TCONS_00021240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021240
Unique NameTCONS_00021240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021240 ID=TCONS_00021240|Name=TCONS_00021240|organism=Clytia hemisphaerica|type=transcript|length=530bp
TCTATAAAAAgcgaattttcaaagaaaaaacatcagTTGCAAAAACACCA
TCAAAAAGACAATCAAGGTTGACAGCAGTAGTTCCCTGCCGTAAAAACGC
TTACCGTACCGACCCAAACCCgtcagaaaatgaaaatagcGATCTAAAGG
ACTCATTGAACCAAGAGAGGTCGTTTGTCATACCAAACTCCACAAAGTCG
GTTATTAGACGAAGAAGAAGGCAGTGCAGCAATTATCGATGAAAACGACC
AGTCAGATTCGACTTCTCAGGCTAATGATGTCGGTTGGAAACAATGGTTT
TGGAATGTGTTAAAAAGAGTTCGAGATGTGTTATATTCTTTTCTTTGTCT
ATGCCTTACTGTCAGTGAGTCTGGGGATAATGTAGGAGAAGGGACTCTAA
TGTTGGAGGAAGACAAAAGGACGATTACTGAAACAGAAGCACCTGTTAAT
AGCCTCTGGACCTAAACGGAATtttatataatataattttaattgCACTT
TAAATTTGTAAGATAAGAATAAAAACCCTG
Run BLAST on NCBI

transcript from alignment at sc0000379:240804..241333

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021240 ID=TCONS_00021240|Name=TCONS_00021240|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0000379:240804..241333 (Clytia hemisphaerica)
CAGGGTTTTTATTCTTATCTTACAAATTTAAAGTGcaattaaaattatat
tatataaaATTCCGTTTAGGTCCAGAGGCTATTAACAGGTGCTTCTGTTT
CAGTAATCGTCCTTTTGTCTTCCTCCAACATTAGAGTCCCTTCTCCTACA
TTATCCCCAGACTCACTGACAGTAAGGCATAGACAAAGAAAAGAATATAA
CACATCTCGAACTCTTTTTAACACATTCCAAAACCATTGTTTCCAACCGA
CATCATTAGCCTGAGAAGTCGAATCTGACTGGTCGTTTTCATCGATAATT
GCTGCACTGCCTTCTTCTTCGTCTAATAACCGACTTTGTGGAGTTTGGTA
TGACAAACGACCTCTCTTGGTTCAATGAGTCCTTTAGATCgctattttca
ttttctgacGGGTTTGGGTCGGTACGGTAAGCGTTTTTACGGCAGGGAAC
TACTGCTGTCAACCTTGATTGTCTTTTTGATGGTGTTTTTGCAActgatg
ttttttctttgaaaattcgcTTTTTATAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011887XLOC_011887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021240-exon-sc0000379-1491911889:240804..241333TCONS_00021240-exon-sc0000379-1491911889:240804..241333Clytia hemisphaericaexon
TCONS_00021240-exon-sc0000379-1510915933:240804..241333TCONS_00021240-exon-sc0000379-1510915933:240804..241333Clytia hemisphaericaexon
TCONS_00021240-exon-sc0000379-1575043694:240804..241333TCONS_00021240-exon-sc0000379-1575043694:240804..241333Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000379supercontigsc0000379:240804..241333 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110523	0.215554	0.375418	0.122429	0	0.471112	0.142094	0.266054	0.0931352	0.576815	0	0	0.514536	0	0.125517	0.0673493	0.0829689	0.340162	0.58744	0.614713	0.641157	0.469101	0.126723	0.11521	0.237326	0.423616	0.757742	0.48521	5.27487	3.99945
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top