TCONS_00021022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00021022
Unique NameTCONS_00021022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00021022 ID=TCONS_00021022|Name=TCONS_00021022|organism=Clytia hemisphaerica|type=transcript|length=382bp
NTTGATGAAAAAGTACTGTACTGTATATTGAAATCATTTGCTGATGATAC
ACGTGCCACCAAGTCAATCAAAAACACAAAGGATgttgaaattcttcaaa
aagaacTAGAAAAAGTCTATGACTGGACTGAAGAAAACAACATGAAACTA
AATGACACAAAATTTGAACTTCTACGCTATGGTCCagatgaagaaataaa
aaaACAAACTCACTACAAAACCCCTTCAGGAGAAAATATCGAAAGGAAGA
AATTTGTGAAGGACCTGGGAGTACTAATGTCAGATGATGCTGTCTTTACA
CATCAAATAAATTCAGTCATTGAGAAAGCAAAAAACTTGATTTCCTGGAT
TCTGCGGACTTTCTCTTCGCGTTTACCCCAAC
Run BLAST on NCBI

protein sequence of TCONS_00021022-protein

>TCONS_00021022-protein ID=TCONS_00021022-protein|Name=TCONS_00021022-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
XDEKVLYCILKSFADDTRATKSIKNTKDVEILQKELEKVYDWTEENNMKL
NDTKFELLRYGPDEEIKKQTHYKTPSGENIERKKFVKDLGVLMSDDAVFT
HQINSVIEKAKNLISWILRTFSSRLPQ
Run BLAST on NCBI

transcript from alignment at sc0000376:203096..203477

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00021022 ID=TCONS_00021022|Name=TCONS_00021022|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at sc0000376:203096..203477 (Clytia hemisphaerica)
GTTGGGGTAAACGCGAAGAGAAAGTCCGCAGAATCCAGGAAATCAAGTTT
TTTGCTTTCTCAATGACTGAATTTATTTGATGTGTAAAGACAGCATCATC
TGACATTAGTACTCCCAGGTCCTTCACAAATTTCTTCCTTTCGATATTTT
CTCCTGAAGGGGTTTTGTAGTGAGTTTGTttttttatttcttcatctGGA
CCATAGCGTAGAAGTTCAAATTTTGTGTCATTTAGTTTCATGTTGTTTTC
TTCAGTCCAGTCATAGACTTTTTCTAgttctttttgaagaatttcaacAT
CCTTTGTGTTTTTGATTGACTTGGTGGCACGTGTATCATCAGCAAATGAT
TTCAATATACAGTACAGTACTTTTTCATCAAN

Coding sequence (CDS) from alignment at sc0000376:203096..203477

>TCONS_00021022 ID=TCONS_00021022|Name=TCONS_00021022|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0000376:203096..203477 (Clytia hemisphaerica)
TTGGGGTAAACGCGAAGAGAAAGTCCGCAGAATCCAGGAAATCAAGTTTT
TTGCTTTCTCAATGACTGAATTTATTTGATGTGTAAAGACAGCATCATCT
GACATTAGTACTCCCAGGTCCTTCACAAATTTCTTCCTTTCGATATTTTC
TCCTGAAGGGGTTTTGTAGTGAGTTTGTttttttatttcttcatctGGAC
CATAGCGTAGAAGTTCAAATTTTGTGTCATTTAGTTTCATGTTGTTTTCT
TCAGTCCAGTCATAGACTTTTTCTAgttctttttgaagaatttcaacATC
CTTTGTGTTTTTGATTGACTTGGTGGCACGTGTATCATCAGCAAATGATT
TCAATATACAGTACAGTACTTTTTCATCAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011793XLOC_011793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021022-exon-sc0000376-1491911889:203096..203477TCONS_00021022-exon-sc0000376-1491911889:203096..203477Clytia hemisphaericaexon
TCONS_00021022-exon-sc0000376-1510915933:203096..203477TCONS_00021022-exon-sc0000376-1510915933:203096..203477Clytia hemisphaericaexon
TCONS_00021022-exon-sc0000376-1575043694:203096..203477TCONS_00021022-exon-sc0000376-1575043694:203096..203477Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00021022-proteinTCONS_00021022-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000376supercontigsc0000376:203096..203477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.93828	5.98297	7.98	8.41372	10.0094	11.7	6.95672	7.46739	4.0435	5.85655	2.90209	5.75506	3.35465	3.55138	1.53833	1.96982	1.17955	1.54795	1.64231	2.91455	2.44394	4.8093	1.26195	1.7362	3.47345	2.678	3.16695	2.53425	2.26137	3.55941
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00021022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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