TCONS_00020924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020924
Unique NameTCONS_00020924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2309

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020924 ID=TCONS_00020924|Name=TCONS_00020924|organism=Clytia hemisphaerica|type=transcript|length=2309bp
TGTATGTACAATATTTTTGCATAACATCAAAAACAATAACATATAAATAG
TATAGTATACATAGTATACAATATTAATAACTTGAAATTTAGTTTTTCCC
CTAAGGCCTaatgaaaaattttaagaaagatTTCGAGTAAAATATTTTAG
TTGTTATCATGATTTTTACTCCAAGATaaccttttgttttgatttactgg
GAGTGTTATGACACAGAGGTCTGCATGTATTAAGATAATACGATATTATA
ATATTATCATTTgctcatttgatttttttttgtaaaatttaattttctgt
cCACGagggaaaaaggaagaaaaacttGAATGAATTAACCTTGGGACTCG
TAacgaagaaagaagaaaaaaaaagtcaaattagGAAAAAAATGCAAGGA
AAAATAGAGTATTTTAATTCAAGAACacaaatatagaaaaaaaaatttag
tctGTAAGATTTGAAATGAATGAATTTTGATTTATGGTTTCATGCAATAA
ACCATTGAATAATTCATGACTGGCCATCCTCGAAGTTAAGAAATCgtaag
gaaaaaaaaaacaagctatgcGTGTGTTCATTTGGCTTTTTCATActtct
tttttaaaattcacaTGGTCCTCACTCTCAACTCTCATAATATACAAAAA
TTAATATTATTTCAAACTTGTAAATTTTTATacatctctctctctctctc
tagaTAAACTAAATatatataaatctttttttggaaCCCCAAAAAAATAA
AGTCAACTAATTTTTAATTTAAGGACCCGTCATGAGCATCCTGTAATATA
AATATACATACAATAAAAATCTCTCTATTTACTGTTTTCACCTCTTTAAC
AATGTTTTCTATAATGTTGTTTTTACTTAAATATATTCTATAatattttg
cataaattttcattttaaaatttttgtcctGTATAAAACCCACACAATAA
TTTTAAAGTCTTACGTTGTATGAGACGTGTGCTAGATTACCTAATGTTTA
CTCACTGTCCTGCTACTCCCGTGCGTCGTGTTAGACGGACATCCGTAACT
CCGACACGAACATTCGGTTGTCCGACTTGAAGGTCGACCGTATTCGTAAG
GTGAGGTTCGGTGATGAGAGTGAGGCTGATGATGAGGGTAATTATAATGT
TCTAAATAAGCATGACTTGTCGGTATTACCGAAGAAAGAGTCGGTGGTGA
ACAAAGTCTGATTTTACGGCTCCCTTCGGCCGTACTTGGTCGACTATGTG
GTGCCGATCGAGGGCTCCATGAGGGTTTGTATGGTGAAATAGGTGGTGGC
CCACTCTGTTCAACACGAGCACGATGTCCTTTAGATAAGATATTATCAAC
TGAAAACCCACTTCGGCTGTTTGGTGATATCAGCGAAGGAGCAGCTTTAC
TATATCCTTGACTGGCTGTGAAAGGGTTGTAATAATAAGGATAATACCTG
CTTATACCGTAACCCATCAAACTTAAATCACGGTTTCGTGGACGATGACT
TGCTCTTCGTTTTCTGAAATCACCTTTTGAGAAGTTCTTCACATACCGTG
GATGGATGCCCCAATAGTTACCACGACCGTTTCGTGCGCGACCAGCCTTT
ATGAAACATTCACTCAACGATAAATTGTGTCGTACACAGTTTCTCCATCC
TTGTCCTTTCTTCAAAAACTCTGGGAAATTTTCTGCAATATAATCGTAAA
TACAACCCAGGGGAAGTTTCTTATCTGTCGAACTGAGAATAGCTTGTGCG
ATGATAGCGGTATATGATGGTGtagttttgtcatttttattgtCTTTGGT
TTCGCCATCTTTGacatctttttcttcttcagcaTTTGAGTTGTTGTCAA
TTTCAGTATTGTTGTTGACATCACCAACAACGATATCCTCGGAGTCGGTC
AATTCCTCATCGTCGTCAATGTTCACATTATAGTTCATTTTATCATCTTC
AAAACTTTCAGCATCACTCAAATCTTTGTCGAACACATCATCTGATTCGT
TTACGGTGGTTGTTTCGCCGTCACATATTTGTGCTTCTCGTCGACCCAAT
ATTTGATCGATTGAGAAAAATGTAGACTTCTTTTGTTGTGCTGCCACTTC
GCTTTTAACGATGGGGACAGGGGAGAGCGAATTTTCTCGCTTAATCGTCG
TACTCATATCAATCATCTTGTATGTGAAATATCGTCTTCCAAttccaaaa
ttccaaaaatacaaGTTTTTTACCAAGGTTCTTGCGTGTTGTTAATACTT
CTTAATAATATCtctaaaaaatcagaaaatgtaaaaaggttaaattccaa
acataaaac
Run BLAST on NCBI

protein sequence of TCONS_00020924-protein

>TCONS_00020924-protein ID=TCONS_00020924-protein|Name=TCONS_00020924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MIDMSTTIKRENSLSPVPIVKSEVAAQQKKSTFFSIDQILGRREAQICDG
ETTTVNESDDVFDKDLSDAESFEDDKMNYNVNIDDDEELTDSEDIVVGDV
NNNTEIDNNSNAEEEKDVKDGETKDNKNDKTTPSYTAIIAQAILSSTDKK
LPLGCIYDYIAENFPEFLKKGQGWRNCVRHNLSLSECFIKAGRARNGRGN
YWGIHPRYVKNFSKGDFRKRRASHRPRNRDLSLMGYGISRYYPYYYNPFT
ASQGYSKAAPSLISPNSRSGFSVDNILSKGHRARVEQSGPPPISPYKPSW
SPRSAPHSRPSTAEGSRKIRLCSPPTLSSVIPTSHAYLEHYNYPHHQPHS
HHRTSPYEYGRPSSRTTECSCRSYGCPSNTTHGSSRTVSKH
Run BLAST on NCBI

transcript from alignment at sc0000373:214861..217169

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020924 ID=TCONS_00020924|Name=TCONS_00020924|organism=Clytia hemisphaerica|type=transcript|length=2309bp|location=Sequence derived from alignment at sc0000373:214861..217169 (Clytia hemisphaerica)
gttttatgtttggaatttaacctttttacattttctgattttttagaGAT
ATTATTAAGAAGTATTAACAACACGCAAGAACCTTGGTAAAAAACttgta
tttttggaattttggaaTTGGAAGACGATATTTCACATACAAGATGATTG
ATATGAGTACGACGATTAAGCGAGAAAATTCGCTCTCCCCTGTCCCCATC
GTTAAAAGCGAAGTGGCAGCACAACAAAAGAAGTCTACATTTTTCTCAAT
CGATCAAATATTGGGTCGACGAGAAGCACAAATATGTGACGGCGAAACAA
CCACCGTAAACGAATCAGATGATGTGTTCGACAAAGATTTGAGTGATGCT
GAAAGTTTTGAAGATGATAAAATGAACTATAATGTGAACATTGACGACGA
TGAGGAATTGACCGACTCCGAGGATATCGTTGTTGGTGATGTCAACAACA
ATACTGAAATTGACAACAACTCAAAtgctgaagaagaaaaagatgtCAAA
GATGGCGAAACCAAAGacaataaaaatgacaaaactaCACCATCATATAC
CGCTATCATCGCACAAGCTATTCTCAGTTCGACAGATAAGAAACTTCCCC
TGGGTTGTATTTACGATTATATTGCAGAAAATTTCCCAGAGTTTTTGAAG
AAAGGACAAGGATGGAGAAACTGTGTACGACACAATTTATCGTTGAGTGA
ATGTTTCATAAAGGCTGGTCGCGCACGAAACGGTCGTGGTAACTATTGGG
GCATCCATCCACGGTATGTGAAGAACTTCTCAAAAGGTGATTTCAGAAAA
CGAAGAGCAAGTCATCGTCCACGAAACCGTGATTTAAGTTTGATGGGTTA
CGGTATAAGCAGGTATTATCCTTATTATTACAACCCTTTCACAGCCAGTC
AAGGATATAGTAAAGCTGCTCCTTCGCTGATATCACCAAACAGCCGAAGT
GGGTTTTCAGTTGATAATATCTTATCTAAAGGACATCGTGCTCGTGTTGA
ACAGAGTGGGCCACCACCTATTTCACCATACAAACCCTCATGGAGCCCTC
GATCGGCACCACATAGTCGACCAAGTACGGCCGAAGGGAGCCGTAAAATC
AGACTTTGTTCACCACCGACTCTTTCTTCGGTAATACCGACAAGTCATGC
TTATTTAGAACATTATAATTACCCTCATCATCAGCCTCACTCTCATCACC
GAACCTCACCTTACGAATACGGTCGACCTTCAAGTCGGACAACCGAATGT
TCGTGTCGGAGTTACGGATGTCCGTCTAACACGACGCACGGGAGTAGCAG
GACAGTGAGTAAACATTAGGTAATCTAGCACACGTCTCATACAACGTAAG
ACTTTAAAATTATTGTGTGGGTTTTATACaggacaaaaattttaaaatga
aaatttatgcaaaatatTATAGAATATATTTAAGTAAAAACAACATTATA
GAAAACATTGTTAAAGAGGTGAAAACAGTAAATAGAGAGATTTTTATTGT
ATGTATATTTATATTACAGGATGCTCATGACGGGTCCTTAAATTAAAAAT
TAGTTGACTTTATTTTTTTGGGGttccaaaaaaagatttatatatATTTA
GTTTAtctagagagagagagagagatgtATAAAAATTTACAAGTTTGAAA
TAATATTAATTTTTGTATATTATGAGAGTTGAGAGTGAGGACCAtgtgaa
ttttaaaaaagaagTATGAAAAAGCCAAATGAACACACgcatagcttgtt
ttttttttccttacGATTTCTTAACTTCGAGGATGGCCAGTCATGAATTA
TTCAATGGTTTATTGCATGAAACCATAAATCAAAATTCATTCATTTCAAA
TCTTACagactaaatttttttttctatatttgtGTTCTTGAATTAAAATA
CTCTATTTTTCCTTGCATTTTTTTCctaatttgactttttttttcttctt
tcttcgtTACGAGTCCCAAGGTTAATTCATTCaagtttttcttccttttt
ccctCGTGgacagaaaattaaattttacaaaaaaaaatcaaatgagcAAA
TGATAATATTATAATATCGTATTATCTTAATACATGCAGACCTCTGTGTC
ATAACACTCccagtaaatcaaaacaaaaggttATCTTGGAGTAAAAATCA
TGATAACAACTAAAATATTTTACTCGAAatctttcttaaaatttttcatt
AGGCCTTAGGGGAAAAACTAAATTTCAAGTTATTAATATTGTATACTATG
TATACTATACTATTTATATGTTATTGTTTTTGATGTTATGCAAAAATATT
GTACATACA

Coding sequence (CDS) from alignment at sc0000373:214861..217169

>TCONS_00020924 ID=TCONS_00020924|Name=TCONS_00020924|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0000373:214861..217169 (Clytia hemisphaerica)
ATGATTGATATGAGTACGACGATTAAGCGAGAAAATTCGCTCTCCCCTGT
CCCCATCGTTAAAAGCGAAGTGGCAGCACAACAAAAGAAGTCTACATTTT
TCTCAATCGATCAAATATTGGGTCGACGAGAAGCACAAATATGTGACGGC
GAAACAACCACCGTAAACGAATCAGATGATGTGTTCGACAAAGATTTGAG
TGATGCTGAAAGTTTTGAAGATGATAAAATGAACTATAATGTGAACATTG
ACGACGATGAGGAATTGACCGACTCCGAGGATATCGTTGTTGGTGATGTC
AACAACAATACTGAAATTGACAACAACTCAAAtgctgaagaagaaaaaga
tgtCAAAGATGGCGAAACCAAAGacaataaaaatgacaaaactaCACCAT
CATATACCGCTATCATCGCACAAGCTATTCTCAGTTCGACAGATAAGAAA
CTTCCCCTGGGTTGTATTTACGATTATATTGCAGAAAATTTCCCAGAGTT
TTTGAAGAAAGGACAAGGATGGAGAAACTGTGTACGACACAATTTATCGT
TGAGTGAATGTTTCATAAAGGCTGGTCGCGCACGAAACGGTCGTGGTAAC
TATTGGGGCATCCATCCACGGTATGTGAAGAACTTCTCAAAAGGTGATTT
CAGAAAACGAAGAGCAAGTCATCGTCCACGAAACCGTGATTTAAGTTTGA
TGGGTTACGGTATAAGCAGGTATTATCCTTATTATTACAACCCTTTCACA
GCCAGTCAAGGATATAGTAAAGCTGCTCCTTCGCTGATATCACCAAACAG
CCGAAGTGGGTTTTCAGTTGATAATATCTTATCTAAAGGACATCGTGCTC
GTGTTGAACAGAGTGGGCCACCACCTATTTCACCATACAAACCCTCATGG
AGCCCTCGATCGGCACCACATAGTCGACCAAGTACGGCCGAAGGGAGCCG
TAAAATCAGACTTTGTTCACCACCGACTCTTTCTTCGGTAATACCGACAA
GTCATGCTTATTTAGAACATTATAATTACCCTCATCATCAGCCTCACTCT
CATCACCGAACCTCACCTTACGAATACGGTCGACCTTCAAGTCGGACAAC
CGAATGTTCGTGTCGGAGTTACGGATGTCCGTCTAACACGACGCACGGGA
GTAGCAGGACAGTGAGTAAACATTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011738XLOC_011738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020924-proteinTCONS_00020924-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020924-exon-sc0000373-1491911889:214861..217169TCONS_00020924-exon-sc0000373-1491911889:214861..217169Clytia hemisphaericaexon
TCONS_00020924-exon-sc0000373-1510915933:214861..217169TCONS_00020924-exon-sc0000373-1510915933:214861..217169Clytia hemisphaericaexon
TCONS_00020924-exon-sc0000373-1575043694:214861..217169TCONS_00020924-exon-sc0000373-1575043694:214861..217169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000373supercontigsc0000373:214861..217169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0329489	0.0191284	0	0	0.0540096	0.868805	1.15904	0.384382	0.352681	0.239625	0.191274	8.30324	9.13641	0.105524	0.123538	19.6577	15.6248	12.8406	12.6099	9.6862	10.3256	1.82083	3.89194	3.41004	5.2126	3.17364	0.0988903	0.243766	0.286568
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001766Fork_head_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00020924 vs. Swiss-Prot (Human)
Match: FOXI1 (Forkhead box protein I1 OS=Homo sapiens GN=FOXI1 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 2.512e-21
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = -3 
Query: 1504 SYTAIIAQAILSSTDKKLPLGCIYDYIAENFPEFLKKGQGWRNCVRHNLSLSECFIKAGRARN--GRGNYWGIHPRYVKNFSKGDFRKRR 1767
            SY+A+IA AI  + DK+L L  IY Y+A+NFP + K   GW+N +RHNLSL++CF K  R  +  G+GNYW + P   K F  G+FR++R
Sbjct:  127 SYSALIAMAIHGAPDKRLTLSQIYQYVADNFPFYNKSKAGWQNSIRHNLSLNDCFKKVPRDEDDPGKGNYWTLDPNCEKMFDNGNFRRKR 216
The following BLAST results are available for this feature:
BLAST of TCONS_00020924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FOXI12.512e-2148.89Forkhead box protein I1 OS=Homo sapiens GN=FOXI1 P... [more]
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