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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00021541 ID=TCONS_00021541|Name=TCONS_00021541|organism=Clytia hemisphaerica|type=transcript|length=4047bpRun BLAST on NCBI protein sequence of TCONS_00021541-protein >TCONS_00021541-protein ID=TCONS_00021541-protein|Name=TCONS_00021541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1335bp MRMTMRFILWTWLLCLLNIFFVTCDNGKVTSISPNVGSVRGNLPVTIKGERun BLAST on NCBI transcript from alignment at sc0000389:260860..289674+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00021541 ID=TCONS_00021541|Name=TCONS_00021541|organism=Clytia hemisphaerica|type=transcript|length=28815bp|location=Sequence derived from alignment at sc0000389:260860..289674+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000389:260860..289674+ >TCONS_00021541 ID=TCONS_00021541|Name=TCONS_00021541|organism=Clytia hemisphaerica|type=CDS|length=108135bp|location=Sequence derived from alignment at sc0000389:260860..289674+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00021541 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 193.356 bits (490), Expect = 2.507e-49 Identity = 189/805 (23.48%), Postives = 355/805 (44.10%), Query Frame = 2
Query: 1679 TKKEELQAMIDDVTGIKCTYSI-NVDGGY---FFQDFEAPDPRNEI--GTRTSERPSTCGRKSLRFYKNSWHNLFHLGRSYLRNGTVLGPYRLQDHHYFCFSHRGDAKVSYVQLQVDYGNTENADRRHDNVRISDSSVHNE--HKCFNIYDAVTTSWLVT--SNRKLDVTK---------DIL-------IRHLXXXXXXXXXXXXXDNVWIGNEELRITRTTEPDFDWSKTVTVSDDLAISLHAQDCMVNIPRLEIHNWAKSTVGANIDQFTSNGHS------IIVNQTKELPGPATGSFDLKFTDRNEKEIFIRDIPVNITSDQLRARLEGALEDSAGTLAVTNLGDCHGLIWYVTFKSIGGDLPQFEVV-SKSEDLQTDVVVKTMQDGGIVHGPFTGDLLQQKMDKPQVTVDLFGLMSTCSNGSCAYNYTTEKTPNITAITPQ--SAAPGEQITLTSQDFVGQTVTKVTVGNIDCSIDSTSGENVVCTIGEETRGGQQDVIAHVQGMGNAYPIK-----FEVAIVITSISPSTLGTNGGVDIEINGKGFGADGKGLEIQLKMGSDRHDCNIHCYLKDCGPTRTYCRTPVLVDGSAELEASINGSTYTYPHVITVGIGSDPIVNTISFQKASVKGGQKLSIAGSSF----SEDSKVNVDTKECTIVTASTSHIECTLPENEPGVKKCAV-VRSDGFSS----IEFDMEYVLSLTSISPNKGSYAGGSILTITGEGFGTVDSDVEVRVGQKKCEIMTISDTTITCRQPPVTRTVQVGNSGQHETFGIGYKWSKENINILTGDTV 3946
+ + E Q ++++ KC I N + G+ +F+D+E I G +T+E + CGR SL KN + N G L ++ C +++G +Y+ L+ Y + R D + + N + C ++ D V T + T S +++ + K D++ I L +++ + ++ T+T P T+++ ++++ + +C NIP + + ++ + ++F G++ I + + + P +GSFD++ ++ +P +++ L+ L+ + G ++VT G C G W + ++S G ++ S + ++ V +++GG+ GDLL+ +PQV V + G+ + CS G C + + + TP + AI+P S G +T+ F + V+VG + CS+ S + + C I + G V + +G A + F I+ I P + GG + ++G GF + K L +G++ C + + R CRTP +G+ ++ + NG T + PI+ S + ++ G L+I G +F +++ V V K C I+ + + I C LP+ PG V VR+ GF+S + ++YVL +TS+ P +GS GG+ +TI G GF T+ ++ V +G C + + S+ I C ++ N+G+ G+GY WS +N+ GDTV
Sbjct: 653 SSEAEFQGAVEEMVSTKCPPQIANFEEGFVVKYFRDYETDFNLEHINRGQKTAETDAYCGRYSL---KNP--AVLFDSADVKPNRRPYGDILLFPYNQLCLAYKG-FLANYIGLKFQYQDNSKITRSTDTQFTYNFAYGNNWTYTCIDLLDLVRTKYTGTNVSLQRISLHKASESQSFYVDVVYIGHTSTISTLDEMPKRRLPALANKGIFLEHFQVNQTKTNGP--------TMTNQYSVTMTSYNCSYNIPMMAV-SFGQIITHETENEFVYRGNNWPGESKIHIQRIQAASPPLSGSFDIQAYGH-----ILKGLPAAVSAADLQFALQSL--EGMGRISVTREGTCAGYAWNIKWRSTCGKQNLLQINDSNIIGEKANMTVTRIKEGGLFRQHVLGDLLRTPSQQPQVEVYVNGIPAKCS-GDCGFTWDSNITPLVLAISPSQGSYEEGTILTIVGSGFSPSSAVTVSVGPVGCSLLSVDEKELKCQILNGS-AGHAPVAVSMADVGLAQNVGGEEFYFVYQSQISHIWPDSGSIAGGTLLTLSGFGFNENSKVL-----VGNET------CNVIEGDLNRITCRTPKKTEGTVDISVTTNGFQATARDAFSYNCLQTPIITDFSPKVRTILGEVNLTIKGYNFGNELTQNMAVYVGGKTCQILHWNFTDIRCLLPKLSPGKHDIYVEVRNWGFASTRDKLNSSIQYVLEVTSMFPQRGSLFGGTEITIRGFGFSTIPAENTVLLGSIPCNVTSSSENVIKCILHSTGNIFRITNNGKDSVHGLGYAWSPPVLNVSVGDTV 1422 HSP 2 Score: 142.124 bits (357), Expect = 1.198e-33 Identity = 153/541 (28.28%), Postives = 230/541 (42.51%), Query Frame = 2
Query: 47 MTMRFILWTWLLCLLNIFFVTCDNG--------KVTSISPNVGSVRGNLPVTIKGEGFS-TNQY-------EGKNEVFFIHRQTGSVLQCSVMDQATTDKQIKCETPRPPTKENQEYHVKVKVNGVWL--NNDEPKTFCGGTCNFHYQIKSTPILDNIFPAASLPGEVIRLEGTPFAWQISRLDPDGFDPDDPEIQKMYIGTGICNPFDSEDKKLLGTYRKEDNPSEGWIKCQTTVKTPGFWRASFIASN-VGRSAGSKRLEKIDNEGHIYHYQTYANVESISPDCGSIMGGTQLTITGKGFXXXXXXXXXXXXXXXECLIDEVTDTVIKCTTGEINPLNLERDSFPGPRGFQQELWTNCNVRHVDENFDERFK-PGASNYVSSVRTDKQELSSIYNNYDGRFDSLCAKFNGYFRPPYTGYFKLLINADDTGDFYFSDCESNCTDSDLRRVAYTTRYTHNFWTHVEKQQSEYIYLDREKSYRYVANFADNIGQYMFQLGLFGGKTSHTETELPEIARDEQQEIKVVSNAQPSEQILDLSNF 1609
M ++L W LC + D KVT I P GS+ G +TI+GEGFS NQ+ E N V I + + C V A+ QI C T P Y V+V V+GV + NN C F+ + TP + +I P + PG +I ++G F + + I ++YIG C + L G N G + C+TT G SFI N GRS K + + I +QTYA V I P GSI GGT LTI+G+ F V+V V G C I VT+ I C T P ++ + +PG RG + E+W N ++E + K PG Y+ + D + D+ A+F+G+ P + ++ I DD YFS D R+AY + +++++ Q+S+ I+L + K Y + +GL+ + +TE + + A +E+Q IK S Q++ L N+
Sbjct: 1 MGHLWLLGIWGLC--GLLLCAADPSTDGSQIIPKVTEIIPKYGSINGATRLTIRGEGFSQANQFNYGVDNAELGNSVQLI--SSFQSITCDVEKDASHSTQITCYTRAMP---EDSYTVRVSVDGVPVTENNTCKGHINSWECTFNAKSFRTPTIRSITPLSGTPGTLITIQGRIFTDVYGSNIALSSNGKNVRILRVYIGGMPCELLIPQSDNLYGLKLDHPNGDMGSMVCKTTGTFIGHHNVSFILDNDYGRSFPQKMAYFVSSLNKIAMFQTYAEVTMIFPSQGSIRGGTTLTISGR-FFDQTDFPVRVLVGGEPCDILNVTENSICCKTPP-KP-HILKTVYPGGRGLKLEVWNNSRPIRLEEILEYNEKTPG---YMGASWVDSASYIWLMEQ-----DTFVARFSGFLVAPDSDVYRFYIKGDDRYAIYFSQ---TGLPEDKVRIAYHSANANSYFSS-PTQRSDDIHLQKGKEYYIEILLQEYRLSAFVDVGLYQYRNVYTEQQTGD-AVNEEQVIKSQSTILQEVQVITLENW 518 The following BLAST results are available for this feature:
BLAST of TCONS_00021541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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