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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021576 ID=TCONS_00021576|Name=TCONS_00021576|organism=Clytia hemisphaerica|type=transcript|length=978bp
AAAATGTTATGCCTTTTGTAAGAGTGCGCTGCGTGGTAAAATCAGGTGAA
AGAGAAACTTGTCTGTTTTTGTGGTTTTATCTGATTGCAAAACATTTGGT
TGATTCTCATACGAGTATCTTTTGGTGCTTGTGAAGAGATGAGAGTGCCA
AACAAGGAAGATTGGCTTTCTATATTTGCTGTGATATTCAGTGAACTAGA
GCAAATGTTACTTCCCGCGTCCTCAGATCATTCCTTCGACGCCCATTCAT
CACTCAAATATGATACCAAAGGGAAACGTCGGAATTGGTGAAATCAAAGT
ACTTACTTTCGGCCAACAATGTCAGAATTGTGAGAGAAGTTCGAGAAGCT
CCTCTCGTGGACGAGGCGGTGCTAGATCGATACCACAAAGAAATCCTTTT
TACGCTGCAAAGTTTGCACTAGATTCAATCGACGATATTTTACGCCGTTT
GCTttcaaaagtgaaagtaaagtTTTATGGGGCAGAGCAAGAAGATTACC
ACTCACACAAGAAAGGCTTTGAGGCGAAGGCTCCTCACAACAGTGCGTTA
TGTCAAGCCTGCATGTTGCAAAGATGTTCTCATACAGAAGGAGTCAATTC
AAGACGTCGTCATGGTACAGGCTACCACAATGTTGTCCATTCCCGAAGAA
ATTTGAATTCGAGATACATCAAATGGTATCTGGTATTTGACGAATGAAAA
TACTTTTTGAGTCGATTCTTATGAAACAGCCAATTAACTTTCTTGGTAGC
GTTtctatattttgttttgatgtctcTCAGCTGGTAAACATCATCGACCT
CTCAATTGGGCGTGTCTTctttatatactttttattttttacttcagGGC
TCTGGCCATAGTCAGAAATTTGGTTAGGTAATTTTATTTCAGGTTCCTTg
acattttaacaaaaaactgcTCTATACAAGTTATTTGTTGATTTATTCCG
TTAAGAGTTACCCTgggtatcagaggtt Run BLAST on NCBI protein sequence of TCONS_00021576-protein >TCONS_00021576-protein ID=TCONS_00021576-protein|Name=TCONS_00021576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MIPKGNVGIGEIKVLTFGQQCQNCERSSRSSSRGRGGARSIPQRNPFYAA
KFALDSIDDILRRLLSKVKVKFYGAEQEDYHSHKKGFEAKAPHNSALCQA
CMLQRCSHTEGVNSRRRHGTGYHNVVHSRRNLNSRYIKWYLVFDE Run BLAST on NCBI transcript from alignment at sc0000390:104562..105801+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00021576 ID=TCONS_00021576|Name=TCONS_00021576|organism=Clytia hemisphaerica|type=transcript|length=1240bp|location=Sequence derived from alignment at sc0000390:104562..105801+ (Clytia hemisphaerica)
AAAATGTTATGCCTTTTGTAAGAGTGCGCTGCGTGGTAAAATCAGGTGAA
AGAGAAACTTGTCTGTTTTTGTGGTTTTATCTGATTGCAAAACATTTGGT
TGATTCTCATACGGTGAGTATCTTCCTTCGTTTACAACTGTTCCCAATAC
CATCTTATCTTATCAGGTATGATTTAATTTGCGTGGAAGATTTCCAAATG
AGGTCAAAGGTCACAGTCTCTCACAAGTTGTGATACTGACAGAAATTATT
CGAAATTATGTGTGTCCTTTTTACAGCATTATTAAGTCCACTCTTTTATC
TGAATACCAATGTCGCAAGGTTCCATTTCTTTTATTGATGAAGGTTAAat
taatgacaacttttcgcCTTTCTAGAGTATCTTTTGGTGCTTGTGAAGAG
ATGAGAGTGCCAAACAAGGAAGATTGGCTTTCTATATTTGCTGTGATATT
CAGTGAACTAGAGCAAATGTTACTTCCCGCGTCCTCAGATCATTCCTTCG
ACGCCCATTCATCACTCAAATATGATACCAAAGGGAAACGTCGGAATTGG
TGAAATCAAAGTACTTACTTTCGGCCAACAATGTCAGAATTGTGAGAGAA
GTTCGAGAAGCTCCTCTCGTGGACGAGGCGGTGCTAGATCGATACCACAA
AGAAATCCTTTTTACGCTGCAAAGTTTGCACTAGATTCAATCGACGATAT
TTTACGCCGTTTGCTttcaaaagtgaaagtaaagtTTTATGGGGCAGAGC
AAGAAGATTACCACTCACACAAGAAAGGCTTTGAGGCGAAGGCTCCTCAC
AACAGTGCGTTATGTCAAGCCTGCATGTTGCAAAGATGTTCTCATACAGA
AGGAGTCAATTCAAGACGTCGTCATGGTACAGGCTACCACAATGTTGTCC
ATTCCCGAAGAAATTTGAATTCGAGATACATCAAATGGTATCTGGTATTT
GACGAATGAAAATACTTTTTGAGTCGATTCTTATGAAACAGCCAATTAAC
TTTCTTGGTAGCGTTtctatattttgttttgatgtctcTCAGCTGGTAAA
CATCATCGACCTCTCAATTGGGCGTGTCTTctttatatactttttatttt
ttacttcagGGCTCTGGCCATAGTCAGAAATTTGGTTAGGTAATTTTATT
TCAGGTTCCTTgacattttaacaaaaaactgcTCTATACAAGTTATTTGT
TGATTTATTCCGTTAAGAGTTACCCTgggtatcagaggtt Coding sequence (CDS) from alignment at sc0000390:104562..105801+ >TCONS_00021576 ID=TCONS_00021576|Name=TCONS_00021576|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0000390:104562..105801+ (Clytia hemisphaerica)
ATGATACCAAAGGGAAACGTCGGAATTGGTGAAATCAAAGTACTTACTTT
CGGCCAACAATGTCAGAATTGTGAGAGAAGTTCGAGAAGCTCCTCTCGTG
GACGAGGCGGTGCTAGATCGATACCACAAAGAAATCCTTTTTACGCTGCA
AAGTTTGCACTAGATTCAATCGACGATATTTTACGCCGTTTGCTttcaaa
agtgaaagtaaagtTTTATGGGGCAGAGCAAGAAGATTACCACTCACACA
AGAAAGGCTTTGAGGCGAAGGCTCCTCACAACAGTGCGTTATGTCAAGCC
TGCATGTTGCAAAGATGTTCTCATACAGAAGGAGTCAATTCAAGACGTCG
TCATGGTACAGGCTACCACAATGTTGTCCATTCCCGAAGAAATTTGAATT
CGAGATACATCAAATGGTATCTGGTATTTGACGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00021576-exon-sc0000390-1491911889:104562..104674 | TCONS_00021576-exon-sc0000390-1491911889:104562..104674 | Clytia hemisphaerica | exon |
| TCONS_00021576-exon-sc0000390-1510915933:104562..104674 | TCONS_00021576-exon-sc0000390-1510915933:104562..104674 | Clytia hemisphaerica | exon |
| TCONS_00021576-exon-sc0000390-1575043694:104562..104674 | TCONS_00021576-exon-sc0000390-1575043694:104562..104674 | Clytia hemisphaerica | exon |
| TCONS_00021576-exon-sc0000390-1491911889:104937..105801 | TCONS_00021576-exon-sc0000390-1491911889:104937..105801 | Clytia hemisphaerica | exon |
| TCONS_00021576-exon-sc0000390-1510915933:104937..105801 | TCONS_00021576-exon-sc0000390-1510915933:104937..105801 | Clytia hemisphaerica | exon |
| TCONS_00021576-exon-sc0000390-1575043694:104937..105801 | TCONS_00021576-exon-sc0000390-1575043694:104937..105801 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000390 | supercontig | sc0000390:104562..105801 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027377 | Znf-3CxxC |
Blast
The following BLAST results are available for this feature:
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