TCONS_00022272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022272
Unique NameTCONS_00022272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022272 ID=TCONS_00022272|Name=TCONS_00022272|organism=Clytia hemisphaerica|type=transcript|length=369bp
ATTTCCCAGAAAATGAAGGACTATATGGGTATGAAATCCCAACTTTGTCT
CCGGTCATCTCTGTTTTCGGAGttcaatgaaaacaataaaacaatcGCAC
CCCTCGAACCAAAACACAACTGCTGTTCGAATTGTTCCATTACTTGTGAT
TGTGAGGAATGTCCTACATATGCTTATgagGTTAAAGGTGATCCGAAAAC
TACCCCACAAGAAGAGATTCAATTGTTTCGTGTTGTTTCAACTGAACAAA
GACAAATGGTAAGAGAGTTATTGGAAGGTTATGTCGAAAGTGTTTCGATT
GGACTATGTATACCGCCTGCCATTGCTGCTGGGCTAACACCTGAAATGAT
TAGCAAAATTGCTAAGAAT
Run BLAST on NCBI

protein sequence of TCONS_00022272-protein

>TCONS_00022272-protein ID=TCONS_00022272-protein|Name=TCONS_00022272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
ISQKMKDYMGMKSQLCLRSSLFSEFNENNKTIAPLEPKHNCCSNCSITCD
CEECPTYAYEVKGDPKTTPQEEIQLFRVVSTEQRQMVRELLEGYVESVSI
GLCIPPAIAAGLTPEMISKIAKN
Run BLAST on NCBI

transcript from alignment at sc0000410:31260..31880-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022272 ID=TCONS_00022272|Name=TCONS_00022272|organism=Clytia hemisphaerica|type=transcript|length=621bp|location=Sequence derived from alignment at sc0000410:31260..31880- (Clytia hemisphaerica)
ATTTCCCAGAAAATGAAGGACTATATGGGTATGAAATCCCAACTTTGTCT
CCGGTCATCTCTGTTTTCGGAGTTCAATGAAAACAATAAAACAATCGCAC
CCCTCGAACCAAAACACAACTGCTGTTCGAATTGTTCCATTACTTGTGAT
TGTGAGGAATGTCCTACATATGCTTATGAGGTATTTTTTATTTATTCTAC
TTCATAATTGTTACGTCATAGAATCTTTATAATAGGTTCTGTGAAAACAG
GTTTTATAATAGGTTCTGTGAAAACAGGTTTTTAATTTTATCATTAAACA
AAGATAAAGCTCTATAGTTTAACAAACATTCGAACCTAATAAATTTGAAA
GACTAGAAGTGTGGACGAGCTATGAAGCGAAAAATGAATAGAGTTGTTTA
TATTTTAAAGAGGCTCACTTATTTTCCTTCAGGTTAAAGGTGATCCGAAA
ACTACCCCACAAGAAGAGATTCAATTGTTTCGTGTTGTTTCAACTGAACA
AAGACAAATGGTAAGAGAGTTATTGGAAGGTTATGTCGAAAGTGTTTCGA
TTGGACTATGTATACCGCCTGCCATTGCTGCTGGGCTAACACCTGAAATG
ATTAGCAAAATTGCTAAGAAT

Coding sequence (CDS) from alignment at sc0000410:31260..31880-

>TCONS_00022272 ID=TCONS_00022272|Name=TCONS_00022272|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0000410:31260..31880- (Clytia hemisphaerica)
GTTAAAGGTGATCCGAAAACTACCCCACAAGAAGAGATTCAATTGTTTCG
TGTTGTTTCAACTGAACAAAGACAAATGGTAAGAGAGTTATTGGAAGGTT
ATGTCGAAAGTGTTTCGATTGGACTATGTATACCGCCTGCCATTGCTGCT
GGGCTAACACCTGAAATGATTAGCAAAATTGCTAAGAATATTTCCCAGAA
AATGAAGGACTATATGGGTATGAAATCCCAACTTTGTCTCCGGTCATCTC
TGTTTTCGGAGTTCAATGAAAACAATAAAACAATCGCACCCCTCGAACCA
AAACACAACTGCTGTTCGAATTGTTCCATTACTTGTGATTGTGAGGAATG
TCCTACATATGCTTATGAGGTTAAAGGTGATCCGAAAACTACCCCACAAG
AAGAGATTCAATTGTTTCGTGTTGTTTCAACTGAACAAAGACAAATGGTA
AGAGAGTTATTGGAAGGTTATGTCGAAAGTGTTTCGATTGGACTATGTAT
ACCGCCTGCCATTGCTGCTGGGCTAACACCTGAAATGATTAGCAAAATTG
CTAAGAATATTTCCCAGAAAATGAAGGACTATATGGGTATGAAATCCCAA
CTTTGTCTCCGGTCATCTCTGTTTTCGGAGTTCAATGAAAACAATAAAAC
AATCGCACCCCTCGAACCAAAACACAACTGCTGTTCGAATTGTTCCATTA
CTTGTGATTGTGAGGAATGTCCTACATATGCTTATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012489XLOC_012489Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022272-proteinTCONS_00022272-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022272-exon-sc0000410-1575043694:31701..31880TCONS_00022272-exon-sc0000410-1575043694:31701..31880Clytia hemisphaericaexon
TCONS_00022272-exon-sc0000410-1575043694:31260..31448TCONS_00022272-exon-sc0000410-1575043694:31260..31448Clytia hemisphaericaexon
TCONS_00022272-exon-sc0000410-1510915933:31701..31880TCONS_00022272-exon-sc0000410-1510915933:31701..31880Clytia hemisphaericaexon
TCONS_00022272-exon-sc0000410-1510915933:31260..31448TCONS_00022272-exon-sc0000410-1510915933:31260..31448Clytia hemisphaericaexon
TCONS_00022272-exon-sc0000410-1491911889:31701..31880TCONS_00022272-exon-sc0000410-1491911889:31701..31880Clytia hemisphaericaexon
TCONS_00022272-exon-sc0000410-1491911889:31260..31448TCONS_00022272-exon-sc0000410-1491911889:31260..31448Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:31260..31880 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.299023	0.236292	0	0.266885	0	0	0	0	0.14747	0.459446	0	0	0	0	0	0	0	0	0	0	1.66648	0	0	0	0.24611	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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