|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022167 ID=TCONS_00022167|Name=TCONS_00022167|organism=Clytia hemisphaerica|type=transcript|length=1489bpRun BLAST on NCBI transcript from alignment at sc0000406:86195..101102- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022167 ID=TCONS_00022167|Name=TCONS_00022167|organism=Clytia hemisphaerica|type=transcript|length=14908bp|location=Sequence derived from alignment at sc0000406:86195..101102- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00022167 vs. Swiss-Prot (Human)
Match: MALT1 (Mucosa-associated lymphoid tissue lymphoma translocation protein 1 OS=Homo sapiens GN=MALT1 PE=1 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 3.099e-36 Identity = 123/406 (30.30%), Postives = 186/406 (45.81%), Query Frame = 1
Query: 73 QAGPTAFATGKFALVIANQNYISPRYPNEVLVHPHDDATLLENSLEEIGFKVIRLFDLTKREMETALEGFCKILKSAKGLYSLFYFCGHGFEEAGKTFLMPVDVDTQWTAESAISAEYVLSKIQHCRTTKLDVMLLDVCRVRLDNDTLGQSNTSSYEPPFIPGKQCVFGYATCPQSMAFEKRSD--KNGLYMKHLAAHLRERIQIENLLHLVGAAVKKEADMHHLTRG-MSPSIKSTTTEIFTLTDPIMPIDFECDP---TNEWFNIHRLPAHKVLTLKDGIVIDIKFSPVSSNVCCIIIHVV-NFGKAHWCDANIIELSNAEIQVPYNSMNQEHP-------VSSEFLSKCVSFNNQSAVQRSSEFEKLTQVSALQKLTGPIALTIQVKYYKENRDDVKTITEKH 1248
Q A K AL+I N NY +P L P D L N L ++ FKV+ L DLT+ EM A++ F +L KG+Y L Y+ GHG+E G +F++PVD + +E+ + + +L +Q + T L+V LLD+CR R D D +T VFGYATC + AFE + NG++MK L L E +I LL V + K HLT+G + I+S+ +E LTDPI ++ + +W H LP L G+ I + F+ SNV I +V + CDA + + ++ + N+ P VS + C+ T++S+LQKL + T+ + Y +D T+ +K
Sbjct: 333 QTTDQPLAKDKVALLIGNMNYR--EHPK--LKAPLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLD--KGVYGLLYYAGHGYENFGNSFMVPVDAPNPYRSENCLCVQNILKLMQE-KETGLNVFLLDMCRKRNDYD-----DTIPILDALKVTANIVFGYATCQGAEAFEIQHSGLANGIFMKFLKDRLLEDKKITVLLDEVAEDMGK----CHLTKGKQALEIRSSLSEKRALTDPIQGTEYSAESLVRNLQWAKAHELPESMCLKFDCGVQIQLGFAAEFSNVMIIYTSIVYKPPEIIMCDAYVTDFP-LDLDIDPKDANKGTPEETGSYLVSKDLPKHCL----------------YTRLSSLQKLKEHLVFTVCLSYQYSGLED--TVEDKQ 703 The following BLAST results are available for this feature:
BLAST of TCONS_00022167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.