TCONS_00021621 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021621
Unique NameTCONS_00021621
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length333

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021621 ID=TCONS_00021621|Name=TCONS_00021621|organism=Clytia hemisphaerica|type=transcript|length=333bp
aaatttaagaaataccCGACGCACCGGTCATGTCCGACACCGGATATCCA
ACTTCCTTAAGTctggtgtagagattgtccggtggtaaaaaaaaattctc
attttacaccggactttcgcgtgtccggtgttcgttaggTCCGGTGTGTC
GACAGGGTCCTAAATCATTGAGATCTCGAGGGCAGAAATTACTCACTTTT
AAGGGCAGgggcaaaattttgataatatctaCAGTTCAGGgtcaaaatca
ttgaaaactgGCTATATTTATATACATGTTTTTCTAGCTTTTTTTGTGGT
GGGAAACAGAtcttaagataaaatattttgcag
Run BLAST on NCBI

transcript from alignment at sc0000390:34433..34765

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021621 ID=TCONS_00021621|Name=TCONS_00021621|organism=Clytia hemisphaerica|type=transcript|length=333bp|location=Sequence derived from alignment at sc0000390:34433..34765 (Clytia hemisphaerica)
ctgcaaaatattttatcttaagaTCTGTTTCCCACCACAAAAAAAGCTAG
AAAAACATGTATATAAATATAGCcagttttcaatgattttgacCCTGAAC
TGtagatattatcaaaattttgcccCTGCCCTTAAAAGTGAGTAATTTCT
GCCCTCGAGATCTCAATGATTTAGGACCCTGTCGACACACCGGAcctaac
gaacaccggacacgcgaaagtccggtgtaaaatgagaatttttttttacc
accggacaatctctacaccagACTTAAGGAAGTTGGATATCCGGTGTCGG
ACATGACCGGTGCGTCGggtatttcttaaattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012118XLOC_012118Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021621-exon-sc0000390-1491911889:34433..34765TCONS_00021621-exon-sc0000390-1491911889:34433..34765Clytia hemisphaericaexon
TCONS_00021621-exon-sc0000390-1510915933:34433..34765TCONS_00021621-exon-sc0000390-1510915933:34433..34765Clytia hemisphaericaexon
TCONS_00021621-exon-sc0000390-1575043694:34433..34765TCONS_00021621-exon-sc0000390-1575043694:34433..34765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000390supercontigsc0000390:34433..34765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.927765	0.302844	1.96013	0	0	0.32228	1.12992	0.385621	0.583648	0.305575	2.6105	1.10925	1.62759	1.84622	0	0.2052	0.230244	0.486018	0	0.366625	0.283494	0	0	0	1.4544	1.08209	0	0	0	0.347352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021621 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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