTGAAAAAACTCCAAAGAAGC
CTACTGTTGGTTTGAATAGCAAAAAACTTGAATCTTACCTTCAACAATCA
GCATCTAAACACACAAATAGCACCCTCGCTGATTTATCCATGCAAACTGA
AAGCCACGACCTAAAGGGAAACAAAGCTGAACTCGTTAAAAACAGTCCTA
AATCAACTCAACTTGAAACATACAACAATGAACAGACTAAAAAGATAAAA
CAACCAGTGAAGCATACTGTGGATATGGAAGTACAAACCGAGACACCTCG
AGAACCTACTTTGAAAGATTCACCATTAGTTATAAAATCAAGCTACAGAC
ATCAAAACAAAGCTTTTTCAAGTCAGATGAAATGCTCTTCCTCTAGAGAT
GCAAGAATGTTAGAAGAACGTAGTACCAAAGAGAAGTTTGACGTTGACTC
GAAACCAACAAGGCAAGGTACTTCAAATAGATCATTGAAAGCGTATAAAA
GGACATCAGTACACTCGAGCCCACCACCACAAAAGAGTGTTTGTTTTTCG
AAATCAACAACATCAGATGAAGATGCTGAACATGAGGAAATGATCCTGGT
GTCACCTCTTCAACGTAAACATTTCAAACCCTCATCTATGTTAGAGTTAA
TTGAAGGAATACAGCCTCGGTCCACAAGTACATCTGTCGATCAATACAGC
ATGAAACGAAGTAGTTCTCTCAAGTCAAGGTCTACCACATCTTCAAACAG
TTACTCGAAAACAAAGCCTAAAGGGCTTGATAAAGTTTATGGAAAAAGAA
CTACTACTAACTCGAAAaccaaatctttgaaaaaagatgaagacatgctt
gaaagaaaaatgttagatgatttattttttgcatgaagttgagaaattta
caaattattaaaatttgaattttctcgATTTTAGGACTTTCAACTTTTGG
AAATTATTCTCATTCGTTTTATTtaagccccgggggggggggtactaggg
ctgCAAGCTGACGGggatgccgcccgactttcgaactgtGGACCCTTACC
ggaaataaaaaagagaaaacaaaggaaaattttgggaattttacgaccct
ttgtcccgcaaatttgaccaattttgaccaaatttcgatctttcaggggg
taaaaagtttaagttttcctatttttctgacccttagtggggctgaaatt
tgattttctgatttttccgacccctAGCCGGACTTTAAAAGTCCAGAAAA
GGTACCGTatcctccatttgcctaagtaccccccacACCCCGATTTAAGC
GTACAAATTTAGAtaggtttttttaagaaacacacttttaagaaacatga
ggctcagaatgcctaaaaactaagaaacatctaagaaacatgctaaggct
gagaatgagaaaataacatttttcaatttgttttttaagaaccttccaat
ccagccttccatgaggctgattatgtcaagaagtttagaaacatgtaaga
aacatttaaggctcaaaaggccgatttcttaagaaacatttagGCTGCTT
ATTAGTagaactagtttcttaaaaaaaacaatgtgtatttAAAAACTTGC
ACGCTCGGGCTGAATTTTCCGAATAccattttgaaaacttaacaAATTCA
GACATTCTAAAGGGGAATCATTTTGGATTAAGATTTTGGACTCCTTGGTT
TAAAATTTACTGGGATATTGAATTTAATCTCTTGCTATCCCTTTTCCAAA
CGATAAATCTTCTGAGAG Coding sequence (CDS) from alignment at sc0000410:210483..213050 >TCONS_00022290 ID=TCONS_00022290|Name=TCONS_00022290|organism=Clytia hemisphaerica|type=CDS|length=1686bp|location=Sequence derived from alignment at sc0000410:210483..213050 (Clytia hemisphaerica)
attttagagattttagacttaagaattttttcttctaatcaaaatgattt
atacatgtttgttaactttttgatttcagtagtgaaaacagaaaaagaaa
tagaaatgaagaaaatagaTCCCGTGAAGATTTATTGGGAAGATTTTCCA
CAGAACTCAGATCAATTTCGTAATGTGCTGGATCCAACCAAATTTCAAGA
ACCAAGTAAGATTTTGAATTCAACTGAAGTTACAGCACGACCAAAACCGT
GGCTTGCAAAGAATGTTCCAAGATCCAAAGTTAAGACTGTCAATGCAAAA
GAGAAAGAGATTCCAGATGTCAATGTCATGATTGCTAaccaaaataaatc
aaaagttccagaaaagaaagaaagtgtGGCATCATTTACCTCCCCAAAGG
TATACACCAGGTCTGTTGGTATTAAGGACCTCAATTCAGAggacaaacaa
aaaataacaaagctCATTCAAGAACTTGCTAAATTTGGAAGTGAAAAACA
AAAGGCTGTCAAAGAATTAAATGACGTGAAAGAAAATTATAGTTCTTTGA
AAATGCAACTTCAGCGTGAGAAAGAAGAAGCTATCCATCAACACAATTTA
ATGAAAGATAAACTGACAGAATATCAAATACTGGTGGAGGAAATGAAATC
AAACCAACAAAATGCACAAAGTATTATGGATCTTGATGCTAAATCTGAAA
CCAGTCTGATTGACAACTTTTCAGACCTTTTCCTAGAGcaagaaaagaag
tttgaacGCCAACAAAATATCTTACAAGAGCAAATTGAACAGCTTCAAAA
ACTACAAGAATCTGTCATCAAACAACAAACTGAAAAAACTCCAAAGAAGC
CTACTGTTGGTTTGAATAGCAAAAAACTTGAATCTTACCTTCAACAATCA
GCATCTAAACACACAAATAGCACCCTCGCTGATTTATCCATGCAAACTGA
AAGCCACGACCTAAAGGGAAACAAAGCTGAACTCGTTAAAAACAGTCCTA
AATCAACTCAACTTGAAACATACAACAATGAACAGACTAAAAAGATAAAA
CAACCAGTGAAGCATACTGTGGATATGGAAGTACAAACCGAGACACCTCG
AGAACCTACTTTGAAAGATTCACCATTAGTTATAAAATCAAGCTACAGAC
ATCAAAACAAAGCTTTTTCAAGTCAGATGAAATGCTCTTCCTCTAGAGAT
GCAAGAATGTTAGAAGAACGTAGTACCAAAGAGAAGTTTGACGTTGACTC
GAAACCAACAAGGCAAGGTACTTCAAATAGATCATTGAAAGCGTATAAAA
GGACATCAGTACACTCGAGCCCACCACCACAAAAGAGTGTTTGTTTTTCG
AAATCAACAACATCAGATGAAGATGCTGAACATGAGGAAATGATCCTGGT
GTCACCTCTTCAACGTAAACATTTCAAACCCTCATCTATGTTAGAGTTAA
TTGAAGGAATACAGCCTCGGTCCACAAGTACATCTGTCGATCAATACAGC
ATGAAACGAAGTAGTTCTCTCAAGTCAAGGTCTACCACATCTTCAAACAG
TTACTCGAAAACAAAGCCTAAAGGGCTTGATAAAGTTTATGGAAAAAGAA
CTACTACTAACTCGAAAaccaaatctttgaaaaaagatgaagacatgctt
gaaagaaaaatgttagatgatttattttttgcatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022290-exon-sc0000410-1491911889:210483..213050 | TCONS_00022290-exon-sc0000410-1491911889:210483..213050 | Clytia hemisphaerica | exon |
| TCONS_00022290-exon-sc0000410-1510915933:210483..213050 | TCONS_00022290-exon-sc0000410-1510915933:210483..213050 | Clytia hemisphaerica | exon |
| TCONS_00022290-exon-sc0000410-1575043694:210483..213050 | TCONS_00022290-exon-sc0000410-1575043694:210483..213050 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:210483..213050 . |
Blast
The following BLAST results are available for this feature:
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