TCONS_00022251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022251
Unique NameTCONS_00022251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022251 ID=TCONS_00022251|Name=TCONS_00022251|organism=Clytia hemisphaerica|type=transcript|length=672bp
AGAGAAATCATCCCTATGCAAGATTGCAAAGCTTTTCTACAGGCAGGATA
CTCAAAGAATGGATTGTATCGTCTTGAAAGTCCACATTTCAACCAACTAT
CTGTGTACTGTGACCAGACAACCGAAGGAGGTGGCTGGACAGTTCTGATG
CGCCGGATGGATGGATCCCTTGATTTCGCACGCAACTGGCACTACTACAA
AATGGGTTTCGGTCGACTGGAAGGTGAATTTTGGCTTGGTAATGAAAACT
TTCATGAtttaacaaaacctttaaaagctCCTAGAAAATCCCAACTTCTG
ATCGACATGAGGATTTTTGGAAAACCCAATACTCCAGTTCACGCCATCTA
CGATTCATTTGAAGTTGGAAGCGAAGCAACGAAATACCAATTGAAACTAT
CTGGCGCCACTGGCAATGTGTCAAACCCTGGTATTTTTGGATCTTATCAT
AACAATATGAAGTTCTCAACTTTTGATGTTGATAATGATACGAAAGGGAA
TTCATGTTCTGTTGTCGGTCACGGCAAAGTTGGATGGTGGTTCAAATCAT
GTGATACGACACTCTTTACAGGTGCTTACTCCTTTACAAAGAAGGAAGGT
GAAATTGTTTGGCATTATCCAAATGTTCAACCCACTTATGTTGAAATGAA
AGTTCGCCGAAagtaaaatgtg
Run BLAST on NCBI

protein sequence of TCONS_00022251-protein

>TCONS_00022251-protein ID=TCONS_00022251-protein|Name=TCONS_00022251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
REIIPMQDCKAFLQAGYSKNGLYRLESPHFNQLSVYCDQTTEGGGWTVLM
RRMDGSLDFARNWHYYKMGFGRLEGEFWLGNENFHDLTKPLKAPRKSQLL
IDMRIFGKPNTPVHAIYDSFEVGSEATKYQLKLSGATGNVSNPGIFGSYH
NNMKFSTFDVDNDTKGNSCSVVGHGKVGWWFKSCDTTLFTGAYSFTKKEG
EIVWHYPNVQPTYVEMKVRRK
Run BLAST on NCBI

transcript from alignment at sc0000408:68188..68859

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022251 ID=TCONS_00022251|Name=TCONS_00022251|organism=Clytia hemisphaerica|type=transcript|length=672bp|location=Sequence derived from alignment at sc0000408:68188..68859 (Clytia hemisphaerica)
cacattttactTTCGGCGAACTTTCATTTCAACATAAGTGGGTTGAACAT
TTGGATAATGCCAAACAATTTCACCTTCCTTCTTTGTAAAGGAGTAAGCA
CCTGTAAAGAGTGTCGTATCACATGATTTGAACCACCATCCAACTTTGCC
GTGACCGACAACAGAACATGAATTCCCTTTCGTATCATTATCAACATCAA
AAGTTGAGAACTTCATATTGTTATGATAAGATCCAAAAATACCAGGGTTT
GACACATTGCCAGTGGCGCCAGATAGTTTCAATTGGTATTTCGTTGCTTC
GCTTCCAACTTCAAATGAATCGTAGATGGCGTGAACTGGAGTATTGGGTT
TTCCAAAAATCCTCATGTCGATCAGAAGTTGGGATTTTCTAGGagctttt
aaaggttttgttaaaTCATGAAAGTTTTCATTACCAAGCCAAAATTCACC
TTCCAGTCGACCGAAACCCATTTTGTAGTAGTGCCAGTTGCGTGCGAAAT
CAAGGGATCCATCCATCCGGCGCATCAGAACTGTCCAGCCACCTCCTTCG
GTTGTCTGGTCACAGTACACAGATAGTTGGTTGAAATGTGGACTTTCAAG
ACGATACAATCCATTCTTTGAGTATCCTGCCTGTAGAAAAGCTTTGCAAT
CTTGCATAGGGATGATTTCTCT

Coding sequence (CDS) from alignment at sc0000408:68188..68859

>TCONS_00022251 ID=TCONS_00022251|Name=TCONS_00022251|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000408:68188..68859 (Clytia hemisphaerica)
ttactTTCGGCGAACTTTCATTTCAACATAAGTGGGTTGAACATTTGGAT
AATGCCAAACAATTTCACCTTCCTTCTTTGTAAAGGAGTAAGCACCTGTA
AAGAGTGTCGTATCACATGATTTGAACCACCATCCAACTTTGCCGTGACC
GACAACAGAACATGAATTCCCTTTCGTATCATTATCAACATCAAAAGTTG
AGAACTTCATATTGTTATGATAAGATCCAAAAATACCAGGGTTTGACACA
TTGCCAGTGGCGCCAGATAGTTTCAATTGGTATTTCGTTGCTTCGCTTCC
AACTTCAAATGAATCGTAGATGGCGTGAACTGGAGTATTGGGTTTTCCAA
AAATCCTCATGTCGATCAGAAGTTGGGATTTTCTAGGagcttttaaaggt
tttgttaaaTCATGAAAGTTTTCATTACCAAGCCAAAATTCACCTTCCAG
TCGACCGAAACCCATTTTGTAGTAGTGCCAGTTGCGTGCGAAATCAAGGG
ATCCATCCATCCGGCGCATCAGAACTGTCCAGCCACCTCCTTCGGTTGTC
TGGTCACAGTACACAGATAGTTGGTTGAAATGTGGACTTTCAAGACGATA
CAATCCATTCTTTGAGTATCCTGCCTGTAGAAAAGCTTTGCAATCTTGCA
TAGGGATGATTTCTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012471XLOC_012471Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022251-exon-sc0000408-1491911889:68188..68859TCONS_00022251-exon-sc0000408-1491911889:68188..68859Clytia hemisphaericaexon
TCONS_00022251-exon-sc0000408-1510915933:68188..68859TCONS_00022251-exon-sc0000408-1510915933:68188..68859Clytia hemisphaericaexon
TCONS_00022251-exon-sc0000408-1575043694:68188..68859TCONS_00022251-exon-sc0000408-1575043694:68188..68859Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022251-proteinTCONS_00022251-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000408supercontigsc0000408:68188..68859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.229877	0.149444	0.694077	0.424404	0.103334	0.081656	1.57623	1.47565	50.3009	22.7148	53.0228	60.9837	33.5326	31.7014	41.9878	45.6663	10.0089	16.0368	7.33094	10.1432	0.148172	0.10841	0	0	0.164539	0.146848	0	0.112133	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00022251 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 7.876e-38
Identity = 80/193 (41.45%), Postives = 102/193 (52.85%), Query Frame = 1 
Query:   19 QDCKAFLQAGYSKNGLYRLESPHFNQLSVYCDQTTEGGGWTVLMRRMDGSLDFARNWHYYKMGFGRLEGEFWLGNENFHDLTKPLKAPRKSQLLIDMRIFGKPNTPVHAIYDSFEVGSEATKYQLKLSGATGNVSNPGIFGSYHNNMKFSTFDVDNDTKGNSCSVVGHGKVGWWFKSCDTTLFTGAYSFTKKE 597
            ++CK  L  GY  +G + +  P    L+V CD  T+GGGWTV  RRMDGS+DF R+W  YK GFG   GEFWLGN+N H LT    A   S+L +D+  F        A Y SF+V  EA KY+L L    G  +   + G  HNN  FST D DND   ++C+    G   WW+  C  +   G Y     E
Sbjct:  116 RNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALT----AQGSSELRVDLVDF--EGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTG--HNNNFFSTKDQDNDVSSSNCAEKFQGA--WWYADCHASNLNGLYLMGPHE 298
The following BLAST results are available for this feature:
BLAST of TCONS_00022251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN17.876e-3841.45Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2[more]
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